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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 41 |
| AccIII | TCCGGA | 1 cut(s) | 376 |
| AciI | CCGC | 1 cut(s) | 39 |
| AclWI | GGATC | 2 cut(s) | 286, 294 |
| AcuI | CTGAAG | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 126, 127 |
| AflII | CTTAAG | 1 cut(s) | 155 |
| AflIII | ACRYGT | 3 cut(s) | 261, 298, 364 |
| AgsI | TTSAA | 2 cut(s) | 214, 239 |
| AluBI | AGCT | 7 cut(s) | 17, 30, 181, 230, 242, 256, 311 |
| AluI | AGCT | 7 cut(s) | 17, 30, 181, 230, 242, 256, 311 |
| Alw26I | GTCTC | 1 cut(s) | 413 |
| AlwI | GGATC | 2 cut(s) | 286, 294 |
| Aor13HI | TCCGGA | 1 cut(s) | 376 |
| AoxI | GGCC | 1 cut(s) | 129 |
| ApaI | GGGCCC | 1 cut(s) | 133 |
| ApeKI | GCWGC | 3 cut(s) | 69, 149, 178 |
| AspLEI | GCGC | 3 cut(s) | 43, 52, 430 |
| AspS9I | GGNCC | 3 cut(s) | 129, 130, 202 |
| AvaII | GGWCC | 1 cut(s) | 202 |
| AxyI | CCTNAGG | 2 cut(s) | 198, 318 |
| BaeGI | GKGCMC | 1 cut(s) | 133 |
| BanII | GRGCYC | 1 cut(s) | 133 |
| BbvI | GCAGC | 3 cut(s) | 81, 136, 190 |
| BcoDI | GTCTC | 1 cut(s) | 413 |
| BfaI | CTAG | 2 cut(s) | 27, 66 |
| BfoI | RGCGCY | 1 cut(s) | 431 |
| BfrI | CTTAAG | 1 cut(s) | 155 |
| BisI | GCNGC | 4 cut(s) | 39, 70, 150, 179 |
| BlsI | GCNGC | 4 cut(s) | 40, 71, 151, 180 |
| Bme18I | GGWCC | 1 cut(s) | 202 |
| BmgT120I | GGNCC | 3 cut(s) | 129, 130, 202 |
| BmiI | GGNNCC | 2 cut(s) | 131, 204 |
| BmsI | GCATC | 1 cut(s) | 373 |
| BsaAI | YACGTR | 1 cut(s) | 301 |
| BsaJI | CCNNGG | 2 cut(s) | 125, 133 |
| BsaWI | WCCGGW | 1 cut(s) | 376 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 126, 127 |
| Bse21I | CCTNAGG | 2 cut(s) | 198, 318 |
| Bse3DI | GCAATG | 1 cut(s) | 112 |
| BseAI | TCCGGA | 1 cut(s) | 376 |
| BseDI | CCNNGG | 2 cut(s) | 125, 133 |
| BseGI | GGATG | 2 cut(s) | 373, 442 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 126, 127 |
| BseMI | GCAATG | 1 cut(s) | 112 |
| BseMII | CTCAG | 2 cut(s) | 243, 309 |
| BseSI | GKGCMC | 1 cut(s) | 133 |
| BseXI | GCAGC | 3 cut(s) | 81, 136, 190 |
| BseYI | CCCAGC | 1 cut(s) | 174 |
| BsgI | GTGCAG | 1 cut(s) | 135 |
| Bsh1236I | CGCG | 1 cut(s) | 41 |
| BshFI | GGCC | 1 cut(s) | 131 |
| BsiSI | CCGG | 1 cut(s) | 377 |
| BslFI | GGGAC | 1 cut(s) | 188 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 126, 127 |
| BsmAI | GTCTC | 1 cut(s) | 413 |
| BsmFI | GGGAC | 1 cut(s) | 188 |
| BsnI | GGCC | 1 cut(s) | 131 |
| Bsp120I | GGGCCC | 1 cut(s) | 129 |
| Bsp1286I | GDGCHC | 1 cut(s) | 133 |
| Bsp13I | TCCGGA | 1 cut(s) | 376 |
| Bsp143I | GATC | 3 cut(s) | 278, 286, 370 |
| BspACI | CCGC | 1 cut(s) | 39 |
| BspANI | GGCC | 1 cut(s) | 131 |
| BspCNI | CTCAG | 2 cut(s) | 244, 310 |
| BspEI | TCCGGA | 1 cut(s) | 376 |
| BspFNI | CGCG | 1 cut(s) | 41 |
| BspLI | GGNNCC | 2 cut(s) | 131, 204 |
| BspPI | GGATC | 2 cut(s) | 286, 294 |
| BspTI | CTTAAG | 1 cut(s) | 155 |
| BsrDI | GCAATG | 1 cut(s) | 112 |
| BssECI | CCNNGG | 2 cut(s) | 125, 133 |
| BssMI | GATC | 3 cut(s) | 278, 286, 370 |
| BssT1I | CCWWGG | 1 cut(s) | 133 |
| BstAFI | CTTAAG | 1 cut(s) | 155 |
| BstBAI | YACGTR | 1 cut(s) | 301 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstDEI | CTNAG | 3 cut(s) | 198, 252, 318 |
| BstDSI | CCRYGG | 1 cut(s) | 125 |
| BstF5I | GGATG | 2 cut(s) | 373, 442 |
| BstFNI | CGCG | 1 cut(s) | 41 |
| BstH2I | RGCGCY | 1 cut(s) | 431 |
| BstHHI | GCGC | 3 cut(s) | 43, 52, 430 |
| BstKTI | GATC | 3 cut(s) | 281, 289, 373 |
| BstMAI | GTCTC | 1 cut(s) | 413 |
| BstMBI | GATC | 3 cut(s) | 278, 286, 370 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 47, 49 |
| BstNSI | RCATGY | 2 cut(s) | 265, 368 |
| BstSLI | GKGCMC | 1 cut(s) | 133 |
| BstUI | CGCG | 1 cut(s) | 41 |
| BstV1I | GCAGC | 3 cut(s) | 81, 136, 190 |
| Bsu36I | CCTNAGG | 2 cut(s) | 198, 318 |
| BsuRI | GGCC | 1 cut(s) | 131 |
| BtgI | CCRYGG | 1 cut(s) | 125 |
| BtsCI | GGATG | 2 cut(s) | 373, 442 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| CfoI | GCGC | 3 cut(s) | 43, 52, 430 |
| Cfr13I | GGNCC | 3 cut(s) | 129, 130, 202 |
| CviAII | CATG | 2 cut(s) | 262, 365 |
| DdeI | CTNAG | 3 cut(s) | 198, 252, 318 |
| DpnI | GATC | 3 cut(s) | 280, 288, 372 |
| DpnII | GATC | 3 cut(s) | 278, 286, 370 |
| Eco130I | CCWWGG | 1 cut(s) | 133 |
| Eco24I | GRGCYC | 1 cut(s) | 133 |
| Eco32I | GATATC | 1 cut(s) | 405 |
| Eco47I | GGWCC | 1 cut(s) | 202 |
| Eco57I | CTGAAG | 1 cut(s) | 66 |
| Eco81I | CCTNAGG | 2 cut(s) | 198, 318 |
| EcoO109I | RGGNCCY | 1 cut(s) | 202 |
| EcoRV | GATATC | 1 cut(s) | 405 |
| EcoT14I | CCWWGG | 1 cut(s) | 133 |
| EcoT38I | GRGCYC | 1 cut(s) | 133 |
| ErhI | CCWWGG | 1 cut(s) | 133 |
| FaeI | CATG | 2 cut(s) | 265, 368 |
| FaiI | YATR | 5 cut(s) | 75, 263, 304, 366, 434 |
| FaqI | GGGAC | 1 cut(s) | 188 |
| FatI | CATG | 2 cut(s) | 261, 364 |
| Fnu4HI | GCNGC | 4 cut(s) | 39, 70, 150, 179 |
| FokI | GGATG | 1 cut(s) | 360 |
| FriOI | GRGCYC | 1 cut(s) | 133 |
| Fsp4HI | GCNGC | 4 cut(s) | 39, 70, 150, 179 |
| FspBI | CTAG | 2 cut(s) | 27, 66 |
| GlaI | GCGC | 3 cut(s) | 42, 51, 429 |
| GluI | GCNGC | 4 cut(s) | 39, 70, 150, 179 |
| GsaI | CCCAGC | 1 cut(s) | 178 |
| HaeII | RGCGCY | 1 cut(s) | 431 |
| HaeIII | GGCC | 1 cut(s) | 131 |
| HapII | CCGG | 1 cut(s) | 377 |
| HhaI | GCGC | 3 cut(s) | 43, 52, 430 |
| Hin1II | CATG | 2 cut(s) | 265, 368 |
| Hin6I | GCGC | 3 cut(s) | 41, 50, 428 |
| HinP1I | GCGC | 3 cut(s) | 41, 50, 428 |
| HincII | GTYRAC | 1 cut(s) | 140 |
| HindII | GTYRAC | 1 cut(s) | 140 |
| HinfI | GANTC | 2 cut(s) | 88, 350 |
| HpaII | CCGG | 1 cut(s) | 377 |
| Hpy166II | GTNNAC | 1 cut(s) | 140 |
| Hpy188I | TCNGA | 1 cut(s) | 409 |
| Hpy188III | TCNNGA | 5 cut(s) | 214, 276, 347, 377, 416 |
| Hpy8I | GTNNAC | 1 cut(s) | 140 |
| Hpy99I | CGWCG | 2 cut(s) | 84, 348 |
| HpyCH4IV | ACGT | 1 cut(s) | 300 |
| HpyCH4V | TGCA | 4 cut(s) | 152, 170, 362, 386 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 47, 49 |
| HpyF3I | CTNAG | 3 cut(s) | 198, 252, 318 |
| HpySE526I | ACGT | 1 cut(s) | 300 |
| Hsp92II | CATG | 2 cut(s) | 265, 368 |
| HspAI | GCGC | 3 cut(s) | 41, 50, 428 |
| Kpn2I | TCCGGA | 1 cut(s) | 376 |
| Kzo9I | GATC | 3 cut(s) | 278, 286, 370 |
| LmnI | GCTCC | 1 cut(s) | 235 |
| LpnPI | CCDG | 9 cut(s) | 38, 57, 188, 198, 242, 261, 330, 390, 401 |
| Lsp1109I | GCAGC | 3 cut(s) | 81, 136, 190 |
| LweI | GCATC | 1 cut(s) | 373 |
| MaeI | CTAG | 2 cut(s) | 27, 66 |
| MaeII | ACGT | 1 cut(s) | 300 |
| MaeIII | GTNAC | 1 cut(s) | 294 |
| MalI | GATC | 3 cut(s) | 280, 288, 372 |
| MboI | GATC | 3 cut(s) | 278, 286, 370 |
| MboII | GAAGA | 2 cut(s) | 16, 392 |
| MhlI | GDGCHC | 1 cut(s) | 133 |
| MluCI | AATT | 1 cut(s) | 165 |
| MlyI | GAGTC | 1 cut(s) | 359 |
| MnlI | CCTC | 1 cut(s) | 313 |
| MroI | TCCGGA | 1 cut(s) | 376 |
| MseI | TTAA | 1 cut(s) | 156 |
| MslI | CAYNNNNRTG | 2 cut(s) | 96, 301 |
| MspCI | CTTAAG | 1 cut(s) | 155 |
| MspI | CCGG | 1 cut(s) | 377 |
| MvnI | CGCG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 47, 49 |
| NdeII | GATC | 3 cut(s) | 278, 286, 370 |
| NlaIII | CATG | 2 cut(s) | 265, 368 |
| NlaIV | GGNNCC | 2 cut(s) | 131, 204 |
| NmeAIII | GCCGAG | 1 cut(s) | 332 |
| NmuCI | GTSAC | 1 cut(s) | 294 |
| NspI | RCATGY | 2 cut(s) | 265, 368 |
| PciI | ACATGT | 2 cut(s) | 261, 364 |
| PfeI | GAWTC | 1 cut(s) | 88 |
| PkrI | GCNGC | 4 cut(s) | 40, 71, 151, 180 |
| PleI | GAGTC | 1 cut(s) | 358 |
| PpsI | GAGTC | 1 cut(s) | 358 |
| Ppu21I | YACGTR | 1 cut(s) | 301 |
| PpuMI | RGGWCCY | 1 cut(s) | 202 |
| PscI | ACATGT | 2 cut(s) | 261, 364 |
| Psp5II | RGGWCCY | 1 cut(s) | 202 |
| PspFI | CCCAGC | 1 cut(s) | 174 |
| PspN4I | GGNNCC | 2 cut(s) | 131, 204 |
| PspOMI | GGGCCC | 1 cut(s) | 129 |
| PspPI | GGNCC | 3 cut(s) | 129, 130, 202 |
| PspPPI | RGGWCCY | 1 cut(s) | 202 |
| RseI | CAYNNNNRTG | 2 cut(s) | 96, 301 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 4 cut(s) | 39, 70, 150, 179 |
| Sau3AI | GATC | 3 cut(s) | 278, 286, 370 |
| Sau96I | GGNCC | 3 cut(s) | 129, 130, 202 |
| SchI | GAGTC | 1 cut(s) | 359 |
| SduI | GDGCHC | 1 cut(s) | 133 |
| SfaNI | GCATC | 1 cut(s) | 373 |
| SinI | GGWCC | 1 cut(s) | 202 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 96, 301 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| Sse9I | AATT | 1 cut(s) | 165 |
| SsiI | CCGC | 1 cut(s) | 39 |
| SspMI | CTAG | 2 cut(s) | 27, 66 |
| StyI | CCWWGG | 1 cut(s) | 133 |
| TaiI | ACGT | 1 cut(s) | 303 |
| TaqI | TCGA | 3 cut(s) | 19, 32, 369 |
| TasI | AATT | 1 cut(s) | 165 |
| TauI | GCSGC | 1 cut(s) | 41 |
| TfiI | GAWTC | 1 cut(s) | 88 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TseFI | GTSAC | 1 cut(s) | 294 |
| TseI | GCWGC | 3 cut(s) | 69, 149, 178 |
| Tsp45I | GTSAC | 1 cut(s) | 294 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| Vha464I | CTTAAG | 1 cut(s) | 155 |
| VpaK11BI | GGWCC | 1 cut(s) | 202 |
| XceI | RCATGY | 2 cut(s) | 265, 368 |
| XspI | CTAG | 2 cut(s) | 27, 66 |