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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 342 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 833 |
| AccII | CGCG | 1 cut(s) | 218 |
| AciI | CCGC | 1 cut(s) | 310 |
| AclWI | GGATC | 4 cut(s) | 61, 74, 783, 825 |
| AcoI | YGGCCR | 1 cut(s) | 385 |
| AcyI | GRCGYC | 1 cut(s) | 639 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 241, 547, 833 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 595 |
| AgsI | TTSAA | 4 cut(s) | 22, 167, 325, 459 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 4 cut(s) | 155, 185, 259, 353 |
| AluI | AGCT | 4 cut(s) | 155, 185, 259, 353 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| Alw26I | GTCTC | 4 cut(s) | 32, 365, 372, 445 |
| AlwI | GGATC | 4 cut(s) | 61, 74, 783, 825 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 833 |
| AoxI | GGCC | 1 cut(s) | 385 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 354 |
| AspLEI | GCGC | 2 cut(s) | 81, 220 |
| AspS9I | GGNCC | 1 cut(s) | 527 |
| AsuHPI | GGTGA | 1 cut(s) | 647 |
| AvaII | GGWCC | 1 cut(s) | 527 |
| BalI | TGGCCA | 1 cut(s) | 387 |
| BamHI | GGATCC | 1 cut(s) | 66 |
| BbsI | GAAGAC | 2 cut(s) | 252, 813 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BccI | CCATC | 4 cut(s) | 92, 122, 367, 776 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 4 cut(s) | 32, 365, 372, 445 |
| BfaI | CTAG | 2 cut(s) | 35, 126 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BglII | AGATCT | 1 cut(s) | 787 |
| Bme18I | GGWCC | 1 cut(s) | 527 |
| BmgT120I | GGNCC | 1 cut(s) | 527 |
| BmiI | GGNNCC | 4 cut(s) | 68, 581, 619, 696 |
| BpiI | GAAGAC | 2 cut(s) | 252, 813 |
| BpuEI | CTTGAG | 1 cut(s) | 347 |
| BsaBI | GATNNNNATC | 3 cut(s) | 410, 786, 792 |
| BsaHI | GRCGYC | 1 cut(s) | 639 |
| BsaJI | CCNNGG | 1 cut(s) | 583 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 125, 155 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 241, 547, 833 |
| Bse1I | ACTGG | 2 cut(s) | 49, 838 |
| Bse8I | GATNNNNATC | 3 cut(s) | 410, 786, 792 |
| BseDI | CCNNGG | 1 cut(s) | 583 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 3 cut(s) | 410, 786, 792 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 241, 547, 833 |
| BseNI | ACTGG | 2 cut(s) | 49, 838 |
| BsgI | GTGCAG | 1 cut(s) | 69 |
| Bsh1236I | CGCG | 1 cut(s) | 218 |
| BshFI | GGCC | 1 cut(s) | 387 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| BsiSI | CCGG | 1 cut(s) | 624 |
| BslFI | GGGAC | 1 cut(s) | 521 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 241, 547, 833 |
| BsmAI | GTCTC | 4 cut(s) | 32, 365, 372, 445 |
| BsmBI | CGTCTC | 2 cut(s) | 365, 445 |
| BsmFI | GGGAC | 1 cut(s) | 521 |
| BsnI | GGCC | 1 cut(s) | 387 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| Bsp143I | GATC | 7 cut(s) | 66, 411, 686, 775, 787, 793, 817 |
| Bsp19I | CCATGG | 1 cut(s) | 583 |
| BspACI | CCGC | 1 cut(s) | 310 |
| BspANI | GGCC | 1 cut(s) | 387 |
| BspFNI | CGCG | 1 cut(s) | 218 |
| BspLI | GGNNCC | 4 cut(s) | 68, 581, 619, 696 |
| BspPI | GGATC | 4 cut(s) | 61, 74, 783, 825 |
| BspQI | GCTCTTC | 1 cut(s) | 360 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 2 cut(s) | 49, 838 |
| BssECI | CCNNGG | 1 cut(s) | 583 |
| BssMI | GATC | 7 cut(s) | 66, 411, 686, 775, 787, 793, 817 |
| BssNI | GRCGYC | 1 cut(s) | 639 |
| BssT1I | CCWWGG | 1 cut(s) | 583 |
| Bst6I | CTCTTC | 2 cut(s) | 360, 596 |
| BstACI | GRCGYC | 1 cut(s) | 639 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 573 |
| BstDEI | CTNAG | 2 cut(s) | 498, 797 |
| BstDSI | CCRYGG | 1 cut(s) | 583 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 1 cut(s) | 218 |
| BstHHI | GCGC | 2 cut(s) | 81, 220 |
| BstKTI | GATC | 7 cut(s) | 69, 414, 689, 778, 790, 796, 820 |
| BstMAI | GTCTC | 4 cut(s) | 32, 365, 372, 445 |
| BstMBI | GATC | 7 cut(s) | 66, 411, 686, 775, 787, 793, 817 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 491, 677 |
| BstNSI | RCATGY | 3 cut(s) | 575, 599, 671 |
| BstUI | CGCG | 1 cut(s) | 218 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 813 |
| BstX2I | RGATCY | 2 cut(s) | 66, 787 |
| BstYI | RGATCY | 2 cut(s) | 66, 787 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 387 |
| BtgI | CCRYGG | 1 cut(s) | 583 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 573 |
| CaiI | CAGNNNCTG | 1 cut(s) | 833 |
| CfoI | GCGC | 2 cut(s) | 81, 220 |
| Cfr13I | GGNCC | 1 cut(s) | 527 |
| CseI | GACGC | 2 cut(s) | 224, 647 |
| CviAII | CATG | 6 cut(s) | 208, 572, 584, 596, 668, 763 |
| DdeI | CTNAG | 2 cut(s) | 498, 797 |
| DpnI | GATC | 7 cut(s) | 68, 413, 688, 777, 789, 795, 819 |
| DpnII | GATC | 7 cut(s) | 66, 411, 686, 775, 787, 793, 817 |
| EaeI | YGGCCR | 1 cut(s) | 385 |
| Eam1104I | CTCTTC | 2 cut(s) | 360, 596 |
| EarI | CTCTTC | 2 cut(s) | 360, 596 |
| Eco130I | CCWWGG | 1 cut(s) | 583 |
| Eco47I | GGWCC | 1 cut(s) | 527 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoT14I | CCWWGG | 1 cut(s) | 583 |
| ErhI | CCWWGG | 1 cut(s) | 583 |
| Esp3I | CGTCTC | 2 cut(s) | 365, 445 |
| FaeI | CATG | 6 cut(s) | 211, 575, 587, 599, 671, 766 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 521 |
| FatI | CATG | 6 cut(s) | 207, 571, 583, 595, 667, 762 |
| FokI | GGATG | 1 cut(s) | 101 |
| FspBI | CTAG | 2 cut(s) | 35, 126 |
| GlaI | GCGC | 2 cut(s) | 80, 219 |
| HaeIII | GGCC | 1 cut(s) | 387 |
| HapII | CCGG | 1 cut(s) | 624 |
| HgaI | GACGC | 2 cut(s) | 224, 647 |
| HhaI | GCGC | 2 cut(s) | 81, 220 |
| Hin1I | GRCGYC | 1 cut(s) | 639 |
| Hin1II | CATG | 6 cut(s) | 211, 575, 587, 599, 671, 766 |
| Hin6I | GCGC | 2 cut(s) | 79, 218 |
| HinP1I | GCGC | 2 cut(s) | 79, 218 |
| HincII | GTYRAC | 1 cut(s) | 593 |
| HindII | GTYRAC | 1 cut(s) | 593 |
| HinfI | GANTC | 3 cut(s) | 281, 421, 489 |
| HpaII | CCGG | 1 cut(s) | 624 |
| HphI | GGTGA | 1 cut(s) | 647 |
| Hpy166II | GTNNAC | 1 cut(s) | 593 |
| Hpy188I | TCNGA | 5 cut(s) | 71, 132, 349, 372, 471 |
| Hpy188III | TCNNGA | 7 cut(s) | 107, 278, 415, 740, 779, 791, 821 |
| Hpy8I | GTNNAC | 1 cut(s) | 593 |
| HpyAV | CCTTC | 2 cut(s) | 442, 545 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 3 cut(s) | 50, 575, 671 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 491, 677 |
| HpyF3I | CTNAG | 2 cut(s) | 498, 797 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92I | GRCGYC | 1 cut(s) | 639 |
| Hsp92II | CATG | 6 cut(s) | 211, 575, 587, 599, 671, 766 |
| HspAI | GCGC | 2 cut(s) | 79, 218 |
| Kzo9I | GATC | 7 cut(s) | 66, 411, 686, 775, 787, 793, 817 |
| LguI | GCTCTTC | 1 cut(s) | 360 |
| LmnI | GCTCC | 3 cut(s) | 225, 617, 694 |
| MaeI | CTAG | 2 cut(s) | 35, 126 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 5, 635 |
| MalI | GATC | 7 cut(s) | 68, 413, 688, 777, 789, 795, 819 |
| MboI | GATC | 7 cut(s) | 66, 411, 686, 775, 787, 793, 817 |
| MboII | GAAGA | 5 cut(s) | 257, 347, 430, 613, 818 |
| MflI | RGATCY | 2 cut(s) | 66, 787 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MlsI | TGGCCA | 1 cut(s) | 387 |
| MluCI | AATT | 3 cut(s) | 463, 511, 757 |
| MluNI | TGGCCA | 1 cut(s) | 387 |
| MlyI | GAGTC | 1 cut(s) | 275 |
| MmeI | TCCRAC | 1 cut(s) | 686 |
| Mox20I | TGGCCA | 1 cut(s) | 387 |
| MroXI | GAANNNNTTC | 1 cut(s) | 354 |
| MscI | TGGCCA | 1 cut(s) | 387 |
| MseI | TTAA | 2 cut(s) | 90, 847 |
| MslI | CAYNNNNRTG | 2 cut(s) | 194, 210 |
| Msp20I | TGGCCA | 1 cut(s) | 387 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 624 |
| MvnI | CGCG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 491, 677 |
| NcoI | CCATGG | 1 cut(s) | 583 |
| NdeII | GATC | 7 cut(s) | 66, 411, 686, 775, 787, 793, 817 |
| NlaIII | CATG | 6 cut(s) | 211, 575, 587, 599, 671, 766 |
| NlaIV | GGNNCC | 4 cut(s) | 68, 581, 619, 696 |
| NmuCI | GTSAC | 1 cut(s) | 635 |
| NspI | RCATGY | 3 cut(s) | 575, 599, 671 |
| PaeI | GCATGC | 1 cut(s) | 575 |
| PciI | ACATGT | 1 cut(s) | 595 |
| PciSI | GCTCTTC | 1 cut(s) | 360 |
| PdmI | GAANNNNTTC | 1 cut(s) | 354 |
| PfeI | GAWTC | 2 cut(s) | 421, 489 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 833 |
| PleI | GAGTC | 1 cut(s) | 275 |
| PpsI | GAGTC | 1 cut(s) | 275 |
| PscI | ACATGT | 1 cut(s) | 595 |
| PsiI | TTATAA | 1 cut(s) | 342 |
| PspN4I | GGNNCC | 4 cut(s) | 68, 581, 619, 696 |
| PspPI | GGNCC | 1 cut(s) | 527 |
| PstNI | CAGNNNCTG | 1 cut(s) | 833 |
| PsuI | RGATCY | 2 cut(s) | 66, 787 |
| RseI | CAYNNNNRTG | 2 cut(s) | 194, 210 |
| SapI | GCTCTTC | 1 cut(s) | 360 |
| SaqAI | TTAA | 2 cut(s) | 90, 847 |
| Sau3AI | GATC | 7 cut(s) | 66, 411, 686, 775, 787, 793, 817 |
| Sau96I | GGNCC | 1 cut(s) | 527 |
| SchI | GAGTC | 1 cut(s) | 275 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SinI | GGWCC | 1 cut(s) | 527 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 194, 210 |
| SmlI | CTYRAG | 2 cut(s) | 89, 362 |
| SmoI | CTYRAG | 2 cut(s) | 89, 362 |
| SphI | GCATGC | 1 cut(s) | 575 |
| Sse9I | AATT | 3 cut(s) | 463, 511, 757 |
| SsiI | CCGC | 1 cut(s) | 310 |
| SspMI | CTAG | 2 cut(s) | 35, 126 |
| StyI | CCWWGG | 1 cut(s) | 583 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 3 cut(s) | 414, 685, 792 |
| TasI | AATT | 3 cut(s) | 463, 511, 757 |
| TfiI | GAWTC | 2 cut(s) | 421, 489 |
| Tru1I | TTAA | 2 cut(s) | 90, 847 |
| Tru9I | TTAA | 2 cut(s) | 90, 847 |
| TseFI | GTSAC | 1 cut(s) | 635 |
| Tsp45I | GTSAC | 1 cut(s) | 635 |
| TspDTI | ATGAA | 1 cut(s) | 224 |
| TspGWI | ACGGA | 1 cut(s) | 592 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 833 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 527 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XceI | RCATGY | 3 cut(s) | 575, 599, 671 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XmnI | GAANNNNTTC | 1 cut(s) | 354 |
| XspI | CTAG | 2 cut(s) | 35, 126 |