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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 651 |
| AccB1I | GGYRCC | 1 cut(s) | 228 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 453 |
| AccIII | TCCGGA | 1 cut(s) | 193 |
| AciI | CCGC | 1 cut(s) | 574 |
| AcsI | RAATTY | 3 cut(s) | 487, 624, 637 |
| AcyI | GRCGYC | 1 cut(s) | 229 |
| AfaI | GTAC | 1 cut(s) | 81 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 453 |
| AgsI | TTSAA | 2 cut(s) | 280, 384 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 3 cut(s) | 106, 450, 542 |
| AluI | AGCT | 3 cut(s) | 106, 450, 542 |
| Alw21I | GWGCWC | 2 cut(s) | 108, 409 |
| Alw26I | GTCTC | 1 cut(s) | 40 |
| Aor13HI | TCCGGA | 1 cut(s) | 193 |
| AoxI | GGCC | 1 cut(s) | 503 |
| ApeKI | GCWGC | 1 cut(s) | 462 |
| ApoI | RAATTY | 3 cut(s) | 487, 624, 637 |
| AseI | ATTAAT | 1 cut(s) | 311 |
| AspLEI | GCGC | 2 cut(s) | 215, 231 |
| AsuII | TTCGAA | 2 cut(s) | 167, 263 |
| AxyI | CCTNAGG | 1 cut(s) | 251 |
| BanI | GGYRCC | 1 cut(s) | 228 |
| BanII | GRGCYC | 1 cut(s) | 108 |
| BbsI | GAAGAC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 2 cut(s) | 108, 409 |
| BbvI | GCAGC | 1 cut(s) | 449 |
| BccI | CCATC | 3 cut(s) | 40, 514, 543 |
| BciVI | GTATCC | 1 cut(s) | 250 |
| BcoDI | GTCTC | 1 cut(s) | 40 |
| BfaI | CTAG | 1 cut(s) | 539 |
| BfoI | RGCGCY | 2 cut(s) | 216, 232 |
| BfuI | GTATCC | 1 cut(s) | 250 |
| BisI | GCNGC | 1 cut(s) | 463 |
| BlsI | GCNGC | 1 cut(s) | 464 |
| BmiI | GGNNCC | 1 cut(s) | 230 |
| BpiI | GAAGAC | 1 cut(s) | 20 |
| Bpu14I | TTCGAA | 2 cut(s) | 167, 263 |
| BpuEI | CTTGAG | 1 cut(s) | 170 |
| Bsa29I | ATCGAT | 1 cut(s) | 69 |
| BsaHI | GRCGYC | 1 cut(s) | 229 |
| BsaJI | CCNNGG | 1 cut(s) | 174 |
| BsaWI | WCCGGW | 1 cut(s) | 193 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 288, 318 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 453 |
| Bse21I | CCTNAGG | 1 cut(s) | 251 |
| Bse3DI | GCAATG | 1 cut(s) | 560 |
| BseAI | TCCGGA | 1 cut(s) | 193 |
| BseCI | ATCGAT | 1 cut(s) | 69 |
| BseDI | CCNNGG | 1 cut(s) | 174 |
| BseGI | GGATG | 1 cut(s) | 144 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 453 |
| BseMI | GCAATG | 1 cut(s) | 560 |
| BseMII | CTCAG | 1 cut(s) | 625 |
| BseRI | GAGGAG | 1 cut(s) | 338 |
| BseXI | GCAGC | 1 cut(s) | 449 |
| BshFI | GGCC | 1 cut(s) | 505 |
| BshNI | GGYRCC | 1 cut(s) | 228 |
| BshVI | ATCGAT | 1 cut(s) | 69 |
| BsiHKAI | GWGCWC | 2 cut(s) | 108, 409 |
| BsiSI | CCGG | 1 cut(s) | 194 |
| BsiWI | CGTACG | 1 cut(s) | 79 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 453 |
| BsmAI | GTCTC | 1 cut(s) | 40 |
| BsmBI | CGTCTC | 1 cut(s) | 40 |
| BsnI | GGCC | 1 cut(s) | 505 |
| Bsp119I | TTCGAA | 2 cut(s) | 167, 263 |
| Bsp1286I | GDGCHC | 2 cut(s) | 108, 409 |
| Bsp13I | TCCGGA | 1 cut(s) | 193 |
| Bsp143I | GATC | 1 cut(s) | 87 |
| BspACI | CCGC | 1 cut(s) | 574 |
| BspANI | GGCC | 1 cut(s) | 505 |
| BspCNI | CTCAG | 1 cut(s) | 624 |
| BspDI | ATCGAT | 1 cut(s) | 69 |
| BspEI | TCCGGA | 1 cut(s) | 193 |
| BspHI | TCATGA | 1 cut(s) | 100 |
| BspLI | GGNNCC | 1 cut(s) | 230 |
| BspQI | GCTCTTC | 1 cut(s) | 549 |
| BspT104I | TTCGAA | 2 cut(s) | 167, 263 |
| BspT107I | GGYRCC | 1 cut(s) | 228 |
| BsrDI | GCAATG | 1 cut(s) | 560 |
| BssECI | CCNNGG | 1 cut(s) | 174 |
| BssMI | GATC | 1 cut(s) | 87 |
| BssNI | GRCGYC | 1 cut(s) | 229 |
| Bst4CI | ACNGT | 5 cut(s) | 79, 389, 416, 442, 602 |
| Bst6I | CTCTTC | 1 cut(s) | 549 |
| BstACI | GRCGYC | 1 cut(s) | 229 |
| BstBI | TTCGAA | 2 cut(s) | 167, 263 |
| BstC8I | GCNNGC | 2 cut(s) | 467, 532 |
| BstDEI | CTNAG | 4 cut(s) | 54, 219, 251, 611 |
| BstDSI | CCRYGG | 1 cut(s) | 174 |
| BstF5I | GGATG | 1 cut(s) | 144 |
| BstH2I | RGCGCY | 2 cut(s) | 216, 232 |
| BstHHI | GCGC | 2 cut(s) | 215, 231 |
| BstKTI | GATC | 1 cut(s) | 90 |
| BstMAI | GTCTC | 1 cut(s) | 40 |
| BstMBI | GATC | 1 cut(s) | 87 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 235 |
| BstV1I | GCAGC | 1 cut(s) | 449 |
| BstV2I | GAAGAC | 1 cut(s) | 20 |
| Bsu15I | ATCGAT | 1 cut(s) | 69 |
| Bsu36I | CCTNAGG | 1 cut(s) | 251 |
| BsuI | GTATCC | 1 cut(s) | 250 |
| BsuRI | GGCC | 1 cut(s) | 505 |
| BsuTUI | ATCGAT | 1 cut(s) | 69 |
| BtgI | CCRYGG | 1 cut(s) | 174 |
| BtsCI | GGATG | 1 cut(s) | 144 |
| BtsIMutI | CAGTG | 1 cut(s) | 619 |
| Cac8I | GCNNGC | 2 cut(s) | 467, 532 |
| CciI | TCATGA | 1 cut(s) | 100 |
| CfoI | GCGC | 2 cut(s) | 215, 231 |
| ClaI | ATCGAT | 1 cut(s) | 69 |
| Csp6I | GTAC | 1 cut(s) | 80 |
| CviAII | CATG | 4 cut(s) | 101, 137, 348, 520 |
| CviJI | RGCY | 8 cut(s) | 106, 450, 469, 505, 524, 534, 542, 609 |
| CviKI_1 | RGCY | 8 cut(s) | 106, 450, 469, 505, 524, 534, 542, 609 |
| CviQI | GTAC | 1 cut(s) | 80 |
| DdeI | CTNAG | 4 cut(s) | 54, 219, 251, 611 |
| DinI | GGCGCC | 1 cut(s) | 230 |
| DpnI | GATC | 1 cut(s) | 89 |
| DpnII | GATC | 1 cut(s) | 87 |
| Eam1104I | CTCTTC | 1 cut(s) | 549 |
| EarI | CTCTTC | 1 cut(s) | 549 |
| Ecl136II | GAGCTC | 1 cut(s) | 106 |
| Eco24I | GRGCYC | 1 cut(s) | 108 |
| Eco53kI | GAGCTC | 1 cut(s) | 106 |
| Eco81I | CCTNAGG | 1 cut(s) | 251 |
| EcoICRI | GAGCTC | 1 cut(s) | 106 |
| EcoRI | GAATTC | 2 cut(s) | 624, 637 |
| EcoT38I | GRGCYC | 1 cut(s) | 108 |
| EgeI | GGCGCC | 1 cut(s) | 230 |
| EheI | GGCGCC | 1 cut(s) | 230 |
| Esp3I | CGTCTC | 1 cut(s) | 40 |
| FaeI | CATG | 4 cut(s) | 104, 140, 351, 523 |
| FatI | CATG | 4 cut(s) | 100, 136, 347, 519 |
| Fnu4HI | GCNGC | 1 cut(s) | 463 |
| FokI | GGATG | 1 cut(s) | 131 |
| FriOI | GRGCYC | 1 cut(s) | 108 |
| Fsp4HI | GCNGC | 1 cut(s) | 463 |
| FspBI | CTAG | 1 cut(s) | 539 |
| GlaI | GCGC | 2 cut(s) | 214, 230 |
| GluI | GCNGC | 1 cut(s) | 463 |
| HaeII | RGCGCY | 2 cut(s) | 216, 232 |
| HaeIII | GGCC | 1 cut(s) | 505 |
| HapII | CCGG | 1 cut(s) | 194 |
| HhaI | GCGC | 2 cut(s) | 215, 231 |
| Hin1I | GRCGYC | 1 cut(s) | 229 |
| Hin1II | CATG | 4 cut(s) | 104, 140, 351, 523 |
| Hin6I | GCGC | 2 cut(s) | 213, 229 |
| HinP1I | GCGC | 2 cut(s) | 213, 229 |
| HincII | GTYRAC | 2 cut(s) | 517, 669 |
| HindII | GTYRAC | 2 cut(s) | 517, 669 |
| HinfI | GANTC | 3 cut(s) | 16, 197, 556 |
| HpaII | CCGG | 1 cut(s) | 194 |
| Hpy166II | GTNNAC | 2 cut(s) | 517, 669 |
| Hpy188I | TCNGA | 4 cut(s) | 308, 500, 555, 630 |
| Hpy188III | TCNNGA | 3 cut(s) | 101, 194, 272 |
| Hpy8I | GTNNAC | 2 cut(s) | 517, 669 |
| HpyAV | CCTTC | 4 cut(s) | 37, 219, 495, 592 |
| HpyCH4III | ACNGT | 5 cut(s) | 79, 389, 416, 442, 602 |
| HpyCH4V | TGCA | 3 cut(s) | 365, 437, 530 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 235 |
| HpyF3I | CTNAG | 4 cut(s) | 54, 219, 251, 611 |
| Hsp92I | GRCGYC | 1 cut(s) | 229 |
| Hsp92II | CATG | 4 cut(s) | 104, 140, 351, 523 |
| HspAI | GCGC | 2 cut(s) | 213, 229 |
| KasI | GGCGCC | 1 cut(s) | 228 |
| Kpn2I | TCCGGA | 1 cut(s) | 193 |
| Kzo9I | GATC | 1 cut(s) | 87 |
| LguI | GCTCTTC | 1 cut(s) | 549 |
| LmnI | GCTCC | 1 cut(s) | 576 |
| LpnPI | CCDG | 5 cut(s) | 207, 257, 379, 460, 479 |
| Lsp1109I | GCAGC | 1 cut(s) | 449 |
| MaeI | CTAG | 1 cut(s) | 539 |
| MaeIII | GTNAC | 2 cut(s) | 73, 442 |
| MalI | GATC | 1 cut(s) | 89 |
| MboI | GATC | 1 cut(s) | 87 |
| MboII | GAAGA | 3 cut(s) | 25, 494, 536 |
| MhlI | GDGCHC | 2 cut(s) | 108, 409 |
| MluCI | AATT | 8 cut(s) | 163, 202, 312, 374, 487, 624, 637, 652 |
| Mly113I | GGCGCC | 1 cut(s) | 229 |
| MlyI | GAGTC | 2 cut(s) | 10, 206 |
| MnlI | CCTC | 7 cut(s) | 314, 316, 347, 503, 558, 620, 653 |
| MroI | TCCGGA | 1 cut(s) | 193 |
| MseI | TTAA | 2 cut(s) | 311, 605 |
| MspI | CCGG | 1 cut(s) | 194 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 235 |
| NarI | GGCGCC | 1 cut(s) | 229 |
| NdeII | GATC | 1 cut(s) | 87 |
| NlaIII | CATG | 4 cut(s) | 104, 140, 351, 523 |
| NlaIV | GGNNCC | 1 cut(s) | 230 |
| NmeAIII | GCCGAG | 1 cut(s) | 257 |
| NspV | TTCGAA | 2 cut(s) | 167, 263 |
| PagI | TCATGA | 1 cut(s) | 100 |
| PciSI | GCTCTTC | 1 cut(s) | 549 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 75 |
| PfeI | GAWTC | 1 cut(s) | 556 |
| Pfl23II | CGTACG | 1 cut(s) | 79 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 453 |
| PkrI | GCNGC | 1 cut(s) | 464 |
| PleI | GAGTC | 2 cut(s) | 10, 205 |
| PluTI | GGCGCC | 1 cut(s) | 232 |
| PpsI | GAGTC | 2 cut(s) | 10, 205 |
| PshBI | ATTAAT | 1 cut(s) | 311 |
| PsiI | TTATAA | 1 cut(s) | 651 |
| Psp124BI | GAGCTC | 1 cut(s) | 108 |
| PspLI | CGTACG | 1 cut(s) | 79 |
| PspN4I | GGNNCC | 1 cut(s) | 230 |
| RsaI | GTAC | 1 cut(s) | 81 |
| RsaNI | GTAC | 1 cut(s) | 80 |
| SacI | GAGCTC | 1 cut(s) | 108 |
| SapI | GCTCTTC | 1 cut(s) | 549 |
| SaqAI | TTAA | 2 cut(s) | 311, 605 |
| SatI | GCNGC | 1 cut(s) | 463 |
| Sau3AI | GATC | 1 cut(s) | 87 |
| SchI | GAGTC | 2 cut(s) | 10, 206 |
| SduI | GDGCHC | 2 cut(s) | 108, 409 |
| SetI | ASST | 8 cut(s) | 29, 98, 108, 252, 334, 358, 452, 544 |
| SfoI | GGCGCC | 1 cut(s) | 230 |
| SfuI | TTCGAA | 2 cut(s) | 167, 263 |
| SmlI | CTYRAG | 1 cut(s) | 149 |
| SmoI | CTYRAG | 1 cut(s) | 149 |
| Sse9I | AATT | 8 cut(s) | 163, 202, 312, 374, 487, 624, 637, 652 |
| SsiI | CCGC | 1 cut(s) | 574 |
| SspDI | GGCGCC | 1 cut(s) | 228 |
| SspMI | CTAG | 1 cut(s) | 539 |
| SstI | GAGCTC | 1 cut(s) | 108 |
| TaaI | ACNGT | 5 cut(s) | 79, 389, 416, 442, 602 |
| TaqI | TCGA | 5 cut(s) | 69, 167, 263, 635, 645 |
| TasI | AATT | 8 cut(s) | 163, 202, 312, 374, 487, 624, 637, 652 |
| TfiI | GAWTC | 1 cut(s) | 556 |
| Tru1I | TTAA | 2 cut(s) | 311, 605 |
| Tru9I | TTAA | 2 cut(s) | 311, 605 |
| TscAI | CASTG | 1 cut(s) | 619 |
| TseI | GCWGC | 1 cut(s) | 462 |
| TspDTI | ATGAA | 3 cut(s) | 89, 134, 574 |
| TspGWI | ACGGA | 2 cut(s) | 163, 608 |
| TspRI | CASTG | 1 cut(s) | 619 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 453 |
| VspI | ATTAAT | 1 cut(s) | 311 |
| XapI | RAATTY | 3 cut(s) | 487, 624, 637 |
| XspI | CTAG | 1 cut(s) | 539 |