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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 474 |
| AccB1I | GGYRCC | 2 cut(s) | 429, 586 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcoI | YGGCCR | 1 cut(s) | 573 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 2 cut(s) | 430, 587 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AjnI | CCWGG | 1 cut(s) | 17 |
| AluBI | AGCT | 2 cut(s) | 307, 317 |
| AluI | AGCT | 2 cut(s) | 307, 317 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 1 cut(s) | 366 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AoxI | GGCC | 1 cut(s) | 573 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 2 cut(s) | 432, 589 |
| AspS9I | GGNCC | 1 cut(s) | 476 |
| AsuC2I | CCSGG | 1 cut(s) | 233 |
| AvaII | GGWCC | 1 cut(s) | 476 |
| BalI | TGGCCA | 1 cut(s) | 575 |
| BanI | GGYRCC | 2 cut(s) | 429, 586 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| BccI | CCATC | 2 cut(s) | 87, 241 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciT130I | CCWGG | 1 cut(s) | 19 |
| BcnI | CCSGG | 1 cut(s) | 233 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 2 cut(s) | 433, 590 |
| Bme1390I | CCNGG | 2 cut(s) | 19, 233 |
| Bme18I | GGWCC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 1 cut(s) | 476 |
| BmiI | GGNNCC | 3 cut(s) | 431, 530, 588 |
| BmrFI | CCNGG | 2 cut(s) | 19, 233 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| BpuMI | CCSGG | 1 cut(s) | 233 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 2 cut(s) | 430, 587 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 2 cut(s) | 17, 375 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| Bse3DI | GCAATG | 1 cut(s) | 61 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseBI | CCWGG | 1 cut(s) | 19 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 2 cut(s) | 17, 375 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseMI | GCAATG | 1 cut(s) | 61 |
| BseRI | GAGGAG | 1 cut(s) | 572 |
| BshFI | GGCC | 1 cut(s) | 575 |
| BshNI | GGYRCC | 2 cut(s) | 429, 586 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiSI | CCGG | 2 cut(s) | 233, 395 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsnI | GGCC | 1 cut(s) | 575 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 3 cut(s) | 189, 288, 371 |
| Bsp19I | CCATGG | 1 cut(s) | 375 |
| BspANI | GGCC | 1 cut(s) | 575 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 3 cut(s) | 431, 530, 588 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspT107I | GGYRCC | 2 cut(s) | 429, 586 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrDI | GCAATG | 1 cut(s) | 61 |
| BssECI | CCNNGG | 2 cut(s) | 17, 375 |
| BssMI | GATC | 3 cut(s) | 189, 288, 371 |
| BssNI | GRCGYC | 2 cut(s) | 430, 587 |
| BssT1I | CCWWGG | 1 cut(s) | 375 |
| Bst2UI | CCWGG | 1 cut(s) | 19 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstACI | GRCGYC | 2 cut(s) | 430, 587 |
| BstDEI | CTNAG | 4 cut(s) | 255, 420, 452, 599 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstH2I | RGCGCY | 2 cut(s) | 433, 590 |
| BstHHI | GCGC | 2 cut(s) | 432, 589 |
| BstKTI | GATC | 3 cut(s) | 192, 291, 374 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 3 cut(s) | 189, 288, 371 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 436 |
| BstNI | CCWGG | 1 cut(s) | 19 |
| BstSCI | CCNGG | 2 cut(s) | 17, 231 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 583 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuRI | GGCC | 1 cut(s) | 575 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| BtsIMutI | CAGTG | 1 cut(s) | 327 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 2 cut(s) | 432, 589 |
| Cfr13I | GGNCC | 1 cut(s) | 476 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CviAII | CATG | 4 cut(s) | 302, 338, 376, 577 |
| CviJI | RGCY | 6 cut(s) | 25, 102, 307, 317, 575, 605 |
| CviKI_1 | RGCY | 6 cut(s) | 25, 102, 307, 317, 575, 605 |
| DdeI | CTNAG | 4 cut(s) | 255, 420, 452, 599 |
| DinI | GGCGCC | 2 cut(s) | 431, 588 |
| DpnI | GATC | 3 cut(s) | 191, 290, 373 |
| DpnII | GATC | 3 cut(s) | 189, 288, 371 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 474 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 474 |
| EaeI | YGGCCR | 1 cut(s) | 573 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Eco130I | CCWWGG | 1 cut(s) | 375 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 476 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 17 |
| EcoT14I | CCWWGG | 1 cut(s) | 375 |
| EgeI | GGCGCC | 2 cut(s) | 431, 588 |
| EheI | GGCGCC | 2 cut(s) | 431, 588 |
| ErhI | CCWWGG | 1 cut(s) | 375 |
| FaeI | CATG | 4 cut(s) | 305, 341, 379, 580 |
| FatI | CATG | 4 cut(s) | 301, 337, 375, 576 |
| FokI | GGATG | 1 cut(s) | 332 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 2 cut(s) | 431, 588 |
| HaeII | RGCGCY | 2 cut(s) | 433, 590 |
| HaeIII | GGCC | 1 cut(s) | 575 |
| HapII | CCGG | 2 cut(s) | 233, 395 |
| HhaI | GCGC | 2 cut(s) | 432, 589 |
| Hin1I | GRCGYC | 2 cut(s) | 430, 587 |
| Hin1II | CATG | 4 cut(s) | 305, 341, 379, 580 |
| Hin6I | GCGC | 2 cut(s) | 430, 587 |
| HinP1I | GCGC | 2 cut(s) | 430, 587 |
| HinfI | GANTC | 2 cut(s) | 65, 398 |
| HpaII | CCGG | 2 cut(s) | 233, 395 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 6 cut(s) | 77, 131, 302, 369, 395, 465 |
| HpyAV | CCTTC | 1 cut(s) | 238 |
| HpyCH4IV | ACGT | 1 cut(s) | 469 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 436 |
| HpyF3I | CTNAG | 4 cut(s) | 255, 420, 452, 599 |
| HpySE526I | ACGT | 1 cut(s) | 469 |
| Hsp92I | GRCGYC | 2 cut(s) | 430, 587 |
| Hsp92II | CATG | 4 cut(s) | 305, 341, 379, 580 |
| HspAI | GCGC | 2 cut(s) | 430, 587 |
| KasI | GGCGCC | 2 cut(s) | 429, 586 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Kzo9I | GATC | 3 cut(s) | 189, 288, 371 |
| LmnI | GCTCC | 2 cut(s) | 314, 494 |
| LpnPI | CCDG | 8 cut(s) | 4, 31, 90, 246, 267, 408, 450, 557 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 1 cut(s) | 469 |
| MaeIII | GTNAC | 3 cut(s) | 62, 274, 325 |
| MalI | GATC | 3 cut(s) | 191, 290, 373 |
| MboI | GATC | 3 cut(s) | 189, 288, 371 |
| MboII | GAAGA | 5 cut(s) | 20, 23, 367, 512, 546 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MlsI | TGGCCA | 1 cut(s) | 575 |
| MluCI | AATT | 3 cut(s) | 173, 364, 403 |
| MluNI | TGGCCA | 1 cut(s) | 575 |
| Mly113I | GGCGCC | 2 cut(s) | 430, 587 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MnlI | CCTC | 8 cut(s) | 15, 113, 419, 427, 530, 550, 553, 579 |
| Mox20I | TGGCCA | 1 cut(s) | 575 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 575 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 2 cut(s) | 350, 581 |
| Msp20I | TGGCCA | 1 cut(s) | 575 |
| MspI | CCGG | 2 cut(s) | 233, 395 |
| MspR9I | CCNGG | 2 cut(s) | 19, 233 |
| MvaI | CCWGG | 1 cut(s) | 19 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 436 |
| NarI | GGCGCC | 2 cut(s) | 430, 587 |
| NciI | CCSGG | 1 cut(s) | 233 |
| NcoI | CCATGG | 1 cut(s) | 375 |
| NdeII | GATC | 3 cut(s) | 189, 288, 371 |
| NlaIII | CATG | 4 cut(s) | 305, 341, 379, 580 |
| NlaIV | GGNNCC | 3 cut(s) | 431, 530, 588 |
| NmuCI | GTSAC | 2 cut(s) | 62, 325 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 398 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PluTI | GGCGCC | 2 cut(s) | 433, 590 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| Psp6I | CCWGG | 1 cut(s) | 17 |
| PspGI | CCWGG | 1 cut(s) | 17 |
| PspN4I | GGNNCC | 3 cut(s) | 431, 530, 588 |
| PspPI | GGNCC | 1 cut(s) | 476 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 2 cut(s) | 350, 581 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 3 cut(s) | 189, 288, 371 |
| Sau96I | GGNCC | 1 cut(s) | 476 |
| SchI | GAGTC | 1 cut(s) | 59 |
| ScrFI | CCNGG | 2 cut(s) | 19, 233 |
| SetI | ASST | 6 cut(s) | 84, 230, 299, 309, 319, 472 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfoI | GGCGCC | 2 cut(s) | 431, 588 |
| SinI | GGWCC | 1 cut(s) | 476 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 350, 581 |
| Sse9I | AATT | 3 cut(s) | 173, 364, 403 |
| SspDI | GGCGCC | 2 cut(s) | 429, 586 |
| SspI | AATATT | 1 cut(s) | 48 |
| SspMI | CTAG | 1 cut(s) | 83 |
| StyD4I | CCNGG | 2 cut(s) | 17, 231 |
| StyI | CCWWGG | 1 cut(s) | 375 |
| TaiI | ACGT | 1 cut(s) | 472 |
| TaqI | TCGA | 2 cut(s) | 270, 368 |
| TasI | AATT | 3 cut(s) | 173, 364, 403 |
| TfiI | GAWTC | 1 cut(s) | 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TscAI | CASTG | 1 cut(s) | 334 |
| TseFI | GTSAC | 2 cut(s) | 62, 325 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 325 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 290, 335 |
| TspGWI | ACGGA | 1 cut(s) | 541 |
| TspRI | CASTG | 1 cut(s) | 334 |
| VpaK11BI | GGWCC | 1 cut(s) | 476 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 1 cut(s) | 83 |