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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1275 |
| AccB1I | GGYRCC | 2 cut(s) | 593, 674 |
| AccI | GTMKAC | 2 cut(s) | 13, 920 |
| AciI | CCGC | 4 cut(s) | 268, 457, 889, 1171 |
| AclWI | GGATC | 5 cut(s) | 374, 563, 1207, 1352, 1422 |
| AcyI | GRCGYC | 3 cut(s) | 657, 675, 1272 |
| AfaI | GTAC | 3 cut(s) | 155, 948, 1058 |
| AfeI | AGCGCT | 1 cut(s) | 718 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 619, 623, 1283 |
| AflIII | ACRYGT | 1 cut(s) | 870 |
| AgsI | TTSAA | 4 cut(s) | 410, 710, 1186, 1388 |
| AjiI | CACGTC | 1 cut(s) | 43 |
| AjnI | CCWGG | 2 cut(s) | 36, 939 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 195, 227, 1098, 1130 |
| Alw26I | GTCTC | 6 cut(s) | 199, 319, 508, 604, 1102, 1208 |
| AlwI | GGATC | 5 cut(s) | 374, 563, 1207, 1352, 1422 |
| Ama87I | CYCGRG | 2 cut(s) | 26, 929 |
| Aor51HI | AGCGCT | 1 cut(s) | 718 |
| AoxI | GGCC | 1 cut(s) | 903 |
| ApeKI | GCWGC | 2 cut(s) | 989, 1247 |
| AspA2I | CCTAGG | 1 cut(s) | 617 |
| AspLEI | GCGC | 2 cut(s) | 677, 719 |
| AsuHPI | GGTGA | 2 cut(s) | 680, 695 |
| AvaI | CYCGRG | 2 cut(s) | 26, 929 |
| AvrII | CCTAGG | 1 cut(s) | 617 |
| BanI | GGYRCC | 2 cut(s) | 593, 674 |
| BbsI | GAAGAC | 2 cut(s) | 299, 488 |
| BbvI | GCAGC | 2 cut(s) | 1001, 1234 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 338, 372, 527, 561, 1316, 1350 |
| BciT130I | CCWGG | 2 cut(s) | 38, 941 |
| BcoDI | GTCTC | 6 cut(s) | 199, 319, 508, 604, 1102, 1208 |
| BfaI | CTAG | 7 cut(s) | 33, 245, 434, 618, 765, 936, 1148 |
| BfoI | RGCGCY | 2 cut(s) | 678, 720 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 95, 998 |
| BisI | GCNGC | 2 cut(s) | 990, 1248 |
| BlnI | CCTAGG | 1 cut(s) | 617 |
| BlsI | GCNGC | 2 cut(s) | 991, 1249 |
| Bme1390I | CCNGG | 2 cut(s) | 38, 941 |
| BmeT110I | CYCGRG | 2 cut(s) | 26, 929 |
| BmgBI | CACGTC | 1 cut(s) | 43 |
| BmiI | GGNNCC | 2 cut(s) | 595, 676 |
| BmrFI | CCNGG | 2 cut(s) | 38, 941 |
| BmsI | GCATC | 2 cut(s) | 676, 904 |
| BpiI | GAAGAC | 2 cut(s) | 299, 488 |
| BpmI | CTGGAG | 2 cut(s) | 134, 1037 |
| Bpu10I | CCTNAGC | 1 cut(s) | 240 |
| BpuEI | CTTGAG | 2 cut(s) | 884, 1163 |
| Bsa29I | ATCGAT | 3 cut(s) | 348, 537, 1326 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1185 |
| BsaHI | GRCGYC | 3 cut(s) | 657, 675, 1272 |
| BsaI | GGTCTC | 2 cut(s) | 199, 1102 |
| BsaJI | CCNNGG | 4 cut(s) | 617, 648, 679, 1431 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 619, 623, 1283 |
| Bse1I | ACTGG | 3 cut(s) | 151, 859, 1054 |
| Bse3DI | GCAATG | 1 cut(s) | 285 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1185 |
| BseBI | CCWGG | 2 cut(s) | 38, 941 |
| BseCI | ATCGAT | 3 cut(s) | 348, 537, 1326 |
| BseDI | CCNNGG | 4 cut(s) | 617, 648, 679, 1431 |
| BseGI | GGATG | 8 cut(s) | 117, 145, 423, 658, 733, 1020, 1048, 1292 |
| BseJI | GATNNNNATC | 1 cut(s) | 1185 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 619, 623, 1283 |
| BseMI | GCAATG | 1 cut(s) | 285 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseNI | ACTGG | 3 cut(s) | 151, 859, 1054 |
| BseXI | GCAGC | 2 cut(s) | 1001, 1234 |
| BshFI | GGCC | 1 cut(s) | 905 |
| BshNI | GGYRCC | 2 cut(s) | 593, 674 |
| BshVI | ATCGAT | 3 cut(s) | 348, 537, 1326 |
| BsiHKCI | CYCGRG | 2 cut(s) | 26, 929 |
| BslFI | GGGAC | 4 cut(s) | 617, 820, 1177, 1259 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 619, 623, 1283 |
| BsmAI | GTCTC | 6 cut(s) | 199, 319, 508, 604, 1102, 1208 |
| BsmBI | CGTCTC | 3 cut(s) | 319, 508, 604 |
| BsmFI | GGGAC | 4 cut(s) | 617, 820, 1177, 1259 |
| BsnI | GGCC | 1 cut(s) | 905 |
| Bso31I | GGTCTC | 2 cut(s) | 199, 1102 |
| BsoBI | CYCGRG | 2 cut(s) | 26, 929 |
| Bsp143I | GATC | 5 cut(s) | 366, 555, 1212, 1344, 1427 |
| Bsp19I | CCATGG | 1 cut(s) | 648 |
| BspACI | CCGC | 4 cut(s) | 268, 457, 889, 1171 |
| BspANI | GGCC | 1 cut(s) | 905 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspDI | ATCGAT | 3 cut(s) | 348, 537, 1326 |
| BspHI | TCATGA | 3 cut(s) | 379, 568, 1357 |
| BspLI | GGNNCC | 2 cut(s) | 595, 676 |
| BspPI | GGATC | 5 cut(s) | 374, 563, 1207, 1352, 1422 |
| BspT107I | GGYRCC | 2 cut(s) | 593, 674 |
| BspTNI | GGTCTC | 2 cut(s) | 199, 1102 |
| BsrDI | GCAATG | 1 cut(s) | 285 |
| BsrI | ACTGG | 3 cut(s) | 151, 859, 1054 |
| BssECI | CCNNGG | 4 cut(s) | 617, 648, 679, 1431 |
| BssMI | GATC | 5 cut(s) | 366, 555, 1212, 1344, 1427 |
| BssNAI | GTATAC | 2 cut(s) | 14, 921 |
| BssNI | GRCGYC | 3 cut(s) | 657, 675, 1272 |
| BssT1I | CCWWGG | 3 cut(s) | 617, 648, 679 |
| Bst1107I | GTATAC | 2 cut(s) | 14, 921 |
| Bst2UI | CCWGG | 2 cut(s) | 38, 941 |
| Bst4CI | ACNGT | 4 cut(s) | 52, 598, 761, 955 |
| BstACI | GRCGYC | 3 cut(s) | 657, 675, 1272 |
| BstC8I | GCNNGC | 5 cut(s) | 60, 625, 893, 963, 1260 |
| BstDEI | CTNAG | 6 cut(s) | 91, 240, 333, 522, 994, 1311 |
| BstDSI | CCRYGG | 2 cut(s) | 648, 1431 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1281 |
| BstF5I | GGATG | 8 cut(s) | 117, 145, 423, 658, 733, 1020, 1048, 1292 |
| BstH2I | RGCGCY | 2 cut(s) | 678, 720 |
| BstHHI | GCGC | 2 cut(s) | 677, 719 |
| BstKTI | GATC | 5 cut(s) | 369, 558, 1215, 1347, 1430 |
| BstMAI | GTCTC | 6 cut(s) | 199, 319, 508, 604, 1102, 1208 |
| BstMBI | GATC | 5 cut(s) | 366, 555, 1212, 1344, 1427 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 95, 104, 241, 986, 998, 1007, 1144 |
| BstNI | CCWGG | 2 cut(s) | 38, 941 |
| BstNSI | RCATGY | 2 cut(s) | 874, 1258 |
| BstSCI | CCNGG | 2 cut(s) | 36, 939 |
| BstV1I | GCAGC | 2 cut(s) | 1001, 1234 |
| BstV2I | GAAGAC | 2 cut(s) | 299, 488 |
| BstX2I | RGATCY | 1 cut(s) | 1427 |
| BstYI | RGATCY | 1 cut(s) | 1427 |
| BstZ17I | GTATAC | 2 cut(s) | 14, 921 |
| Bsu15I | ATCGAT | 3 cut(s) | 348, 537, 1326 |
| BsuRI | GGCC | 1 cut(s) | 905 |
| BsuTUI | ATCGAT | 3 cut(s) | 348, 537, 1326 |
| BtgI | CCRYGG | 2 cut(s) | 648, 1431 |
| BtgZI | GCGATG | 1 cut(s) | 482 |
| BtrI | CACGTC | 1 cut(s) | 43 |
| BtsCI | GGATG | 8 cut(s) | 117, 145, 423, 658, 733, 1020, 1048, 1292 |
| Cac8I | GCNNGC | 5 cut(s) | 60, 625, 893, 963, 1260 |
| CciI | TCATGA | 3 cut(s) | 379, 568, 1357 |
| CfoI | GCGC | 2 cut(s) | 677, 719 |
| ClaI | ATCGAT | 3 cut(s) | 348, 537, 1326 |
| CseI | GACGC | 1 cut(s) | 646 |
| Csp6I | GTAC | 3 cut(s) | 154, 947, 1057 |
| CviQI | GTAC | 3 cut(s) | 154, 947, 1057 |
| DdeI | CTNAG | 6 cut(s) | 91, 240, 333, 522, 994, 1311 |
| DinI | GGCGCC | 1 cut(s) | 676 |
| DpnI | GATC | 5 cut(s) | 368, 557, 1214, 1346, 1429 |
| DpnII | GATC | 5 cut(s) | 366, 555, 1212, 1344, 1427 |
| EciI | GGCGGA | 1 cut(s) | 878 |
| Eco130I | CCWWGG | 3 cut(s) | 617, 648, 679 |
| Eco31I | GGTCTC | 2 cut(s) | 199, 1102 |
| Eco32I | GATATC | 1 cut(s) | 886 |
| Eco47III | AGCGCT | 1 cut(s) | 718 |
| Eco88I | CYCGRG | 2 cut(s) | 26, 929 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1281 |
| EcoRII | CCWGG | 2 cut(s) | 36, 939 |
| EcoRV | GATATC | 1 cut(s) | 886 |
| EcoT14I | CCWWGG | 3 cut(s) | 617, 648, 679 |
| EgeI | GGCGCC | 1 cut(s) | 676 |
| EheI | GGCGCC | 1 cut(s) | 676 |
| ErhI | CCWWGG | 3 cut(s) | 617, 648, 679 |
| Esp3I | CGTCTC | 3 cut(s) | 319, 508, 604 |
| FaqI | GGGAC | 4 cut(s) | 617, 820, 1177, 1259 |
| FauNDI | CATATG | 2 cut(s) | 135, 1038 |
| FblI | GTMKAC | 2 cut(s) | 13, 920 |
| Fnu4HI | GCNGC | 2 cut(s) | 990, 1248 |
| FokI | GGATG | 8 cut(s) | 104, 152, 410, 665, 720, 1007, 1055, 1299 |
| Fsp4HI | GCNGC | 2 cut(s) | 990, 1248 |
| FspBI | CTAG | 7 cut(s) | 33, 245, 434, 618, 765, 936, 1148 |
| GlaI | GCGC | 2 cut(s) | 676, 718 |
| GluI | GCNGC | 2 cut(s) | 990, 1248 |
| GsuI | CTGGAG | 2 cut(s) | 134, 1037 |
| HaeII | RGCGCY | 2 cut(s) | 678, 720 |
| HaeIII | GGCC | 1 cut(s) | 905 |
| HgaI | GACGC | 1 cut(s) | 646 |
| HhaI | GCGC | 2 cut(s) | 677, 719 |
| Hin1I | GRCGYC | 3 cut(s) | 657, 675, 1272 |
| Hin6I | GCGC | 2 cut(s) | 675, 717 |
| HinP1I | GCGC | 2 cut(s) | 675, 717 |
| HphI | GGTGA | 2 cut(s) | 680, 695 |
| Hpy166II | GTNNAC | 4 cut(s) | 14, 607, 774, 921 |
| Hpy188I | TCNGA | 1 cut(s) | 862 |
| Hpy188III | TCNNGA | 8 cut(s) | 26, 239, 380, 569, 881, 929, 1142, 1358 |
| Hpy8I | GTNNAC | 4 cut(s) | 14, 607, 774, 921 |
| HpyAV | CCTTC | 3 cut(s) | 177, 1080, 1261 |
| HpyCH4III | ACNGT | 4 cut(s) | 52, 598, 761, 955 |
| HpyCH4IV | ACGT | 6 cut(s) | 42, 219, 945, 1122, 1208, 1272 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 95, 104, 241, 986, 998, 1007, 1144 |
| HpyF3I | CTNAG | 6 cut(s) | 91, 240, 333, 522, 994, 1311 |
| HpySE526I | ACGT | 6 cut(s) | 42, 219, 945, 1122, 1208, 1272 |
| Hsp92I | GRCGYC | 3 cut(s) | 657, 675, 1272 |
| HspAI | GCGC | 2 cut(s) | 675, 717 |
| KasI | GGCGCC | 1 cut(s) | 674 |
| Kzo9I | GATC | 5 cut(s) | 366, 555, 1212, 1344, 1427 |
| LmnI | GCTCC | 6 cut(s) | 153, 392, 581, 844, 1056, 1370 |
| Lsp1109I | GCAGC | 2 cut(s) | 1001, 1234 |
| LweI | GCATC | 2 cut(s) | 676, 904 |
| MaeI | CTAG | 7 cut(s) | 33, 245, 434, 618, 765, 936, 1148 |
| MaeII | ACGT | 6 cut(s) | 42, 219, 945, 1122, 1208, 1272 |
| MaeIII | GTNAC | 6 cut(s) | 224, 352, 541, 1127, 1225, 1330 |
| MalI | GATC | 5 cut(s) | 368, 557, 1214, 1346, 1429 |
| MboI | GATC | 5 cut(s) | 366, 555, 1212, 1344, 1427 |
| MboII | GAAGA | 7 cut(s) | 182, 215, 304, 493, 1085, 1118, 1423 |
| MfeI | CAATTG | 1 cut(s) | 747 |
| MflI | RGATCY | 1 cut(s) | 1427 |
| MluCI | AATT | 2 cut(s) | 747, 1420 |
| Mly113I | GGCGCC | 1 cut(s) | 675 |
| MlyI | GAGTC | 5 cut(s) | 121, 289, 478, 638, 1024 |
| MmeI | TCCRAC | 1 cut(s) | 796 |
| MnlI | CCTC | 6 cut(s) | 88, 275, 464, 991, 1178, 1277 |
| MseI | TTAA | 2 cut(s) | 1221, 1424 |
| MspR9I | CCNGG | 2 cut(s) | 38, 941 |
| MunI | CAATTG | 1 cut(s) | 747 |
| MvaI | CCWGG | 2 cut(s) | 38, 941 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 95, 104, 241, 986, 998, 1007, 1144 |
| NarI | GGCGCC | 1 cut(s) | 675 |
| NcoI | CCATGG | 1 cut(s) | 648 |
| NdeI | CATATG | 2 cut(s) | 135, 1038 |
| NdeII | GATC | 5 cut(s) | 366, 555, 1212, 1344, 1427 |
| NlaIV | GGNNCC | 2 cut(s) | 595, 676 |
| NmuCI | GTSAC | 1 cut(s) | 1225 |
| NspI | RCATGY | 2 cut(s) | 874, 1258 |
| PaeR7I | CTCGAG | 2 cut(s) | 26, 929 |
| PagI | TCATGA | 3 cut(s) | 379, 568, 1357 |
| PciI | ACATGT | 1 cut(s) | 870 |
| PfeI | GAWTC | 9 cut(s) | 5, 143, 345, 534, 730, 912, 925, 1046, 1323 |
| PkrI | GCNGC | 2 cut(s) | 991, 1249 |
| PleI | GAGTC | 5 cut(s) | 121, 289, 478, 638, 1024 |
| PluTI | GGCGCC | 1 cut(s) | 678 |
| PpsI | GAGTC | 5 cut(s) | 121, 289, 478, 638, 1024 |
| PscI | ACATGT | 1 cut(s) | 870 |
| Psp6I | CCWGG | 2 cut(s) | 36, 939 |
| PspGI | CCWGG | 2 cut(s) | 36, 939 |
| PspN4I | GGNNCC | 2 cut(s) | 595, 676 |
| PsuI | RGATCY | 1 cut(s) | 1427 |
| RsaI | GTAC | 3 cut(s) | 155, 948, 1058 |
| RsaNI | GTAC | 3 cut(s) | 154, 947, 1057 |
| SaqAI | TTAA | 2 cut(s) | 1221, 1424 |
| SatI | GCNGC | 2 cut(s) | 990, 1248 |
| Sau3AI | GATC | 5 cut(s) | 366, 555, 1212, 1344, 1427 |
| SchI | GAGTC | 5 cut(s) | 121, 289, 478, 638, 1024 |
| ScrFI | CCNGG | 2 cut(s) | 38, 941 |
| SfaNI | GCATC | 2 cut(s) | 676, 904 |
| SfoI | GGCGCC | 1 cut(s) | 676 |
| Sfr274I | CTCGAG | 2 cut(s) | 26, 929 |
| SlaI | CTCGAG | 2 cut(s) | 26, 929 |
| SmlI | CTYRAG | 4 cut(s) | 26, 899, 929, 1142 |
| SmoI | CTYRAG | 4 cut(s) | 26, 899, 929, 1142 |
| Sse9I | AATT | 2 cut(s) | 747, 1420 |
| SsiI | CCGC | 4 cut(s) | 268, 457, 889, 1171 |
| SspDI | GGCGCC | 1 cut(s) | 674 |
| SspMI | CTAG | 7 cut(s) | 33, 245, 434, 618, 765, 936, 1148 |
| StyD4I | CCNGG | 2 cut(s) | 36, 939 |
| StyI | CCWWGG | 3 cut(s) | 617, 648, 679 |
| TaaI | ACNGT | 4 cut(s) | 52, 598, 761, 955 |
| TaiI | ACGT | 6 cut(s) | 45, 222, 948, 1125, 1211, 1275 |
| TasI | AATT | 2 cut(s) | 747, 1420 |
| TatI | WGTACW | 1 cut(s) | 1056 |
| TfiI | GAWTC | 9 cut(s) | 5, 143, 345, 534, 730, 912, 925, 1046, 1323 |
| Tru1I | TTAA | 2 cut(s) | 1221, 1424 |
| Tru9I | TTAA | 2 cut(s) | 1221, 1424 |
| TseFI | GTSAC | 1 cut(s) | 1225 |
| TseI | GCWGC | 2 cut(s) | 989, 1247 |
| Tsp45I | GTSAC | 1 cut(s) | 1225 |
| TspDTI | ATGAA | 9 cut(s) | 179, 183, 368, 413, 557, 602, 1082, 1086, 1346 |
| TspGWI | ACGGA | 7 cut(s) | 212, 379, 568, 592, 1115, 1357, 1420 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1281 |
| XceI | RCATGY | 2 cut(s) | 874, 1258 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 620, 668 |
| XhoI | CTCGAG | 2 cut(s) | 26, 929 |
| XmaJI | CCTAGG | 1 cut(s) | 617 |
| XmiI | GTMKAC | 2 cut(s) | 13, 920 |
| XspI | CTAG | 7 cut(s) | 33, 245, 434, 618, 765, 936, 1148 |
| ZraI | GACGTC | 1 cut(s) | 1273 |