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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 69 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 405 |
| AccB1I | GGYRCC | 1 cut(s) | 536 |
| AccII | CGCG | 1 cut(s) | 345 |
| AciI | CCGC | 1 cut(s) | 37 |
| AcoI | YGGCCR | 1 cut(s) | 112 |
| AcyI | GRCGYC | 3 cut(s) | 507, 519, 537 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 356, 427, 481, 485 |
| AgsI | TTSAA | 2 cut(s) | 52, 186 |
| AjnI | CCWGG | 1 cut(s) | 541 |
| AluBI | AGCT | 4 cut(s) | 33, 80, 238, 260 |
| AluI | AGCT | 4 cut(s) | 33, 80, 238, 260 |
| Alw21I | GWGCWC | 1 cut(s) | 240 |
| Alw26I | GTCTC | 2 cut(s) | 99, 172 |
| AoxI | GGCC | 4 cut(s) | 112, 246, 593, 626 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 81 |
| AspA2I | CCTAGG | 1 cut(s) | 479 |
| AspLEI | GCGC | 3 cut(s) | 347, 491, 539 |
| AspS9I | GGNCC | 3 cut(s) | 246, 302, 407 |
| AsuHPI | GGTGA | 3 cut(s) | 542, 550, 557 |
| AvaII | GGWCC | 2 cut(s) | 302, 407 |
| AvrII | CCTAGG | 1 cut(s) | 479 |
| BalI | TGGCCA | 1 cut(s) | 114 |
| BanI | GGYRCC | 1 cut(s) | 536 |
| BanII | GRGCYC | 1 cut(s) | 240 |
| BbsI | GAAGAC | 1 cut(s) | 152 |
| Bbv12I | GWGCWC | 1 cut(s) | 240 |
| BccI | CCATC | 6 cut(s) | 18, 94, 293, 509, 527, 531 |
| BciT130I | CCWGG | 1 cut(s) | 543 |
| BcoDI | GTCTC | 2 cut(s) | 99, 172 |
| BfaI | CTAG | 2 cut(s) | 396, 480 |
| BfmI | CTRYAG | 1 cut(s) | 337 |
| BfoI | RGCGCY | 1 cut(s) | 540 |
| BlnI | CCTAGG | 1 cut(s) | 479 |
| Bme1390I | CCNGG | 1 cut(s) | 543 |
| Bme18I | GGWCC | 2 cut(s) | 302, 407 |
| BmgT120I | GGNCC | 3 cut(s) | 246, 302, 407 |
| BmiI | GGNNCC | 3 cut(s) | 247, 304, 538 |
| BmrFI | CCNGG | 1 cut(s) | 543 |
| BmsI | GCATC | 1 cut(s) | 228 |
| BpiI | GAAGAC | 1 cut(s) | 152 |
| Bpu10I | CCTNAGC | 1 cut(s) | 590 |
| BsaBI | GATNNNNATC | 1 cut(s) | 137 |
| BsaHI | GRCGYC | 3 cut(s) | 507, 519, 537 |
| BsaJI | CCNNGG | 4 cut(s) | 306, 479, 510, 541 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 356, 427, 481, 485 |
| Bse1I | ACTGG | 1 cut(s) | 650 |
| Bse8I | GATNNNNATC | 1 cut(s) | 137 |
| BseBI | CCWGG | 1 cut(s) | 543 |
| BseDI | CCNNGG | 4 cut(s) | 306, 479, 510, 541 |
| BseGI | GGATG | 1 cut(s) | 520 |
| BseJI | GATNNNNATC | 1 cut(s) | 137 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 356, 427, 481, 485 |
| BseMII | CTCAG | 1 cut(s) | 604 |
| BseNI | ACTGG | 1 cut(s) | 650 |
| BsgI | GTGCAG | 1 cut(s) | 156 |
| Bsh1236I | CGCG | 1 cut(s) | 345 |
| BshFI | GGCC | 4 cut(s) | 114, 248, 595, 628 |
| BshNI | GGYRCC | 1 cut(s) | 536 |
| BsiHKAI | GWGCWC | 1 cut(s) | 240 |
| BslFI | GGGAC | 1 cut(s) | 401 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 356, 427, 481, 485 |
| BsmAI | GTCTC | 2 cut(s) | 99, 172 |
| BsmBI | CGTCTC | 1 cut(s) | 172 |
| BsmFI | GGGAC | 1 cut(s) | 401 |
| BsnI | GGCC | 4 cut(s) | 114, 248, 595, 628 |
| Bsp1286I | GDGCHC | 1 cut(s) | 240 |
| Bsp143I | GATC | 1 cut(s) | 138 |
| Bsp19I | CCATGG | 1 cut(s) | 510 |
| BspACI | CCGC | 1 cut(s) | 37 |
| BspANI | GGCC | 4 cut(s) | 114, 248, 595, 628 |
| BspCNI | CTCAG | 1 cut(s) | 603 |
| BspFNI | CGCG | 1 cut(s) | 345 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspLI | GGNNCC | 3 cut(s) | 247, 304, 538 |
| BspQI | GCTCTTC | 1 cut(s) | 87 |
| BspT107I | GGYRCC | 1 cut(s) | 536 |
| BsrI | ACTGG | 1 cut(s) | 650 |
| BssECI | CCNNGG | 4 cut(s) | 306, 479, 510, 541 |
| BssMI | GATC | 1 cut(s) | 138 |
| BssNI | GRCGYC | 3 cut(s) | 507, 519, 537 |
| BssT1I | CCWWGG | 2 cut(s) | 479, 510 |
| Bst2UI | CCWGG | 1 cut(s) | 543 |
| Bst6I | CTCTTC | 1 cut(s) | 87 |
| BstACI | GRCGYC | 3 cut(s) | 507, 519, 537 |
| BstC8I | GCNNGC | 1 cut(s) | 487 |
| BstDEI | CTNAG | 5 cut(s) | 315, 378, 590, 623, 645 |
| BstDSI | CCRYGG | 2 cut(s) | 306, 510 |
| BstF5I | GGATG | 1 cut(s) | 520 |
| BstFNI | CGCG | 1 cut(s) | 345 |
| BstH2I | RGCGCY | 1 cut(s) | 540 |
| BstHHI | GCGC | 3 cut(s) | 347, 491, 539 |
| BstKTI | GATC | 1 cut(s) | 141 |
| BstMAI | GTCTC | 2 cut(s) | 99, 172 |
| BstMBI | GATC | 1 cut(s) | 138 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 625 |
| BstNI | CCWGG | 1 cut(s) | 543 |
| BstSCI | CCNGG | 1 cut(s) | 541 |
| BstSFI | CTRYAG | 1 cut(s) | 337 |
| BstUI | CGCG | 1 cut(s) | 345 |
| BstV2I | GAAGAC | 1 cut(s) | 152 |
| BsuRI | GGCC | 4 cut(s) | 114, 248, 595, 628 |
| BtgI | CCRYGG | 2 cut(s) | 306, 510 |
| BtgZI | GCGATG | 1 cut(s) | 37 |
| BtsCI | GGATG | 1 cut(s) | 520 |
| BtsI | GCAGTG | 1 cut(s) | 456 |
| BtsIMutI | CAGTG | 2 cut(s) | 173, 456 |
| Cac8I | GCNNGC | 1 cut(s) | 487 |
| CciI | TCATGA | 1 cut(s) | 232 |
| CfoI | GCGC | 3 cut(s) | 347, 491, 539 |
| Cfr13I | GGNCC | 3 cut(s) | 246, 302, 407 |
| CseI | GACGC | 4 cut(s) | 369, 508, 515, 595 |
| CviAII | CATG | 5 cut(s) | 233, 250, 503, 511, 527 |
| DdeI | CTNAG | 5 cut(s) | 315, 378, 590, 623, 645 |
| DinI | GGCGCC | 1 cut(s) | 538 |
| DpnI | GATC | 1 cut(s) | 140 |
| DpnII | GATC | 1 cut(s) | 138 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 405 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 405 |
| EaeI | YGGCCR | 1 cut(s) | 112 |
| Eam1104I | CTCTTC | 1 cut(s) | 87 |
| EarI | CTCTTC | 1 cut(s) | 87 |
| Ecl136II | GAGCTC | 1 cut(s) | 238 |
| Eco130I | CCWWGG | 2 cut(s) | 479, 510 |
| Eco147I | AGGCCT | 2 cut(s) | 595, 628 |
| Eco24I | GRGCYC | 1 cut(s) | 240 |
| Eco47I | GGWCC | 2 cut(s) | 302, 407 |
| Eco53kI | GAGCTC | 1 cut(s) | 238 |
| EcoICRI | GAGCTC | 1 cut(s) | 238 |
| EcoRII | CCWGG | 1 cut(s) | 541 |
| EcoT14I | CCWWGG | 2 cut(s) | 479, 510 |
| EcoT38I | GRGCYC | 1 cut(s) | 240 |
| EgeI | GGCGCC | 1 cut(s) | 538 |
| EheI | GGCGCC | 1 cut(s) | 538 |
| ErhI | CCWWGG | 2 cut(s) | 479, 510 |
| Esp3I | CGTCTC | 1 cut(s) | 172 |
| FaeI | CATG | 5 cut(s) | 236, 253, 506, 514, 530 |
| FaqI | GGGAC | 1 cut(s) | 401 |
| FatI | CATG | 5 cut(s) | 232, 249, 502, 510, 526 |
| FauNDI | CATATG | 1 cut(s) | 412 |
| FokI | GGATG | 1 cut(s) | 527 |
| FriOI | GRGCYC | 1 cut(s) | 240 |
| FspBI | CTAG | 2 cut(s) | 396, 480 |
| GlaI | GCGC | 3 cut(s) | 346, 490, 538 |
| HaeII | RGCGCY | 1 cut(s) | 540 |
| HaeIII | GGCC | 4 cut(s) | 114, 248, 595, 628 |
| HgaI | GACGC | 4 cut(s) | 369, 508, 515, 595 |
| HhaI | GCGC | 3 cut(s) | 347, 491, 539 |
| Hin1I | GRCGYC | 3 cut(s) | 507, 519, 537 |
| Hin1II | CATG | 5 cut(s) | 236, 253, 506, 514, 530 |
| Hin6I | GCGC | 3 cut(s) | 345, 489, 537 |
| HinP1I | GCGC | 3 cut(s) | 345, 489, 537 |
| HinfI | GANTC | 1 cut(s) | 329 |
| HphI | GGTGA | 3 cut(s) | 542, 550, 557 |
| Hpy166II | GTNNAC | 1 cut(s) | 469 |
| Hpy188I | TCNGA | 5 cut(s) | 76, 99, 198, 328, 585 |
| Hpy188III | TCNNGA | 5 cut(s) | 8, 142, 233, 396, 660 |
| Hpy8I | GTNNAC | 1 cut(s) | 469 |
| HpyAV | CCTTC | 3 cut(s) | 169, 425, 666 |
| HpyCH4IV | ACGT | 1 cut(s) | 255 |
| HpyCH4V | TGCA | 2 cut(s) | 173, 212 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 625 |
| HpyF3I | CTNAG | 5 cut(s) | 315, 378, 590, 623, 645 |
| HpySE526I | ACGT | 1 cut(s) | 255 |
| Hsp92I | GRCGYC | 3 cut(s) | 507, 519, 537 |
| Hsp92II | CATG | 5 cut(s) | 236, 253, 506, 514, 530 |
| HspAI | GCGC | 3 cut(s) | 345, 489, 537 |
| KasI | GGCGCC | 1 cut(s) | 536 |
| Kzo9I | GATC | 1 cut(s) | 138 |
| LguI | GCTCTTC | 1 cut(s) | 87 |
| LmnI | GCTCC | 1 cut(s) | 367 |
| LpnPI | CCDG | 9 cut(s) | 21, 198, 390, 471, 488, 528, 555, 577, 663 |
| LweI | GCATC | 1 cut(s) | 228 |
| MaeI | CTAG | 2 cut(s) | 396, 480 |
| MaeII | ACGT | 1 cut(s) | 255 |
| MalI | GATC | 1 cut(s) | 140 |
| MboI | GATC | 1 cut(s) | 138 |
| MboII | GAAGA | 3 cut(s) | 74, 157, 298 |
| MhlI | GDGCHC | 1 cut(s) | 240 |
| MlsI | TGGCCA | 1 cut(s) | 114 |
| MluCI | AATT | 3 cut(s) | 190, 391, 664 |
| MluNI | TGGCCA | 1 cut(s) | 114 |
| Mly113I | GGCGCC | 1 cut(s) | 537 |
| MlyI | GAGTC | 1 cut(s) | 338 |
| MnlI | CCTC | 4 cut(s) | 350, 421, 472, 639 |
| Mox20I | TGGCCA | 1 cut(s) | 114 |
| MroXI | GAANNNNTTC | 1 cut(s) | 81 |
| MscI | TGGCCA | 1 cut(s) | 114 |
| MslI | CAYNNNNRTG | 2 cut(s) | 528, 531 |
| Msp20I | TGGCCA | 1 cut(s) | 114 |
| MspR9I | CCNGG | 1 cut(s) | 543 |
| MvaI | CCWGG | 1 cut(s) | 543 |
| MvnI | CGCG | 1 cut(s) | 345 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 625 |
| NarI | GGCGCC | 1 cut(s) | 537 |
| NcoI | CCATGG | 1 cut(s) | 510 |
| NdeI | CATATG | 1 cut(s) | 412 |
| NdeII | GATC | 1 cut(s) | 138 |
| NlaIII | CATG | 5 cut(s) | 236, 253, 506, 514, 530 |
| NlaIV | GGNNCC | 3 cut(s) | 247, 304, 538 |
| NmeAIII | GCCGAG | 1 cut(s) | 467 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PceI | AGGCCT | 2 cut(s) | 595, 628 |
| PciSI | GCTCTTC | 1 cut(s) | 87 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 367 |
| PdmI | GAANNNNTTC | 1 cut(s) | 81 |
| PleI | GAGTC | 1 cut(s) | 337 |
| PluTI | GGCGCC | 1 cut(s) | 540 |
| PpsI | GAGTC | 1 cut(s) | 337 |
| PsiI | TTATAA | 1 cut(s) | 69 |
| Psp124BI | GAGCTC | 1 cut(s) | 240 |
| Psp6I | CCWGG | 1 cut(s) | 541 |
| PspGI | CCWGG | 1 cut(s) | 541 |
| PspN4I | GGNNCC | 3 cut(s) | 247, 304, 538 |
| PspPI | GGNCC | 3 cut(s) | 246, 302, 407 |
| RseI | CAYNNNNRTG | 2 cut(s) | 528, 531 |
| SacI | GAGCTC | 1 cut(s) | 240 |
| SapI | GCTCTTC | 1 cut(s) | 87 |
| Sau3AI | GATC | 1 cut(s) | 138 |
| Sau96I | GGNCC | 3 cut(s) | 246, 302, 407 |
| SchI | GAGTC | 1 cut(s) | 338 |
| ScrFI | CCNGG | 1 cut(s) | 543 |
| SduI | GDGCHC | 1 cut(s) | 240 |
| SetI | ASST | 8 cut(s) | 35, 82, 161, 230, 240, 258, 262, 547 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SfcI | CTRYAG | 1 cut(s) | 337 |
| SfoI | GGCGCC | 1 cut(s) | 538 |
| SinI | GGWCC | 2 cut(s) | 302, 407 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 528, 531 |
| Sse9I | AATT | 3 cut(s) | 190, 391, 664 |
| SseBI | AGGCCT | 2 cut(s) | 595, 628 |
| SsiI | CCGC | 1 cut(s) | 37 |
| SspDI | GGCGCC | 1 cut(s) | 536 |
| SspMI | CTAG | 2 cut(s) | 396, 480 |
| SstI | GAGCTC | 1 cut(s) | 240 |
| StuI | AGGCCT | 2 cut(s) | 595, 628 |
| StyD4I | CCNGG | 1 cut(s) | 541 |
| StyI | CCWWGG | 2 cut(s) | 479, 510 |
| TaiI | ACGT | 1 cut(s) | 258 |
| TaqI | TCGA | 1 cut(s) | 141 |
| TasI | AATT | 3 cut(s) | 190, 391, 664 |
| TscAI | CASTG | 2 cut(s) | 180, 463 |
| TspDTI | ATGAA | 2 cut(s) | 221, 266 |
| TspGWI | ACGGA | 1 cut(s) | 454 |
| TspRI | CASTG | 2 cut(s) | 180, 463 |
| VpaK11BI | GGWCC | 2 cut(s) | 302, 407 |
| XbaI | TCTAGA | 1 cut(s) | 395 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 482, 530 |
| XmaJI | CCTAGG | 1 cut(s) | 479 |
| XmnI | GAANNNNTTC | 1 cut(s) | 81 |
| XspI | CTAG | 2 cut(s) | 396, 480 |