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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 3 cut(s) | 34, 80, 556 |
| AccBSI | CCGCTC | 1 cut(s) | 21 |
| AccII | CGCG | 3 cut(s) | 40, 267, 375 |
| AclWI | GGATC | 3 cut(s) | 576, 890, 1044 |
| AcoI | YGGCCR | 2 cut(s) | 119, 162 |
| AcuI | CTGAAG | 3 cut(s) | 756, 885, 1215 |
| AcvI | CACGTG | 2 cut(s) | 938, 956 |
| AcyI | GRCGYC | 1 cut(s) | 625 |
| AdeI | CACNNNGTG | 1 cut(s) | 941 |
| AfaI | GTAC | 2 cut(s) | 862, 1133 |
| AfeI | AGCGCT | 2 cut(s) | 693, 704 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 236, 499, 739, 957 |
| AflIII | ACRYGT | 2 cut(s) | 935, 953 |
| AgsI | TTSAA | 3 cut(s) | 531, 1060, 1189 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 782 |
| AjiI | CACGTC | 1 cut(s) | 210 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 690, 722 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 560, 592 |
| Alw21I | GWGCWC | 2 cut(s) | 15, 61 |
| AlwI | GGATC | 3 cut(s) | 576, 890, 1044 |
| Ama87I | CYCGRG | 1 cut(s) | 74 |
| Aor51HI | AGCGCT | 2 cut(s) | 693, 704 |
| AoxI | GGCC | 2 cut(s) | 119, 162 |
| AseI | ATTAAT | 1 cut(s) | 1043 |
| AspLEI | GCGC | 7 cut(s) | 197, 242, 269, 375, 377, 694, 705 |
| AspS9I | GGNCC | 1 cut(s) | 1111 |
| AsuC2I | CCSGG | 1 cut(s) | 566 |
| AsuNHI | GCTAGC | 1 cut(s) | 100 |
| AvaI | CYCGRG | 1 cut(s) | 74 |
| AvaII | GGWCC | 1 cut(s) | 1111 |
| BaeGI | GKGCMC | 1 cut(s) | 207 |
| BalI | TGGCCA | 2 cut(s) | 121, 164 |
| BanI | GGYRCC | 3 cut(s) | 34, 80, 556 |
| BanII | GRGCYC | 2 cut(s) | 15, 61 |
| BauI | CACGAG | 4 cut(s) | 14, 28, 60, 886 |
| BbrPI | CACGTG | 2 cut(s) | 938, 956 |
| BbsI | GAAGAC | 1 cut(s) | 1203 |
| Bbv12I | GWGCWC | 2 cut(s) | 15, 61 |
| BccI | CCATC | 4 cut(s) | 342, 395, 422, 1148 |
| BceAI | ACGGC | 1 cut(s) | 969 |
| BciVI | GTATCC | 2 cut(s) | 925, 986 |
| BcnI | CCSGG | 1 cut(s) | 566 |
| BfaI | CTAG | 5 cut(s) | 101, 450, 695, 981, 1085 |
| BfmI | CTRYAG | 5 cut(s) | 110, 217, 364, 430, 1096 |
| BfoI | RGCGCY | 3 cut(s) | 198, 695, 706 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BfuI | GTATCC | 2 cut(s) | 925, 986 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 43 |
| Bme1390I | CCNGG | 1 cut(s) | 566 |
| Bme18I | GGWCC | 1 cut(s) | 1111 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 782 |
| BmeT110I | CYCGRG | 1 cut(s) | 74 |
| BmgBI | CACGTC | 1 cut(s) | 210 |
| BmgT120I | GGNCC | 1 cut(s) | 1111 |
| BmiI | GGNNCC | 4 cut(s) | 36, 82, 558, 1112 |
| BmrFI | CCNGG | 1 cut(s) | 566 |
| BmsI | GCATC | 6 cut(s) | 262, 391, 418, 609, 661, 1204 |
| BmtI | GCTAGC | 1 cut(s) | 104 |
| BpiI | GAAGAC | 1 cut(s) | 1203 |
| BpuEI | CTTGAG | 1 cut(s) | 588 |
| BpuMI | CCSGG | 1 cut(s) | 566 |
| Bsa29I | ATCGAT | 1 cut(s) | 1029 |
| BsaAI | YACGTR | 2 cut(s) | 938, 956 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1035, 1167 |
| BsaHI | GRCGYC | 1 cut(s) | 625 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 952, 982 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 236, 499, 739, 957 |
| Bse1I | ACTGG | 1 cut(s) | 101 |
| Bse3DI | GCAATG | 2 cut(s) | 718, 1070 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1035, 1167 |
| BseCI | ATCGAT | 1 cut(s) | 1029 |
| BseGI | GGATG | 6 cut(s) | 253, 334, 382, 409, 441, 1219 |
| BseJI | GATNNNNATC | 2 cut(s) | 1035, 1167 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 236, 499, 739, 957 |
| BseMI | GCAATG | 2 cut(s) | 718, 1070 |
| BseMII | CTCAG | 3 cut(s) | 658, 755, 1106 |
| BseNI | ACTGG | 1 cut(s) | 101 |
| BsePI | GCGCGC | 1 cut(s) | 373 |
| BseRI | GAGGAG | 1 cut(s) | 719 |
| BseSI | GKGCMC | 1 cut(s) | 207 |
| BseYI | CCCAGC | 5 cut(s) | 229, 311, 338, 347, 378 |
| Bsh1236I | CGCG | 3 cut(s) | 40, 267, 375 |
| BshFI | GGCC | 2 cut(s) | 121, 164 |
| BshNI | GGYRCC | 3 cut(s) | 34, 80, 556 |
| BshVI | ATCGAT | 1 cut(s) | 1029 |
| BsiHKAI | GWGCWC | 2 cut(s) | 15, 61 |
| BsiHKCI | CYCGRG | 1 cut(s) | 74 |
| BsiSI | CCGG | 2 cut(s) | 237, 566 |
| BslFI | GGGAC | 1 cut(s) | 1124 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 236, 499, 739, 957 |
| BsmFI | GGGAC | 1 cut(s) | 1124 |
| BsnI | GGCC | 2 cut(s) | 121, 164 |
| BsoBI | CYCGRG | 1 cut(s) | 74 |
| Bsp1286I | GDGCHC | 3 cut(s) | 15, 61, 207 |
| Bsp143I | GATC | 5 cut(s) | 424, 568, 663, 882, 1036 |
| BspANI | GGCC | 2 cut(s) | 121, 164 |
| BspCNI | CTCAG | 3 cut(s) | 657, 756, 1107 |
| BspDI | ATCGAT | 1 cut(s) | 1029 |
| BspFNI | CGCG | 3 cut(s) | 40, 267, 375 |
| BspLI | GGNNCC | 4 cut(s) | 36, 82, 558, 1112 |
| BspMAI | CTGCAG | 4 cut(s) | 114, 221, 368, 434 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspOI | GCTAGC | 1 cut(s) | 104 |
| BspPI | GGATC | 3 cut(s) | 576, 890, 1044 |
| BspQI | GCTCTTC | 2 cut(s) | 693, 750 |
| BspT107I | GGYRCC | 3 cut(s) | 34, 80, 556 |
| BsrBI | CCGCTC | 1 cut(s) | 21 |
| BsrDI | GCAATG | 2 cut(s) | 718, 1070 |
| BsrI | ACTGG | 1 cut(s) | 101 |
| BssHII | GCGCGC | 1 cut(s) | 373 |
| BssMI | GATC | 5 cut(s) | 424, 568, 663, 882, 1036 |
| BssNI | GRCGYC | 1 cut(s) | 625 |
| BssSI | CACGAG | 4 cut(s) | 14, 28, 60, 886 |
| Bst2BI | CACGAG | 4 cut(s) | 14, 28, 60, 886 |
| Bst4CI | ACNGT | 2 cut(s) | 497, 860 |
| Bst6I | CTCTTC | 3 cut(s) | 693, 732, 750 |
| BstACI | GRCGYC | 1 cut(s) | 625 |
| BstBAI | YACGTR | 2 cut(s) | 938, 956 |
| BstC8I | GCNNGC | 9 cut(s) | 102, 114, 123, 166, 371, 375, 600, 1075, 1093 |
| BstDEI | CTNAG | 3 cut(s) | 644, 764, 1115 |
| BstF5I | GGATG | 6 cut(s) | 253, 334, 382, 409, 441, 1219 |
| BstFNI | CGCG | 3 cut(s) | 40, 267, 375 |
| BstH2I | RGCGCY | 3 cut(s) | 198, 695, 706 |
| BstHHI | GCGC | 7 cut(s) | 197, 242, 269, 375, 377, 694, 705 |
| BstKTI | GATC | 5 cut(s) | 427, 571, 666, 885, 1039 |
| BstMBI | GATC | 5 cut(s) | 424, 568, 663, 882, 1036 |
| BstNSI | RCATGY | 1 cut(s) | 602 |
| BstSCI | CCNGG | 1 cut(s) | 564 |
| BstSFI | CTRYAG | 5 cut(s) | 110, 217, 364, 430, 1096 |
| BstSLI | GKGCMC | 1 cut(s) | 207 |
| BstUI | CGCG | 3 cut(s) | 40, 267, 375 |
| BstV2I | GAAGAC | 1 cut(s) | 1203 |
| BstX2I | RGATCY | 1 cut(s) | 568 |
| BstYI | RGATCY | 1 cut(s) | 568 |
| Bsu15I | ATCGAT | 1 cut(s) | 1029 |
| BsuI | GTATCC | 2 cut(s) | 925, 986 |
| BsuRI | GGCC | 2 cut(s) | 121, 164 |
| BsuTUI | ATCGAT | 1 cut(s) | 1029 |
| BtgZI | GCGATG | 2 cut(s) | 373, 400 |
| BtrI | CACGTC | 1 cut(s) | 210 |
| BtsCI | GGATG | 6 cut(s) | 253, 334, 382, 409, 441, 1219 |
| BtsI | GCAGTG | 1 cut(s) | 272 |
| BtsIMutI | CAGTG | 1 cut(s) | 272 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 9 cut(s) | 102, 114, 123, 166, 371, 375, 600, 1075, 1093 |
| CfoI | GCGC | 7 cut(s) | 197, 242, 269, 375, 377, 694, 705 |
| Cfr13I | GGNCC | 1 cut(s) | 1111 |
| ClaI | ATCGAT | 1 cut(s) | 1029 |
| CseI | GACGC | 1 cut(s) | 633 |
| Csp6I | GTAC | 2 cut(s) | 861, 1132 |
| CviAII | CATG | 5 cut(s) | 47, 466, 599, 915, 1210 |
| CviQI | GTAC | 2 cut(s) | 861, 1132 |
| DdeI | CTNAG | 3 cut(s) | 644, 764, 1115 |
| DpnI | GATC | 5 cut(s) | 426, 570, 665, 884, 1038 |
| DpnII | GATC | 5 cut(s) | 424, 568, 663, 882, 1036 |
| DraIII | CACNNNGTG | 1 cut(s) | 941 |
| DriI | GACNNNNNGTC | 1 cut(s) | 782 |
| EaeI | YGGCCR | 2 cut(s) | 119, 162 |
| Eam1104I | CTCTTC | 3 cut(s) | 693, 732, 750 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 782 |
| EarI | CTCTTC | 3 cut(s) | 693, 732, 750 |
| EciI | GGCGGA | 3 cut(s) | 23, 69, 168 |
| Ecl136II | GAGCTC | 2 cut(s) | 13, 59 |
| Eco24I | GRGCYC | 2 cut(s) | 15, 61 |
| Eco47I | GGWCC | 1 cut(s) | 1111 |
| Eco47III | AGCGCT | 2 cut(s) | 693, 704 |
| Eco53kI | GAGCTC | 2 cut(s) | 13, 59 |
| Eco57I | CTGAAG | 3 cut(s) | 756, 885, 1215 |
| Eco72I | CACGTG | 2 cut(s) | 938, 956 |
| Eco88I | CYCGRG | 1 cut(s) | 74 |
| EcoICRI | GAGCTC | 2 cut(s) | 13, 59 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1111 |
| EcoT38I | GRGCYC | 2 cut(s) | 15, 61 |
| FaeI | CATG | 5 cut(s) | 50, 469, 602, 918, 1213 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 729, 761, 1119, 1151 |
| FaqI | GGGAC | 1 cut(s) | 1124 |
| FatI | CATG | 5 cut(s) | 46, 465, 598, 914, 1209 |
| FauI | CCCGC | 3 cut(s) | 272, 291, 315 |
| FauNDI | CATATG | 1 cut(s) | 630 |
| FokI | GGATG | 6 cut(s) | 240, 321, 369, 396, 448, 1226 |
| FriOI | GRGCYC | 2 cut(s) | 15, 61 |
| FspBI | CTAG | 5 cut(s) | 101, 450, 695, 981, 1085 |
| GlaI | GCGC | 7 cut(s) | 196, 241, 268, 374, 376, 693, 704 |
| GsaI | CCCAGC | 5 cut(s) | 233, 315, 342, 351, 382 |
| HaeII | RGCGCY | 3 cut(s) | 198, 695, 706 |
| HaeIII | GGCC | 2 cut(s) | 121, 164 |
| HapII | CCGG | 2 cut(s) | 237, 566 |
| HgaI | GACGC | 1 cut(s) | 633 |
| HhaI | GCGC | 7 cut(s) | 197, 242, 269, 375, 377, 694, 705 |
| Hin1I | GRCGYC | 1 cut(s) | 625 |
| Hin1II | CATG | 5 cut(s) | 50, 469, 602, 918, 1213 |
| Hin6I | GCGC | 7 cut(s) | 195, 240, 267, 373, 375, 692, 703 |
| HinP1I | GCGC | 7 cut(s) | 195, 240, 267, 373, 375, 692, 703 |
| HinfI | GANTC | 4 cut(s) | 473, 517, 722, 906 |
| HpaII | CCGG | 2 cut(s) | 237, 566 |
| Hpy166II | GTNNAC | 3 cut(s) | 776, 901, 1132 |
| Hpy188I | TCNGA | 3 cut(s) | 397, 424, 647 |
| Hpy188III | TCNNGA | 4 cut(s) | 16, 62, 616, 886 |
| Hpy8I | GTNNAC | 3 cut(s) | 776, 901, 1132 |
| Hpy99I | CGWCG | 2 cut(s) | 214, 627 |
| HpyAV | CCTTC | 4 cut(s) | 36, 82, 336, 832 |
| HpyCH4III | ACNGT | 2 cut(s) | 497, 860 |
| HpyCH4IV | ACGT | 3 cut(s) | 209, 937, 955 |
| HpyF3I | CTNAG | 3 cut(s) | 644, 764, 1115 |
| HpySE526I | ACGT | 3 cut(s) | 209, 937, 955 |
| Hsp92I | GRCGYC | 1 cut(s) | 625 |
| Hsp92II | CATG | 5 cut(s) | 50, 469, 602, 918, 1213 |
| HspAI | GCGC | 7 cut(s) | 195, 240, 267, 373, 375, 692, 703 |
| Kzo9I | GATC | 5 cut(s) | 424, 568, 663, 882, 1036 |
| LguI | GCTCTTC | 2 cut(s) | 693, 750 |
| LmnI | GCTCC | 3 cut(s) | 10, 56, 106 |
| LweI | GCATC | 6 cut(s) | 262, 391, 418, 609, 661, 1204 |
| MaeI | CTAG | 5 cut(s) | 101, 450, 695, 981, 1085 |
| MaeII | ACGT | 3 cut(s) | 209, 937, 955 |
| MaeIII | GTNAC | 2 cut(s) | 502, 784 |
| MalI | GATC | 5 cut(s) | 426, 570, 665, 884, 1038 |
| MbiI | CCGCTC | 1 cut(s) | 21 |
| MboI | GATC | 5 cut(s) | 424, 568, 663, 882, 1036 |
| MboII | GAAGA | 8 cut(s) | 710, 737, 749, 1154, 1157, 1160, 1163, 1208 |
| MflI | RGATCY | 1 cut(s) | 568 |
| MhlI | GDGCHC | 3 cut(s) | 15, 61, 207 |
| MlsI | TGGCCA | 2 cut(s) | 121, 164 |
| MluCI | AATT | 4 cut(s) | 487, 801, 1040, 1044 |
| MluNI | TGGCCA | 2 cut(s) | 121, 164 |
| MlyI | GAGTC | 1 cut(s) | 467 |
| Mox20I | TGGCCA | 2 cut(s) | 121, 164 |
| MscI | TGGCCA | 2 cut(s) | 121, 164 |
| MseI | TTAA | 2 cut(s) | 998, 1043 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1212 |
| Msp20I | TGGCCA | 2 cut(s) | 121, 164 |
| MspA1I | CMGCKG | 1 cut(s) | 168 |
| MspI | CCGG | 2 cut(s) | 237, 566 |
| MspR9I | CCNGG | 1 cut(s) | 566 |
| MvnI | CGCG | 3 cut(s) | 40, 267, 375 |
| NciI | CCSGG | 1 cut(s) | 566 |
| NdeI | CATATG | 1 cut(s) | 630 |
| NdeII | GATC | 5 cut(s) | 424, 568, 663, 882, 1036 |
| NheI | GCTAGC | 1 cut(s) | 100 |
| NlaIII | CATG | 5 cut(s) | 50, 469, 602, 918, 1213 |
| NlaIV | GGNNCC | 4 cut(s) | 36, 82, 558, 1112 |
| NmuCI | GTSAC | 1 cut(s) | 784 |
| NspI | RCATGY | 1 cut(s) | 602 |
| PaeI | GCATGC | 1 cut(s) | 602 |
| PauI | GCGCGC | 1 cut(s) | 373 |
| PciSI | GCTCTTC | 2 cut(s) | 693, 750 |
| PfeI | GAWTC | 3 cut(s) | 517, 722, 906 |
| PleI | GAGTC | 1 cut(s) | 467 |
| PmaCI | CACGTG | 2 cut(s) | 938, 956 |
| PmlI | CACGTG | 2 cut(s) | 938, 956 |
| PpsI | GAGTC | 1 cut(s) | 467 |
| Ppu21I | YACGTR | 2 cut(s) | 938, 956 |
| PpuMI | RGGWCCY | 1 cut(s) | 1111 |
| PshBI | ATTAAT | 1 cut(s) | 1043 |
| Psp124BI | GAGCTC | 2 cut(s) | 15, 61 |
| Psp5II | RGGWCCY | 1 cut(s) | 1111 |
| PspCI | CACGTG | 2 cut(s) | 938, 956 |
| PspFI | CCCAGC | 5 cut(s) | 229, 311, 338, 347, 378 |
| PspN4I | GGNNCC | 4 cut(s) | 36, 82, 558, 1112 |
| PspPI | GGNCC | 1 cut(s) | 1111 |
| PspPPI | RGGWCCY | 1 cut(s) | 1111 |
| PstI | CTGCAG | 4 cut(s) | 114, 221, 368, 434 |
| PsuI | RGATCY | 1 cut(s) | 568 |
| PteI | GCGCGC | 1 cut(s) | 373 |
| RsaI | GTAC | 2 cut(s) | 862, 1133 |
| RsaNI | GTAC | 2 cut(s) | 861, 1132 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1212 |
| SacI | GAGCTC | 2 cut(s) | 15, 61 |
| SapI | GCTCTTC | 2 cut(s) | 693, 750 |
| SaqAI | TTAA | 2 cut(s) | 998, 1043 |
| Sau3AI | GATC | 5 cut(s) | 424, 568, 663, 882, 1036 |
| Sau96I | GGNCC | 1 cut(s) | 1111 |
| SchI | GAGTC | 1 cut(s) | 467 |
| ScrFI | CCNGG | 1 cut(s) | 566 |
| SduI | GDGCHC | 3 cut(s) | 15, 61, 207 |
| SfaNI | GCATC | 6 cut(s) | 262, 391, 418, 609, 661, 1204 |
| SfcI | CTRYAG | 5 cut(s) | 110, 217, 364, 430, 1096 |
| SinI | GGWCC | 1 cut(s) | 1111 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1212 |
| SmlI | CTYRAG | 1 cut(s) | 603 |
| SmoI | CTYRAG | 1 cut(s) | 603 |
| SphI | GCATGC | 1 cut(s) | 602 |
| Sse9I | AATT | 4 cut(s) | 487, 801, 1040, 1044 |
| SspI | AATATT | 1 cut(s) | 540 |
| SspMI | CTAG | 5 cut(s) | 101, 450, 695, 981, 1085 |
| SstI | GAGCTC | 2 cut(s) | 15, 61 |
| StyD4I | CCNGG | 1 cut(s) | 564 |
| TaaI | ACNGT | 2 cut(s) | 497, 860 |
| TaiI | ACGT | 3 cut(s) | 212, 940, 958 |
| TaqI | TCGA | 5 cut(s) | 212, 440, 485, 662, 1029 |
| TasI | AATT | 4 cut(s) | 487, 801, 1040, 1044 |
| TauI | GCSGC | 1 cut(s) | 40 |
| TfiI | GAWTC | 3 cut(s) | 517, 722, 906 |
| Tru1I | TTAA | 2 cut(s) | 998, 1043 |
| Tru9I | TTAA | 2 cut(s) | 998, 1043 |
| TscAI | CASTG | 1 cut(s) | 279 |
| TseFI | GTSAC | 1 cut(s) | 784 |
| Tsp45I | GTSAC | 1 cut(s) | 784 |
| TspDTI | ATGAA | 1 cut(s) | 459 |
| TspGWI | ACGGA | 1 cut(s) | 895 |
| TspRI | CASTG | 1 cut(s) | 279 |
| VpaK11BI | GGWCC | 1 cut(s) | 1111 |
| VspI | ATTAAT | 1 cut(s) | 1043 |
| XceI | RCATGY | 1 cut(s) | 602 |
| XspI | CTAG | 5 cut(s) | 101, 450, 695, 981, 1085 |