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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 569 |
| AciI | CCGC | 2 cut(s) | 711, 752 |
| AcoI | YGGCCR | 1 cut(s) | 556 |
| AcyI | GRCGYC | 1 cut(s) | 570 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 539, 672 |
| AgsI | TTSAA | 1 cut(s) | 122 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 6 cut(s) | 155, 161, 466, 476, 692, 743 |
| AluI | AGCT | 6 cut(s) | 155, 161, 466, 476, 692, 743 |
| Alw21I | GWGCWC | 3 cut(s) | 468, 636, 694 |
| Alw26I | GTCTC | 4 cut(s) | 292, 400, 523, 537 |
| AoxI | GGCC | 2 cut(s) | 93, 556 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| AspLEI | GCGC | 1 cut(s) | 572 |
| AspS9I | GGNCC | 1 cut(s) | 447 |
| AsuHPI | GGTGA | 2 cut(s) | 83, 700 |
| AvaII | GGWCC | 1 cut(s) | 447 |
| BaeGI | GKGCMC | 1 cut(s) | 679 |
| BalI | TGGCCA | 1 cut(s) | 558 |
| BanI | GGYRCC | 1 cut(s) | 569 |
| BanII | GRGCYC | 2 cut(s) | 468, 694 |
| BauI | CACGAG | 1 cut(s) | 693 |
| Bbv12I | GWGCWC | 3 cut(s) | 468, 636, 694 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 400, 438, 581 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 4 cut(s) | 292, 400, 523, 537 |
| BfaI | CTAG | 3 cut(s) | 51, 338, 779 |
| BfoI | RGCGCY | 1 cut(s) | 573 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlpI | GCTNAGC | 1 cut(s) | 630 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 447 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 447 |
| BmiI | GGNNCC | 1 cut(s) | 571 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 346 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 630 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaHI | GRCGYC | 1 cut(s) | 570 |
| BsaI | GGTCTC | 2 cut(s) | 292, 523 |
| BsaWI | WCCGGW | 1 cut(s) | 665 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 539, 672 |
| Bse1I | ACTGG | 3 cut(s) | 24, 49, 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseGI | GGATG | 4 cut(s) | 210, 504, 589, 778 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 539, 672 |
| BseMII | CTCAG | 1 cut(s) | 621 |
| BseNI | ACTGG | 3 cut(s) | 24, 49, 244 |
| BseSI | GKGCMC | 1 cut(s) | 679 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 2 cut(s) | 95, 558 |
| BshNI | GGYRCC | 1 cut(s) | 569 |
| BsiHKAI | GWGCWC | 3 cut(s) | 468, 636, 694 |
| BsiSI | CCGG | 1 cut(s) | 666 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 539, 672 |
| BsmAI | GTCTC | 4 cut(s) | 292, 400, 523, 537 |
| BsmBI | CGTCTC | 1 cut(s) | 400 |
| BsmI | GAATGC | 1 cut(s) | 108 |
| BsnI | GGCC | 2 cut(s) | 95, 558 |
| Bso31I | GGTCTC | 2 cut(s) | 292, 523 |
| Bsp1286I | GDGCHC | 4 cut(s) | 468, 636, 679, 694 |
| Bsp143I | GATC | 2 cut(s) | 763, 775 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 630 |
| BspACI | CCGC | 2 cut(s) | 711, 752 |
| BspANI | GGCC | 2 cut(s) | 95, 558 |
| BspCNI | CTCAG | 1 cut(s) | 622 |
| BspHI | TCATGA | 1 cut(s) | 460 |
| BspLI | GGNNCC | 1 cut(s) | 571 |
| BspT107I | GGYRCC | 1 cut(s) | 569 |
| BspTNI | GGTCTC | 2 cut(s) | 292, 523 |
| BsrI | ACTGG | 3 cut(s) | 24, 49, 244 |
| BssMI | GATC | 2 cut(s) | 763, 775 |
| BssNI | GRCGYC | 1 cut(s) | 570 |
| BssSI | CACGAG | 1 cut(s) | 693 |
| Bst2BI | CACGAG | 1 cut(s) | 693 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 439 |
| BstACI | GRCGYC | 1 cut(s) | 570 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 715 |
| BstDEI | CTNAG | 2 cut(s) | 582, 630 |
| BstF5I | GGATG | 4 cut(s) | 210, 504, 589, 778 |
| BstH2I | RGCGCY | 1 cut(s) | 573 |
| BstHHI | GCGC | 1 cut(s) | 572 |
| BstKTI | GATC | 2 cut(s) | 766, 778 |
| BstMAI | GTCTC | 4 cut(s) | 292, 400, 523, 537 |
| BstMBI | GATC | 2 cut(s) | 763, 775 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 608, 719, 740, 749 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSLI | GKGCMC | 1 cut(s) | 679 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 566 |
| BsuRI | GGCC | 2 cut(s) | 95, 558 |
| BtgZI | GCGATG | 1 cut(s) | 374 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 4 cut(s) | 210, 504, 589, 778 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 715 |
| CciI | TCATGA | 1 cut(s) | 460 |
| CfoI | GCGC | 1 cut(s) | 572 |
| Cfr13I | GGNCC | 1 cut(s) | 447 |
| CseI | GACGC | 1 cut(s) | 608 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 461, 497, 560 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 582, 630 |
| DinI | GGCGCC | 1 cut(s) | 571 |
| DpnI | GATC | 2 cut(s) | 765, 777 |
| DpnII | GATC | 2 cut(s) | 763, 775 |
| DraI | TTTAAA | 1 cut(s) | 607 |
| EaeI | YGGCCR | 1 cut(s) | 556 |
| Ecl136II | GAGCTC | 2 cut(s) | 466, 692 |
| Eco24I | GRGCYC | 2 cut(s) | 468, 694 |
| Eco31I | GGTCTC | 2 cut(s) | 292, 523 |
| Eco32I | GATATC | 2 cut(s) | 56, 76 |
| Eco47I | GGWCC | 1 cut(s) | 447 |
| Eco53kI | GAGCTC | 2 cut(s) | 466, 692 |
| EcoICRI | GAGCTC | 2 cut(s) | 466, 692 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 2 cut(s) | 56, 76 |
| EcoT38I | GRGCYC | 2 cut(s) | 468, 694 |
| EgeI | GGCGCC | 1 cut(s) | 571 |
| EheI | GGCGCC | 1 cut(s) | 571 |
| Esp3I | CGTCTC | 1 cut(s) | 400 |
| FaeI | CATG | 3 cut(s) | 464, 500, 563 |
| FatI | CATG | 3 cut(s) | 460, 496, 559 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 491, 576 |
| FriOI | GRGCYC | 2 cut(s) | 468, 694 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 51, 338, 779 |
| GlaI | GCGC | 1 cut(s) | 571 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 573 |
| HaeIII | GGCC | 2 cut(s) | 95, 558 |
| HapII | CCGG | 1 cut(s) | 666 |
| HgaI | GACGC | 1 cut(s) | 608 |
| HhaI | GCGC | 1 cut(s) | 572 |
| Hin1I | GRCGYC | 1 cut(s) | 570 |
| Hin1II | CATG | 3 cut(s) | 464, 500, 563 |
| Hin6I | GCGC | 1 cut(s) | 570 |
| HinP1I | GCGC | 1 cut(s) | 570 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 115, 220, 236, 320, 376, 586 |
| HpaII | CCGG | 1 cut(s) | 666 |
| HphI | GGTGA | 2 cut(s) | 83, 700 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 119, 332, 461, 528, 651, 695, 779 |
| Hpy99I | CGWCG | 1 cut(s) | 602 |
| HpyAV | CCTTC | 2 cut(s) | 397, 619 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 439 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 2 cut(s) | 413, 717 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 608, 719, 740, 749 |
| HpyF3I | CTNAG | 2 cut(s) | 582, 630 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 570 |
| Hsp92II | CATG | 3 cut(s) | 464, 500, 563 |
| HspAI | GCGC | 1 cut(s) | 570 |
| KasI | GGCGCC | 1 cut(s) | 569 |
| Kzo9I | GATC | 2 cut(s) | 763, 775 |
| LmnI | GCTCC | 1 cut(s) | 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 346 |
| MaeI | CTAG | 3 cut(s) | 51, 338, 779 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 3 cut(s) | 5, 317, 706 |
| MalI | GATC | 2 cut(s) | 765, 777 |
| MboI | GATC | 2 cut(s) | 763, 775 |
| MboII | GAAGA | 4 cut(s) | 275, 308, 710, 773 |
| MhlI | GDGCHC | 4 cut(s) | 468, 636, 679, 694 |
| MlsI | TGGCCA | 1 cut(s) | 558 |
| MluCI | AATT | 2 cut(s) | 523, 702 |
| MluNI | TGGCCA | 1 cut(s) | 558 |
| Mly113I | GGCGCC | 1 cut(s) | 570 |
| MlyI | GAGTC | 4 cut(s) | 214, 314, 370, 595 |
| MnlI | CCTC | 5 cut(s) | 181, 366, 532, 562, 624 |
| Mox20I | TGGCCA | 1 cut(s) | 558 |
| MscI | TGGCCA | 1 cut(s) | 558 |
| MseI | TTAA | 1 cut(s) | 606 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 231, 509, 564, 639 |
| Msp20I | TGGCCA | 1 cut(s) | 558 |
| MspI | CCGG | 1 cut(s) | 666 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| Mva1269I | GAATGC | 1 cut(s) | 108 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 608, 719, 740, 749 |
| NarI | GGCGCC | 1 cut(s) | 570 |
| NdeII | GATC | 2 cut(s) | 763, 775 |
| NlaIII | CATG | 3 cut(s) | 464, 500, 563 |
| NlaIV | GGNNCC | 1 cut(s) | 571 |
| NmuCI | GTSAC | 2 cut(s) | 317, 706 |
| PagI | TCATGA | 1 cut(s) | 460 |
| PctI | GAATGC | 1 cut(s) | 108 |
| PfeI | GAWTC | 2 cut(s) | 115, 236 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 4 cut(s) | 214, 314, 370, 594 |
| PluTI | GGCGCC | 1 cut(s) | 573 |
| PpsI | GAGTC | 4 cut(s) | 214, 314, 370, 594 |
| Psp124BI | GAGCTC | 2 cut(s) | 468, 694 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 571 |
| PspPI | GGNCC | 1 cut(s) | 447 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 231, 509, 564, 639 |
| SacI | GAGCTC | 2 cut(s) | 468, 694 |
| SaqAI | TTAA | 1 cut(s) | 606 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 763, 775 |
| Sau96I | GGNCC | 1 cut(s) | 447 |
| SchI | GAGTC | 4 cut(s) | 214, 314, 370, 595 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 4 cut(s) | 468, 636, 679, 694 |
| SfaNI | GCATC | 1 cut(s) | 346 |
| SfoI | GGCGCC | 1 cut(s) | 571 |
| SinI | GGWCC | 1 cut(s) | 447 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 231, 509, 564, 639 |
| SmlI | CTYRAG | 2 cut(s) | 89, 156 |
| SmoI | CTYRAG | 2 cut(s) | 89, 156 |
| Sse9I | AATT | 2 cut(s) | 523, 702 |
| SsiI | CCGC | 2 cut(s) | 711, 752 |
| SspDI | GGCGCC | 1 cut(s) | 569 |
| SspMI | CTAG | 3 cut(s) | 51, 338, 779 |
| SstI | GAGCTC | 2 cut(s) | 468, 694 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 2 cut(s) | 145, 439 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 4 cut(s) | 294, 424, 527, 652 |
| TasI | AATT | 2 cut(s) | 523, 702 |
| TfiI | GAWTC | 2 cut(s) | 115, 236 |
| Tru1I | TTAA | 1 cut(s) | 606 |
| Tru9I | TTAA | 1 cut(s) | 606 |
| TseFI | GTSAC | 2 cut(s) | 317, 706 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 706 |
| TspDTI | ATGAA | 5 cut(s) | 272, 276, 449, 494, 638 |
| TspGWI | ACGGA | 2 cut(s) | 305, 382 |
| VpaK11BI | GGWCC | 1 cut(s) | 447 |
| XbaI | TCTAGA | 2 cut(s) | 50, 778 |
| XspI | CTAG | 3 cut(s) | 51, 338, 779 |