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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 642 |
| AccII | CGCG | 1 cut(s) | 627 |
| AccIII | TCCGGA | 1 cut(s) | 607 |
| AciI | CCGC | 3 cut(s) | 37, 319, 625 |
| AclWI | GGATC | 1 cut(s) | 579 |
| AcsI | RAATTY | 2 cut(s) | 386, 611 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 638 |
| AgsI | TTSAA | 2 cut(s) | 334, 616 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 242 |
| AjiI | CACGTC | 1 cut(s) | 94 |
| AjnI | CCWGG | 2 cut(s) | 63, 87 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 246, 278 |
| AluBI | AGCT | 4 cut(s) | 119, 315, 520, 530 |
| AluI | AGCT | 4 cut(s) | 119, 315, 520, 530 |
| Alw21I | GWGCWC | 1 cut(s) | 522 |
| Alw26I | GTCTC | 3 cut(s) | 140, 250, 454 |
| AlwI | GGATC | 1 cut(s) | 579 |
| Ama87I | CYCGRG | 1 cut(s) | 77 |
| Aor13HI | TCCGGA | 1 cut(s) | 607 |
| AoxI | GGCC | 1 cut(s) | 51 |
| ApeKI | GCWGC | 1 cut(s) | 137 |
| ApoI | RAATTY | 2 cut(s) | 386, 611 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 363 |
| AspLEI | GCGC | 1 cut(s) | 629 |
| AsuNHI | GCTAGC | 1 cut(s) | 83 |
| AvaI | CYCGRG | 1 cut(s) | 77 |
| BaeGI | GKGCMC | 1 cut(s) | 645 |
| BanI | GGYRCC | 1 cut(s) | 642 |
| BanII | GRGCYC | 1 cut(s) | 522 |
| BbsI | GAAGAC | 2 cut(s) | 241, 434 |
| Bbv12I | GWGCWC | 1 cut(s) | 522 |
| BbvI | GCAGC | 1 cut(s) | 149 |
| BccI | CCATC | 3 cut(s) | 50, 300, 454 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 473, 507 |
| BciT130I | CCWGG | 2 cut(s) | 65, 89 |
| BciVI | GTATCC | 1 cut(s) | 61 |
| BcoDI | GTCTC | 3 cut(s) | 140, 250, 454 |
| BfaI | CTAG | 3 cut(s) | 8, 84, 296 |
| BfmI | CTRYAG | 1 cut(s) | 492 |
| BfuI | GTATCC | 1 cut(s) | 61 |
| BisI | GCNGC | 2 cut(s) | 138, 625 |
| BlsI | GCNGC | 2 cut(s) | 139, 626 |
| Bme1390I | CCNGG | 2 cut(s) | 65, 89 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 242 |
| BmeT110I | CYCGRG | 1 cut(s) | 77 |
| BmgBI | CACGTC | 1 cut(s) | 94 |
| BmiI | GGNNCC | 1 cut(s) | 644 |
| BmrFI | CCNGG | 2 cut(s) | 65, 89 |
| BmsI | GCATC | 1 cut(s) | 52 |
| BmtI | GCTAGC | 1 cut(s) | 87 |
| BpiI | GAAGAC | 2 cut(s) | 241, 434 |
| BpmI | CTGGAG | 1 cut(s) | 185 |
| BpuEI | CTTGAG | 2 cut(s) | 32, 99 |
| Bsa29I | ATCGAT | 1 cut(s) | 483 |
| BsaJI | CCNNGG | 1 cut(s) | 588 |
| BsaWI | WCCGGW | 1 cut(s) | 607 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 638 |
| Bse1I | ACTGG | 1 cut(s) | 202 |
| BseAI | TCCGGA | 1 cut(s) | 607 |
| BseBI | CCWGG | 2 cut(s) | 65, 89 |
| BseCI | ATCGAT | 1 cut(s) | 483 |
| BseDI | CCNNGG | 1 cut(s) | 588 |
| BseGI | GGATG | 3 cut(s) | 168, 196, 558 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 638 |
| BseNI | ACTGG | 1 cut(s) | 202 |
| BseSI | GKGCMC | 1 cut(s) | 645 |
| BseXI | GCAGC | 1 cut(s) | 149 |
| Bsh1236I | CGCG | 1 cut(s) | 627 |
| BshFI | GGCC | 1 cut(s) | 53 |
| BshNI | GGYRCC | 1 cut(s) | 642 |
| BshVI | ATCGAT | 1 cut(s) | 483 |
| BsiHKAI | GWGCWC | 1 cut(s) | 522 |
| BsiHKCI | CYCGRG | 1 cut(s) | 77 |
| BsiSI | CCGG | 1 cut(s) | 608 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 638 |
| BsmAI | GTCTC | 3 cut(s) | 140, 250, 454 |
| BsmBI | CGTCTC | 2 cut(s) | 250, 454 |
| BsnI | GGCC | 1 cut(s) | 53 |
| BsoBI | CYCGRG | 1 cut(s) | 77 |
| Bsp1286I | GDGCHC | 2 cut(s) | 522, 645 |
| Bsp13I | TCCGGA | 1 cut(s) | 607 |
| Bsp143I | GATC | 1 cut(s) | 584 |
| BspACI | CCGC | 3 cut(s) | 37, 319, 625 |
| BspANI | GGCC | 1 cut(s) | 53 |
| BspDI | ATCGAT | 1 cut(s) | 483 |
| BspEI | TCCGGA | 1 cut(s) | 607 |
| BspFNI | CGCG | 1 cut(s) | 627 |
| BspHI | TCATGA | 1 cut(s) | 514 |
| BspLI | GGNNCC | 1 cut(s) | 644 |
| BspMAI | CTGCAG | 1 cut(s) | 496 |
| BspOI | GCTAGC | 1 cut(s) | 87 |
| BspPI | GGATC | 1 cut(s) | 579 |
| BspT107I | GGYRCC | 1 cut(s) | 642 |
| BsrI | ACTGG | 1 cut(s) | 202 |
| BssECI | CCNNGG | 1 cut(s) | 588 |
| BssMI | GATC | 1 cut(s) | 584 |
| Bst2UI | CCWGG | 2 cut(s) | 65, 89 |
| Bst4CI | ACNGT | 2 cut(s) | 103, 240 |
| BstC8I | GCNNGC | 2 cut(s) | 41, 85 |
| BstDEI | CTNAG | 3 cut(s) | 142, 468, 633 |
| BstDSI | CCRYGG | 1 cut(s) | 588 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 636 |
| BstF5I | GGATG | 3 cut(s) | 168, 196, 558 |
| BstFNI | CGCG | 1 cut(s) | 627 |
| BstHHI | GCGC | 1 cut(s) | 629 |
| BstKTI | GATC | 1 cut(s) | 587 |
| BstMAI | GTCTC | 3 cut(s) | 140, 250, 454 |
| BstMBI | GATC | 1 cut(s) | 584 |
| BstNI | CCWGG | 2 cut(s) | 65, 89 |
| BstSCI | CCNGG | 2 cut(s) | 63, 87 |
| BstSFI | CTRYAG | 1 cut(s) | 492 |
| BstSLI | GKGCMC | 1 cut(s) | 645 |
| BstUI | CGCG | 1 cut(s) | 627 |
| BstV1I | GCAGC | 1 cut(s) | 149 |
| BstV2I | GAAGAC | 2 cut(s) | 241, 434 |
| BstX2I | RGATCY | 1 cut(s) | 584 |
| BstYI | RGATCY | 1 cut(s) | 584 |
| Bsu15I | ATCGAT | 1 cut(s) | 483 |
| BsuI | GTATCC | 1 cut(s) | 61 |
| BsuRI | GGCC | 1 cut(s) | 53 |
| BsuTUI | ATCGAT | 1 cut(s) | 483 |
| BtgI | CCRYGG | 1 cut(s) | 588 |
| BtgZI | GCGATG | 1 cut(s) | 428 |
| BtrI | CACGTC | 1 cut(s) | 94 |
| BtsCI | GGATG | 3 cut(s) | 168, 196, 558 |
| Cac8I | GCNNGC | 2 cut(s) | 41, 85 |
| CciI | TCATGA | 1 cut(s) | 514 |
| CfoI | GCGC | 1 cut(s) | 629 |
| ClaI | ATCGAT | 1 cut(s) | 483 |
| CseI | GACGC | 1 cut(s) | 232 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CviAII | CATG | 1 cut(s) | 515 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DdeI | CTNAG | 3 cut(s) | 142, 468, 633 |
| DpnI | GATC | 1 cut(s) | 586 |
| DpnII | GATC | 1 cut(s) | 584 |
| DriI | GACNNNNNGTC | 1 cut(s) | 242 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 242 |
| EciI | GGCGGA | 1 cut(s) | 26 |
| Ecl136II | GAGCTC | 1 cut(s) | 520 |
| Eco24I | GRGCYC | 1 cut(s) | 522 |
| Eco32I | GATATC | 1 cut(s) | 13 |
| Eco53kI | GAGCTC | 1 cut(s) | 520 |
| Eco88I | CYCGRG | 1 cut(s) | 77 |
| EcoICRI | GAGCTC | 1 cut(s) | 520 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 636 |
| EcoRI | GAATTC | 1 cut(s) | 611 |
| EcoRII | CCWGG | 2 cut(s) | 63, 87 |
| EcoRV | GATATC | 1 cut(s) | 13 |
| EcoT38I | GRGCYC | 1 cut(s) | 522 |
| Esp3I | CGTCTC | 2 cut(s) | 250, 454 |
| FaeI | CATG | 1 cut(s) | 518 |
| FatI | CATG | 1 cut(s) | 514 |
| FauNDI | CATATG | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 2 cut(s) | 138, 625 |
| FokI | GGATG | 3 cut(s) | 155, 203, 545 |
| FriOI | GRGCYC | 1 cut(s) | 522 |
| Fsp4HI | GCNGC | 2 cut(s) | 138, 625 |
| FspBI | CTAG | 3 cut(s) | 8, 84, 296 |
| GlaI | GCGC | 1 cut(s) | 628 |
| GluI | GCNGC | 2 cut(s) | 138, 625 |
| GsuI | CTGGAG | 1 cut(s) | 185 |
| HaeIII | GGCC | 1 cut(s) | 53 |
| HapII | CCGG | 1 cut(s) | 608 |
| HgaI | GACGC | 1 cut(s) | 232 |
| HhaI | GCGC | 1 cut(s) | 629 |
| Hin1II | CATG | 1 cut(s) | 518 |
| Hin6I | GCGC | 1 cut(s) | 627 |
| HinP1I | GCGC | 1 cut(s) | 627 |
| HindIII | AAGCTT | 1 cut(s) | 117 |
| HinfI | GANTC | 7 cut(s) | 60, 73, 178, 194, 278, 430, 480 |
| HpaII | CCGG | 1 cut(s) | 608 |
| Hpy188I | TCNGA | 1 cut(s) | 358 |
| Hpy188III | TCNNGA | 7 cut(s) | 8, 29, 77, 344, 515, 582, 608 |
| HpyCH4III | ACNGT | 2 cut(s) | 103, 240 |
| HpyCH4IV | ACGT | 2 cut(s) | 93, 270 |
| HpyCH4V | TGCA | 2 cut(s) | 455, 494 |
| HpyF3I | CTNAG | 3 cut(s) | 142, 468, 633 |
| HpySE526I | ACGT | 2 cut(s) | 93, 270 |
| Hsp92II | CATG | 1 cut(s) | 518 |
| HspAI | GCGC | 1 cut(s) | 627 |
| Kpn2I | TCCGGA | 1 cut(s) | 607 |
| Kzo9I | GATC | 1 cut(s) | 584 |
| LmnI | GCTCC | 2 cut(s) | 204, 527 |
| Lsp1109I | GCAGC | 1 cut(s) | 149 |
| LweI | GCATC | 1 cut(s) | 52 |
| MaeI | CTAG | 3 cut(s) | 8, 84, 296 |
| MaeII | ACGT | 2 cut(s) | 93, 270 |
| MaeIII | GTNAC | 2 cut(s) | 275, 487 |
| MalI | GATC | 1 cut(s) | 586 |
| MboI | GATC | 1 cut(s) | 584 |
| MboII | GAAGA | 5 cut(s) | 233, 246, 266, 439, 580 |
| MflI | RGATCY | 1 cut(s) | 584 |
| MhlI | GDGCHC | 2 cut(s) | 522, 645 |
| MluCI | AATT | 5 cut(s) | 339, 386, 577, 611, 616 |
| MlyI | GAGTC | 3 cut(s) | 172, 272, 424 |
| MnlI | CCTC | 2 cut(s) | 73, 632 |
| MroI | TCCGGA | 1 cut(s) | 607 |
| MroXI | GAANNNNTTC | 1 cut(s) | 363 |
| MseI | TTAA | 2 cut(s) | 372, 380 |
| MslI | CAYNNNNRTG | 3 cut(s) | 173, 189, 563 |
| MspI | CCGG | 1 cut(s) | 608 |
| MspR9I | CCNGG | 2 cut(s) | 65, 89 |
| MvaI | CCWGG | 2 cut(s) | 65, 89 |
| MvnI | CGCG | 1 cut(s) | 627 |
| NdeI | CATATG | 1 cut(s) | 186 |
| NdeII | GATC | 1 cut(s) | 584 |
| NheI | GCTAGC | 1 cut(s) | 83 |
| NlaIII | CATG | 1 cut(s) | 518 |
| NlaIV | GGNNCC | 1 cut(s) | 644 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| PaeR7I | CTCGAG | 1 cut(s) | 77 |
| PagI | TCATGA | 1 cut(s) | 514 |
| PdmI | GAANNNNTTC | 1 cut(s) | 363 |
| PfeI | GAWTC | 4 cut(s) | 60, 73, 194, 480 |
| PfoI | TCCNGGA | 1 cut(s) | 63 |
| PkrI | GCNGC | 2 cut(s) | 139, 626 |
| PleI | GAGTC | 3 cut(s) | 172, 272, 424 |
| PpsI | GAGTC | 3 cut(s) | 172, 272, 424 |
| Psp124BI | GAGCTC | 1 cut(s) | 522 |
| Psp6I | CCWGG | 2 cut(s) | 63, 87 |
| PspGI | CCWGG | 2 cut(s) | 63, 87 |
| PspN4I | GGNNCC | 1 cut(s) | 644 |
| PstI | CTGCAG | 1 cut(s) | 496 |
| PsuI | RGATCY | 1 cut(s) | 584 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| RseI | CAYNNNNRTG | 3 cut(s) | 173, 189, 563 |
| SacI | GAGCTC | 1 cut(s) | 522 |
| SaqAI | TTAA | 2 cut(s) | 372, 380 |
| SatI | GCNGC | 2 cut(s) | 138, 625 |
| Sau3AI | GATC | 1 cut(s) | 584 |
| SchI | GAGTC | 3 cut(s) | 172, 272, 424 |
| ScrFI | CCNGG | 2 cut(s) | 65, 89 |
| SduI | GDGCHC | 2 cut(s) | 522, 645 |
| SetI | ASST | 9 cut(s) | 22, 96, 121, 273, 297, 317, 512, 522, 532 |
| SfaNI | GCATC | 1 cut(s) | 52 |
| SfcI | CTRYAG | 1 cut(s) | 492 |
| Sfr274I | CTCGAG | 1 cut(s) | 77 |
| SlaI | CTCGAG | 1 cut(s) | 77 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 173, 189, 563 |
| SmlI | CTYRAG | 3 cut(s) | 47, 77, 114 |
| SmoI | CTYRAG | 3 cut(s) | 47, 77, 114 |
| Sse9I | AATT | 5 cut(s) | 339, 386, 577, 611, 616 |
| SsiI | CCGC | 3 cut(s) | 37, 319, 625 |
| SspMI | CTAG | 3 cut(s) | 8, 84, 296 |
| SstI | GAGCTC | 1 cut(s) | 522 |
| StyD4I | CCNGG | 2 cut(s) | 63, 87 |
| TaaI | ACNGT | 2 cut(s) | 103, 240 |
| TaiI | ACGT | 2 cut(s) | 96, 273 |
| TaqI | TCGA | 5 cut(s) | 78, 252, 478, 483, 581 |
| TasI | AATT | 5 cut(s) | 339, 386, 577, 611, 616 |
| TauI | GCSGC | 1 cut(s) | 627 |
| TfiI | GAWTC | 4 cut(s) | 60, 73, 194, 480 |
| Tru1I | TTAA | 2 cut(s) | 372, 380 |
| Tru9I | TTAA | 2 cut(s) | 372, 380 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| TseI | GCWGC | 1 cut(s) | 137 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 5 cut(s) | 230, 234, 398, 503, 548 |
| TspGWI | ACGGA | 3 cut(s) | 263, 514, 577 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 636 |
| XapI | RAATTY | 2 cut(s) | 386, 611 |
| XbaI | TCTAGA | 1 cut(s) | 7 |
| XhoI | CTCGAG | 1 cut(s) | 77 |
| XmnI | GAANNNNTTC | 1 cut(s) | 363 |
| XspI | CTAG | 3 cut(s) | 8, 84, 296 |