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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 585, 630 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 693 |
| AccB1I | GGYRCC | 2 cut(s) | 121, 827 |
| AciI | CCGC | 3 cut(s) | 706, 740, 993 |
| AclWI | GGATC | 3 cut(s) | 141, 781, 794 |
| AcuI | CTGAAG | 1 cut(s) | 513 |
| AcvI | CACGTG | 1 cut(s) | 516 |
| AdeI | CACNNNGTG | 1 cut(s) | 857 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 768, 773, 797, 841 |
| AflIII | ACRYGT | 1 cut(s) | 891 |
| AgsI | TTSAA | 6 cut(s) | 96, 307, 314, 343, 591, 964 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 410 |
| AjnI | CCWGG | 3 cut(s) | 129, 766, 790 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 8 cut(s) | 48, 247, 371, 427, 529, 551, 809, 968 |
| AluI | AGCT | 8 cut(s) | 48, 247, 371, 427, 529, 551, 809, 968 |
| Alw21I | GWGCWC | 2 cut(s) | 862, 984 |
| Alw26I | GTCTC | 1 cut(s) | 930 |
| Alw44I | GTGCAC | 2 cut(s) | 858, 980 |
| AlwI | GGATC | 3 cut(s) | 141, 781, 794 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 1 cut(s) | 593 |
| ApaLI | GTGCAC | 2 cut(s) | 858, 980 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspA2I | CCTAGG | 1 cut(s) | 839 |
| AspLEI | GCGC | 3 cut(s) | 259, 270, 651 |
| AspS9I | GGNCC | 2 cut(s) | 594, 695 |
| AsuHPI | GGTGA | 1 cut(s) | 940 |
| AvaII | GGWCC | 1 cut(s) | 695 |
| AvrII | CCTAGG | 1 cut(s) | 839 |
| BaeGI | GKGCMC | 2 cut(s) | 862, 984 |
| BamHI | GGATCC | 1 cut(s) | 786 |
| BanI | GGYRCC | 2 cut(s) | 121, 827 |
| BbrPI | CACGTG | 1 cut(s) | 516 |
| Bbv12I | GWGCWC | 2 cut(s) | 862, 984 |
| BccI | CCATC | 1 cut(s) | 746 |
| BciT130I | CCWGG | 3 cut(s) | 131, 768, 792 |
| BciVI | GTATCC | 1 cut(s) | 736 |
| BcoDI | GTCTC | 1 cut(s) | 930 |
| BfaI | CTAG | 3 cut(s) | 15, 260, 840 |
| BfmI | CTRYAG | 2 cut(s) | 380, 546 |
| BfoI | RGCGCY | 2 cut(s) | 260, 271 |
| BfuI | GTATCC | 1 cut(s) | 736 |
| BisI | GCNGC | 1 cut(s) | 993 |
| BlnI | CCTAGG | 1 cut(s) | 839 |
| BlsI | GCNGC | 1 cut(s) | 994 |
| Bme1390I | CCNGG | 3 cut(s) | 131, 768, 792 |
| Bme18I | GGWCC | 1 cut(s) | 695 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 2 cut(s) | 594, 695 |
| BmiI | GGNNCC | 4 cut(s) | 123, 696, 788, 829 |
| BmrFI | CCNGG | 3 cut(s) | 131, 768, 792 |
| BmsI | GCATC | 2 cut(s) | 226, 979 |
| BoxI | GACNNNNGTC | 1 cut(s) | 894 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| Bsa29I | ATCGAT | 1 cut(s) | 901 |
| BsaAI | YACGTR | 1 cut(s) | 516 |
| BsaJI | CCNNGG | 3 cut(s) | 767, 790, 839 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 763, 793 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 768, 773, 797, 841 |
| Bse3DI | GCAATG | 1 cut(s) | 763 |
| BseBI | CCWGG | 3 cut(s) | 131, 768, 792 |
| BseCI | ATCGAT | 1 cut(s) | 901 |
| BseDI | CCNNGG | 3 cut(s) | 767, 790, 839 |
| BseGI | GGATG | 3 cut(s) | 241, 800, 994 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 768, 773, 797, 841 |
| BseMI | GCAATG | 1 cut(s) | 763 |
| BseMII | CTCAG | 2 cut(s) | 543, 878 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 2 cut(s) | 862, 984 |
| BsgI | GTGCAG | 1 cut(s) | 472 |
| BshFI | GGCC | 1 cut(s) | 595 |
| BshNI | GGYRCC | 2 cut(s) | 121, 827 |
| BshVI | ATCGAT | 1 cut(s) | 901 |
| BsiHKAI | GWGCWC | 2 cut(s) | 862, 984 |
| BslFI | GGGAC | 1 cut(s) | 699 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 768, 773, 797, 841 |
| BsmAI | GTCTC | 1 cut(s) | 930 |
| BsmFI | GGGAC | 1 cut(s) | 699 |
| BsmI | GAATGC | 1 cut(s) | 612 |
| BsnI | GGCC | 1 cut(s) | 595 |
| Bsp1286I | GDGCHC | 2 cut(s) | 862, 984 |
| Bsp143I | GATC | 4 cut(s) | 133, 228, 510, 786 |
| BspACI | CCGC | 3 cut(s) | 706, 740, 993 |
| BspANI | GGCC | 1 cut(s) | 595 |
| BspCNI | CTCAG | 2 cut(s) | 544, 877 |
| BspDI | ATCGAT | 1 cut(s) | 901 |
| BspHI | TCATGA | 2 cut(s) | 573, 616 |
| BspLI | GGNNCC | 4 cut(s) | 123, 696, 788, 829 |
| BspPI | GGATC | 3 cut(s) | 141, 781, 794 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 827 |
| BsrDI | GCAATG | 1 cut(s) | 763 |
| BssECI | CCNNGG | 3 cut(s) | 767, 790, 839 |
| BssMI | GATC | 4 cut(s) | 133, 228, 510, 786 |
| BssT1I | CCWWGG | 1 cut(s) | 839 |
| Bst2UI | CCWGG | 3 cut(s) | 131, 768, 792 |
| Bst4CI | ACNGT | 2 cut(s) | 384, 728 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstBAI | YACGTR | 1 cut(s) | 516 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 4 cut(s) | 209, 552, 666, 864 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 771 |
| BstF5I | GGATG | 3 cut(s) | 241, 800, 994 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 271 |
| BstHHI | GCGC | 3 cut(s) | 259, 270, 651 |
| BstKTI | GATC | 4 cut(s) | 136, 231, 513, 789 |
| BstMAI | GTCTC | 1 cut(s) | 930 |
| BstMBI | GATC | 4 cut(s) | 133, 228, 510, 786 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| BstNI | CCWGG | 3 cut(s) | 131, 768, 792 |
| BstNSI | RCATGY | 2 cut(s) | 167, 895 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 894 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 3 cut(s) | 129, 766, 790 |
| BstSFI | CTRYAG | 2 cut(s) | 380, 546 |
| BstSLI | GKGCMC | 2 cut(s) | 862, 984 |
| BstX2I | RGATCY | 1 cut(s) | 786 |
| BstYI | RGATCY | 1 cut(s) | 786 |
| Bsu15I | ATCGAT | 1 cut(s) | 901 |
| BsuI | GTATCC | 1 cut(s) | 736 |
| BsuRI | GGCC | 1 cut(s) | 595 |
| BsuTUI | ATCGAT | 1 cut(s) | 901 |
| BtsCI | GGATG | 3 cut(s) | 241, 800, 994 |
| BtsIMutI | CAGTG | 1 cut(s) | 489 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CciI | TCATGA | 2 cut(s) | 573, 616 |
| CfoI | GCGC | 3 cut(s) | 259, 270, 651 |
| Cfr13I | GGNCC | 2 cut(s) | 594, 695 |
| ClaI | ATCGAT | 1 cut(s) | 901 |
| CviAII | CATG | 9 cut(s) | 31, 145, 164, 388, 560, 574, 617, 749, 892 |
| DdeI | CTNAG | 4 cut(s) | 209, 552, 666, 864 |
| DpnI | GATC | 4 cut(s) | 135, 230, 512, 788 |
| DpnII | GATC | 4 cut(s) | 133, 228, 510, 786 |
| DraIII | CACNNNGTG | 1 cut(s) | 857 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 693 |
| DriI | GACNNNNNGTC | 1 cut(s) | 410 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 693 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 410 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco130I | CCWWGG | 1 cut(s) | 839 |
| Eco47I | GGWCC | 1 cut(s) | 695 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco57I | CTGAAG | 1 cut(s) | 513 |
| Eco72I | CACGTG | 1 cut(s) | 516 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 771 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 3 cut(s) | 129, 766, 790 |
| EcoT14I | CCWWGG | 1 cut(s) | 839 |
| ErhI | CCWWGG | 1 cut(s) | 839 |
| FaeI | CATG | 9 cut(s) | 34, 148, 167, 391, 563, 577, 620, 752, 895 |
| FaqI | GGGAC | 1 cut(s) | 699 |
| FatI | CATG | 9 cut(s) | 30, 144, 163, 387, 559, 573, 616, 748, 891 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 993 |
| FokI | GGATG | 3 cut(s) | 248, 807, 1001 |
| Fsp4HI | GCNGC | 1 cut(s) | 993 |
| FspBI | CTAG | 3 cut(s) | 15, 260, 840 |
| GlaI | GCGC | 3 cut(s) | 258, 269, 650 |
| GluI | GCNGC | 1 cut(s) | 993 |
| HaeII | RGCGCY | 2 cut(s) | 260, 271 |
| HaeIII | GGCC | 1 cut(s) | 595 |
| HhaI | GCGC | 3 cut(s) | 259, 270, 651 |
| Hin1II | CATG | 9 cut(s) | 34, 148, 167, 391, 563, 577, 620, 752, 895 |
| Hin6I | GCGC | 3 cut(s) | 257, 268, 649 |
| HinP1I | GCGC | 3 cut(s) | 257, 268, 649 |
| HinfI | GANTC | 2 cut(s) | 38, 287 |
| HphI | GGTGA | 1 cut(s) | 940 |
| Hpy166II | GTNNAC | 2 cut(s) | 860, 982 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 367 |
| Hpy188III | TCNNGA | 3 cut(s) | 181, 574, 617 |
| Hpy8I | GTNNAC | 2 cut(s) | 860, 982 |
| HpyAV | CCTTC | 4 cut(s) | 301, 460, 713, 845 |
| HpyCH4III | ACNGT | 2 cut(s) | 384, 728 |
| HpyCH4IV | ACGT | 3 cut(s) | 515, 688, 856 |
| HpyCH4V | TGCA | 5 cut(s) | 239, 489, 635, 860, 982 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| HpyF3I | CTNAG | 4 cut(s) | 209, 552, 666, 864 |
| HpySE526I | ACGT | 3 cut(s) | 515, 688, 856 |
| Hsp92II | CATG | 9 cut(s) | 34, 148, 167, 391, 563, 577, 620, 752, 895 |
| HspAI | GCGC | 3 cut(s) | 257, 268, 649 |
| Kzo9I | GATC | 4 cut(s) | 133, 228, 510, 786 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LmnI | GCTCC | 2 cut(s) | 655, 806 |
| LpnPI | CCDG | 9 cut(s) | 104, 116, 143, 423, 489, 753, 777, 780, 804 |
| LweI | GCATC | 2 cut(s) | 226, 979 |
| MaeI | CTAG | 3 cut(s) | 15, 260, 840 |
| MaeII | ACGT | 3 cut(s) | 515, 688, 856 |
| MaeIII | GTNAC | 2 cut(s) | 67, 412 |
| MalI | GATC | 4 cut(s) | 135, 230, 512, 788 |
| MboI | GATC | 4 cut(s) | 133, 228, 510, 786 |
| MboII | GAAGA | 5 cut(s) | 275, 365, 929, 932, 935 |
| MflI | RGATCY | 1 cut(s) | 786 |
| MhlI | GDGCHC | 2 cut(s) | 862, 984 |
| MluCI | AATT | 6 cut(s) | 114, 361, 429, 580, 586, 625 |
| MlyI | GAGTC | 1 cut(s) | 32 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MseI | TTAA | 3 cut(s) | 711, 869, 911 |
| MslI | CAYNNNNRTG | 3 cut(s) | 572, 903, 987 |
| MspR9I | CCNGG | 3 cut(s) | 131, 768, 792 |
| Mva1269I | GAATGC | 1 cut(s) | 612 |
| MvaI | CCWGG | 3 cut(s) | 131, 768, 792 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 4 cut(s) | 133, 228, 510, 786 |
| NlaIII | CATG | 9 cut(s) | 34, 148, 167, 391, 563, 577, 620, 752, 895 |
| NlaIV | GGNNCC | 4 cut(s) | 123, 696, 788, 829 |
| NmuCI | GTSAC | 1 cut(s) | 412 |
| NspI | RCATGY | 2 cut(s) | 167, 895 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 2 cut(s) | 573, 616 |
| PciI | ACATGT | 1 cut(s) | 891 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PctI | GAATGC | 1 cut(s) | 612 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 1 cut(s) | 994 |
| PleI | GAGTC | 1 cut(s) | 32 |
| PmaCI | CACGTG | 1 cut(s) | 516 |
| PmlI | CACGTG | 1 cut(s) | 516 |
| PpsI | GAGTC | 1 cut(s) | 32 |
| Ppu21I | YACGTR | 1 cut(s) | 516 |
| PscI | ACATGT | 1 cut(s) | 891 |
| PshAI | GACNNNNGTC | 1 cut(s) | 894 |
| PsiI | TTATAA | 2 cut(s) | 585, 630 |
| Psp6I | CCWGG | 3 cut(s) | 129, 766, 790 |
| PspCI | CACGTG | 1 cut(s) | 516 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 3 cut(s) | 129, 766, 790 |
| PspN4I | GGNNCC | 4 cut(s) | 123, 696, 788, 829 |
| PspPI | GGNCC | 2 cut(s) | 594, 695 |
| PsuI | RGATCY | 1 cut(s) | 786 |
| RseI | CAYNNNNRTG | 3 cut(s) | 572, 903, 987 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SaqAI | TTAA | 3 cut(s) | 711, 869, 911 |
| SatI | GCNGC | 1 cut(s) | 993 |
| Sau3AI | GATC | 4 cut(s) | 133, 228, 510, 786 |
| Sau96I | GGNCC | 2 cut(s) | 594, 695 |
| SchI | GAGTC | 1 cut(s) | 32 |
| ScrFI | CCNGG | 3 cut(s) | 131, 768, 792 |
| SduI | GDGCHC | 2 cut(s) | 862, 984 |
| SfaNI | GCATC | 2 cut(s) | 226, 979 |
| SfcI | CTRYAG | 2 cut(s) | 380, 546 |
| SinI | GGWCC | 1 cut(s) | 695 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 572, 903, 987 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 6 cut(s) | 114, 361, 429, 580, 586, 625 |
| SsiI | CCGC | 3 cut(s) | 706, 740, 993 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 3 cut(s) | 15, 260, 840 |
| StyD4I | CCNGG | 3 cut(s) | 129, 766, 790 |
| StyI | CCWWGG | 1 cut(s) | 839 |
| TaaI | ACNGT | 2 cut(s) | 384, 728 |
| TaiI | ACGT | 3 cut(s) | 518, 691, 859 |
| TaqI | TCGA | 3 cut(s) | 5, 227, 901 |
| TasI | AATT | 6 cut(s) | 114, 361, 429, 580, 586, 625 |
| TauI | GCSGC | 1 cut(s) | 995 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 3 cut(s) | 711, 869, 911 |
| Tru9I | TTAA | 3 cut(s) | 711, 869, 911 |
| TscAI | CASTG | 1 cut(s) | 496 |
| TseFI | GTSAC | 1 cut(s) | 412 |
| Tsp45I | GTSAC | 1 cut(s) | 412 |
| TspDTI | ATGAA | 5 cut(s) | 24, 133, 512, 605, 990 |
| TspRI | CASTG | 1 cut(s) | 496 |
| VneI | GTGCAC | 2 cut(s) | 858, 980 |
| VpaK11BI | GGWCC | 1 cut(s) | 695 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 771 |
| XceI | RCATGY | 2 cut(s) | 167, 895 |
| XmaJI | CCTAGG | 1 cut(s) | 839 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 3 cut(s) | 15, 260, 840 |