ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1130 |
| AciI | CCGC | 2 cut(s) | 4, 47 |
| AclWI | GGATC | 2 cut(s) | 434, 1061 |
| AcoI | YGGCCR | 1 cut(s) | 198 |
| AcyI | GRCGYC | 1 cut(s) | 1131 |
| AdeI | CACNNNGTG | 1 cut(s) | 1312 |
| AfaI | GTAC | 1 cut(s) | 915 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 434, 449 |
| AflII | CTTAAG | 2 cut(s) | 20, 505 |
| AgsI | TTSAA | 4 cut(s) | 84, 485, 886, 1168 |
| AjiI | CACGTC | 1 cut(s) | 646 |
| AjnI | CCWGG | 1 cut(s) | 55 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 798, 830 |
| AluBI | AGCT | 7 cut(s) | 224, 488, 653, 665, 671, 1253, 1304 |
| AluI | AGCT | 7 cut(s) | 224, 488, 653, 665, 671, 1253, 1304 |
| Alw21I | GWGCWC | 1 cut(s) | 1255 |
| Alw26I | GTCTC | 2 cut(s) | 802, 1006 |
| AlwI | GGATC | 2 cut(s) | 434, 1061 |
| Ama87I | CYCGRG | 1 cut(s) | 629 |
| AoxI | GGCC | 2 cut(s) | 198, 215 |
| ApeKI | GCWGC | 3 cut(s) | 221, 289, 689 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 915 |
| AspLEI | GCGC | 1 cut(s) | 1133 |
| AspS9I | GGNCC | 1 cut(s) | 215 |
| AsuC2I | CCSGG | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 2 cut(s) | 355, 449 |
| AvaI | CYCGRG | 1 cut(s) | 629 |
| AxyI | CCTNAGG | 1 cut(s) | 432 |
| BaeGI | GKGCMC | 1 cut(s) | 1240 |
| BalI | TGGCCA | 1 cut(s) | 200 |
| BanI | GGYRCC | 1 cut(s) | 1130 |
| BanII | GRGCYC | 1 cut(s) | 1255 |
| BauI | CACGAG | 1 cut(s) | 1254 |
| BbsI | GAAGAC | 2 cut(s) | 783, 986 |
| Bbv12I | GWGCWC | 1 cut(s) | 1255 |
| BbvI | GCAGC | 3 cut(s) | 233, 301, 701 |
| BccI | CCATC | 6 cut(s) | 185, 239, 725, 852, 1006, 1158 |
| BceAI | ACGGC | 1 cut(s) | 312 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1025, 1059 |
| BciT130I | CCWGG | 1 cut(s) | 57 |
| BcnI | CCSGG | 1 cut(s) | 214 |
| BcoDI | GTCTC | 2 cut(s) | 802, 1006 |
| BfaI | CTAG | 5 cut(s) | 96, 489, 636, 848, 1340 |
| BfmI | CTRYAG | 2 cut(s) | 219, 606 |
| BfoI | RGCGCY | 1 cut(s) | 1134 |
| BfrI | CTTAAG | 2 cut(s) | 20, 505 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 698 |
| BisI | GCNGC | 3 cut(s) | 222, 290, 690 |
| BlsI | GCNGC | 3 cut(s) | 223, 291, 691 |
| BmcAI | AGTACT | 1 cut(s) | 915 |
| Bme1390I | CCNGG | 2 cut(s) | 57, 214 |
| BmeT110I | CYCGRG | 1 cut(s) | 629 |
| BmgBI | CACGTC | 1 cut(s) | 646 |
| BmgT120I | GGNCC | 1 cut(s) | 215 |
| BmiI | GGNNCC | 1 cut(s) | 1132 |
| BmrFI | CCNGG | 2 cut(s) | 57, 214 |
| BmsI | GCATC | 4 cut(s) | 163, 369, 604, 952 |
| BpiI | GAAGAC | 2 cut(s) | 783, 986 |
| BpmI | CTGGAG | 1 cut(s) | 737 |
| BpuEI | CTTGAG | 2 cut(s) | 584, 651 |
| BpuMI | CCSGG | 1 cut(s) | 214 |
| Bsa29I | ATCGAT | 1 cut(s) | 1035 |
| BsaHI | GRCGYC | 1 cut(s) | 1131 |
| BsaI | GGTCTC | 1 cut(s) | 802 |
| BsaJI | CCNNGG | 5 cut(s) | 137, 170, 201, 465, 868 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 434, 449 |
| Bse1I | ACTGG | 3 cut(s) | 113, 559, 754 |
| Bse21I | CCTNAGG | 1 cut(s) | 432 |
| Bse3DI | GCAATG | 1 cut(s) | 1114 |
| BseBI | CCWGG | 1 cut(s) | 57 |
| BseCI | ATCGAT | 1 cut(s) | 1035 |
| BseDI | CCNNGG | 5 cut(s) | 137, 170, 201, 465, 868 |
| BseGI | GGATG | 4 cut(s) | 154, 516, 720, 748 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 434, 449 |
| BseMI | GCAATG | 1 cut(s) | 1114 |
| BseMII | CTCAG | 3 cut(s) | 423, 813, 1218 |
| BseNI | ACTGG | 3 cut(s) | 113, 559, 754 |
| BseRI | GAGGAG | 1 cut(s) | 414 |
| BseSI | GKGCMC | 1 cut(s) | 1240 |
| BseXI | GCAGC | 3 cut(s) | 233, 301, 701 |
| BsgI | GTGCAG | 1 cut(s) | 117 |
| BshFI | GGCC | 2 cut(s) | 200, 217 |
| BshNI | GGYRCC | 1 cut(s) | 1130 |
| BshVI | ATCGAT | 1 cut(s) | 1035 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1255 |
| BsiHKCI | CYCGRG | 1 cut(s) | 629 |
| BsiSI | CCGG | 1 cut(s) | 213 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 434, 449 |
| BsmAI | GTCTC | 2 cut(s) | 802, 1006 |
| BsmBI | CGTCTC | 1 cut(s) | 1006 |
| BsnI | GGCC | 2 cut(s) | 200, 217 |
| Bso31I | GGTCTC | 1 cut(s) | 802 |
| BsoBI | CYCGRG | 1 cut(s) | 629 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1240, 1255 |
| Bsp143I | GATC | 4 cut(s) | 439, 954, 1053, 1336 |
| BspACI | CCGC | 2 cut(s) | 4, 47 |
| BspANI | GGCC | 2 cut(s) | 200, 217 |
| BspCNI | CTCAG | 3 cut(s) | 424, 812, 1219 |
| BspDI | ATCGAT | 1 cut(s) | 1035 |
| BspLI | GGNNCC | 1 cut(s) | 1132 |
| BspMAI | CTGCAG | 1 cut(s) | 223 |
| BspPI | GGATC | 2 cut(s) | 434, 1061 |
| BspT107I | GGYRCC | 1 cut(s) | 1130 |
| BspTI | CTTAAG | 2 cut(s) | 20, 505 |
| BspTNI | GGTCTC | 1 cut(s) | 802 |
| BsrDI | GCAATG | 1 cut(s) | 1114 |
| BsrI | ACTGG | 3 cut(s) | 113, 559, 754 |
| BssECI | CCNNGG | 5 cut(s) | 137, 170, 201, 465, 868 |
| BssMI | GATC | 4 cut(s) | 439, 954, 1053, 1336 |
| BssNI | GRCGYC | 1 cut(s) | 1131 |
| BssSI | CACGAG | 1 cut(s) | 1254 |
| BssT1I | CCWWGG | 3 cut(s) | 170, 201, 465 |
| Bst2BI | CACGAG | 1 cut(s) | 1254 |
| Bst2UI | CCWGG | 1 cut(s) | 57 |
| Bst6I | CTCTTC | 2 cut(s) | 165, 1072 |
| BstACI | GRCGYC | 1 cut(s) | 1131 |
| BstAFI | CTTAAG | 2 cut(s) | 20, 505 |
| BstC8I | GCNNGC | 3 cut(s) | 219, 593, 663 |
| BstDEI | CTNAG | 6 cut(s) | 432, 694, 799, 1020, 1143, 1227 |
| BstF5I | GGATG | 4 cut(s) | 154, 516, 720, 748 |
| BstH2I | RGCGCY | 1 cut(s) | 1134 |
| BstHHI | GCGC | 1 cut(s) | 1133 |
| BstKTI | GATC | 4 cut(s) | 442, 957, 1056, 1339 |
| BstMAI | GTCTC | 2 cut(s) | 802, 1006 |
| BstMBI | GATC | 4 cut(s) | 439, 954, 1053, 1336 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 677, 686, 698, 707, 1280, 1301 |
| BstNI | CCWGG | 1 cut(s) | 57 |
| BstNSI | RCATGY | 1 cut(s) | 419 |
| BstSCI | CCNGG | 2 cut(s) | 55, 212 |
| BstSFI | CTRYAG | 2 cut(s) | 219, 606 |
| BstSLI | GKGCMC | 1 cut(s) | 1240 |
| BstV1I | GCAGC | 3 cut(s) | 233, 301, 701 |
| BstV2I | GAAGAC | 2 cut(s) | 783, 986 |
| Bsu15I | ATCGAT | 1 cut(s) | 1035 |
| Bsu36I | CCTNAGG | 1 cut(s) | 432 |
| BsuRI | GGCC | 2 cut(s) | 200, 217 |
| BsuTUI | ATCGAT | 1 cut(s) | 1035 |
| BtgZI | GCGATG | 1 cut(s) | 980 |
| BtrI | CACGTC | 1 cut(s) | 646 |
| BtsCI | GGATG | 4 cut(s) | 154, 516, 720, 748 |
| Cac8I | GCNNGC | 3 cut(s) | 219, 593, 663 |
| CfoI | GCGC | 1 cut(s) | 1133 |
| Cfr13I | GGNCC | 1 cut(s) | 215 |
| ClaI | ATCGAT | 1 cut(s) | 1035 |
| CsiI | ACCWGGT | 1 cut(s) | 55 |
| Csp6I | GTAC | 1 cut(s) | 914 |
| CviAII | CATG | 2 cut(s) | 416, 1121 |
| CviQI | GTAC | 1 cut(s) | 914 |
| DdeI | CTNAG | 6 cut(s) | 432, 694, 799, 1020, 1143, 1227 |
| DinI | GGCGCC | 1 cut(s) | 1132 |
| DpnI | GATC | 4 cut(s) | 441, 956, 1055, 1338 |
| DpnII | GATC | 4 cut(s) | 439, 954, 1053, 1336 |
| DraIII | CACNNNGTG | 1 cut(s) | 1312 |
| EaeI | YGGCCR | 1 cut(s) | 198 |
| Eam1104I | CTCTTC | 2 cut(s) | 165, 1072 |
| EarI | CTCTTC | 2 cut(s) | 165, 1072 |
| Ecl136II | GAGCTC | 1 cut(s) | 1253 |
| Eco130I | CCWWGG | 3 cut(s) | 170, 201, 465 |
| Eco24I | GRGCYC | 1 cut(s) | 1255 |
| Eco31I | GGTCTC | 1 cut(s) | 802 |
| Eco32I | GATATC | 1 cut(s) | 566 |
| Eco53kI | GAGCTC | 1 cut(s) | 1253 |
| Eco81I | CCTNAGG | 1 cut(s) | 432 |
| Eco88I | CYCGRG | 1 cut(s) | 629 |
| EcoICRI | GAGCTC | 1 cut(s) | 1253 |
| EcoRII | CCWGG | 1 cut(s) | 55 |
| EcoRV | GATATC | 1 cut(s) | 566 |
| EcoT14I | CCWWGG | 3 cut(s) | 170, 201, 465 |
| EcoT38I | GRGCYC | 1 cut(s) | 1255 |
| EgeI | GGCGCC | 1 cut(s) | 1132 |
| EheI | GGCGCC | 1 cut(s) | 1132 |
| ErhI | CCWWGG | 3 cut(s) | 170, 201, 465 |
| Esp3I | CGTCTC | 1 cut(s) | 1006 |
| FaeI | CATG | 2 cut(s) | 419, 1124 |
| FatI | CATG | 2 cut(s) | 415, 1120 |
| FauI | CCCGC | 1 cut(s) | 54 |
| FauNDI | CATATG | 1 cut(s) | 738 |
| Fnu4HI | GCNGC | 3 cut(s) | 222, 290, 690 |
| FokI | GGATG | 4 cut(s) | 141, 523, 707, 755 |
| FriOI | GRGCYC | 1 cut(s) | 1255 |
| Fsp4HI | GCNGC | 3 cut(s) | 222, 290, 690 |
| FspBI | CTAG | 5 cut(s) | 96, 489, 636, 848, 1340 |
| GlaI | GCGC | 1 cut(s) | 1132 |
| GluI | GCNGC | 3 cut(s) | 222, 290, 690 |
| GsuI | CTGGAG | 1 cut(s) | 737 |
| HaeII | RGCGCY | 1 cut(s) | 1134 |
| HaeIII | GGCC | 2 cut(s) | 200, 217 |
| HapII | CCGG | 1 cut(s) | 213 |
| HhaI | GCGC | 1 cut(s) | 1133 |
| Hin1I | GRCGYC | 1 cut(s) | 1131 |
| Hin1II | CATG | 2 cut(s) | 419, 1124 |
| Hin6I | GCGC | 1 cut(s) | 1131 |
| HinP1I | GCGC | 1 cut(s) | 1131 |
| HindIII | AAGCTT | 1 cut(s) | 669 |
| HpaII | CCGG | 1 cut(s) | 213 |
| HphI | GGTGA | 2 cut(s) | 355, 449 |
| Hpy188I | TCNGA | 8 cut(s) | 141, 309, 370, 408, 444, 460, 910, 1228 |
| HpyAV | CCTTC | 3 cut(s) | 176, 442, 780 |
| HpyCH4IV | ACGT | 2 cut(s) | 645, 822 |
| HpyCH4V | TGCA | 3 cut(s) | 134, 221, 1046 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 677, 686, 698, 707, 1280, 1301 |
| HpyF3I | CTNAG | 6 cut(s) | 432, 694, 799, 1020, 1143, 1227 |
| HpySE526I | ACGT | 2 cut(s) | 645, 822 |
| Hsp92I | GRCGYC | 1 cut(s) | 1131 |
| Hsp92II | CATG | 2 cut(s) | 419, 1124 |
| HspAI | GCGC | 1 cut(s) | 1131 |
| KasI | GGCGCC | 1 cut(s) | 1130 |
| Kzo9I | GATC | 4 cut(s) | 439, 954, 1053, 1336 |
| LmnI | GCTCC | 2 cut(s) | 544, 756 |
| Lsp1109I | GCAGC | 3 cut(s) | 233, 301, 701 |
| LweI | GCATC | 4 cut(s) | 163, 369, 604, 952 |
| MabI | ACCWGGT | 1 cut(s) | 55 |
| MaeI | CTAG | 5 cut(s) | 96, 489, 636, 848, 1340 |
| MaeII | ACGT | 2 cut(s) | 645, 822 |
| MaeIII | GTNAC | 4 cut(s) | 418, 515, 827, 1267 |
| MalI | GATC | 4 cut(s) | 441, 956, 1055, 1338 |
| MboI | GATC | 4 cut(s) | 439, 954, 1053, 1336 |
| MfeI | CAATTG | 1 cut(s) | 121 |
| MhlI | GDGCHC | 2 cut(s) | 1240, 1255 |
| MlsI | TGGCCA | 1 cut(s) | 200 |
| MluCI | AATT | 4 cut(s) | 121, 256, 527, 938 |
| MluNI | TGGCCA | 1 cut(s) | 200 |
| Mly113I | GGCGCC | 1 cut(s) | 1131 |
| MlyI | GAGTC | 5 cut(s) | 243, 470, 724, 824, 976 |
| Mox20I | TGGCCA | 1 cut(s) | 200 |
| MroXI | GAANNNNTTC | 1 cut(s) | 915 |
| MscI | TGGCCA | 1 cut(s) | 200 |
| MseI | TTAA | 5 cut(s) | 21, 177, 506, 924, 932 |
| MslI | CAYNNNNRTG | 4 cut(s) | 725, 741, 1125, 1155 |
| Msp20I | TGGCCA | 1 cut(s) | 200 |
| MspCI | CTTAAG | 2 cut(s) | 20, 505 |
| MspI | CCGG | 1 cut(s) | 213 |
| MspR9I | CCNGG | 2 cut(s) | 57, 214 |
| MunI | CAATTG | 1 cut(s) | 121 |
| MvaI | CCWGG | 1 cut(s) | 57 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 677, 686, 698, 707, 1280, 1301 |
| NarI | GGCGCC | 1 cut(s) | 1131 |
| NciI | CCSGG | 1 cut(s) | 214 |
| NdeI | CATATG | 1 cut(s) | 738 |
| NdeII | GATC | 4 cut(s) | 439, 954, 1053, 1336 |
| NlaIII | CATG | 2 cut(s) | 419, 1124 |
| NlaIV | GGNNCC | 1 cut(s) | 1132 |
| NmeAIII | GCCGAG | 1 cut(s) | 849 |
| NmuCI | GTSAC | 3 cut(s) | 418, 827, 1267 |
| NspI | RCATGY | 1 cut(s) | 419 |
| PaeR7I | CTCGAG | 1 cut(s) | 629 |
| PdmI | GAANNNNTTC | 1 cut(s) | 915 |
| PfeI | GAWTC | 8 cut(s) | 31, 80, 109, 612, 625, 746, 1032, 1072 |
| PkrI | GCNGC | 3 cut(s) | 223, 291, 691 |
| PleI | GAGTC | 5 cut(s) | 242, 469, 724, 824, 976 |
| PluTI | GGCGCC | 1 cut(s) | 1134 |
| PpsI | GAGTC | 5 cut(s) | 242, 469, 724, 824, 976 |
| Psp124BI | GAGCTC | 1 cut(s) | 1255 |
| Psp6I | CCWGG | 1 cut(s) | 55 |
| PspGI | CCWGG | 1 cut(s) | 55 |
| PspN4I | GGNNCC | 1 cut(s) | 1132 |
| PspPI | GGNCC | 1 cut(s) | 215 |
| PstI | CTGCAG | 1 cut(s) | 223 |
| RsaI | GTAC | 1 cut(s) | 915 |
| RsaNI | GTAC | 1 cut(s) | 914 |
| RseI | CAYNNNNRTG | 4 cut(s) | 725, 741, 1125, 1155 |
| SacI | GAGCTC | 1 cut(s) | 1255 |
| SaqAI | TTAA | 5 cut(s) | 21, 177, 506, 924, 932 |
| SatI | GCNGC | 3 cut(s) | 222, 290, 690 |
| Sau3AI | GATC | 4 cut(s) | 439, 954, 1053, 1336 |
| Sau96I | GGNCC | 1 cut(s) | 215 |
| ScaI | AGTACT | 1 cut(s) | 915 |
| SchI | GAGTC | 5 cut(s) | 243, 470, 724, 824, 976 |
| ScrFI | CCNGG | 2 cut(s) | 57, 214 |
| SduI | GDGCHC | 2 cut(s) | 1240, 1255 |
| SexAI | ACCWGGT | 1 cut(s) | 55 |
| SfaNI | GCATC | 4 cut(s) | 163, 369, 604, 952 |
| SfcI | CTRYAG | 2 cut(s) | 219, 606 |
| SfoI | GGCGCC | 1 cut(s) | 1132 |
| Sfr274I | CTCGAG | 1 cut(s) | 629 |
| SlaI | CTCGAG | 1 cut(s) | 629 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 725, 741, 1125, 1155 |
| SmlI | CTYRAG | 5 cut(s) | 20, 505, 599, 629, 666 |
| SmoI | CTYRAG | 5 cut(s) | 20, 505, 599, 629, 666 |
| Sse9I | AATT | 4 cut(s) | 121, 256, 527, 938 |
| SsiI | CCGC | 2 cut(s) | 4, 47 |
| SspDI | GGCGCC | 1 cut(s) | 1130 |
| SspMI | CTAG | 5 cut(s) | 96, 489, 636, 848, 1340 |
| SstI | GAGCTC | 1 cut(s) | 1255 |
| StyD4I | CCNGG | 2 cut(s) | 55, 212 |
| StyI | CCWWGG | 3 cut(s) | 170, 201, 465 |
| TaiI | ACGT | 2 cut(s) | 648, 825 |
| TaqI | TCGA | 7 cut(s) | 630, 804, 1030, 1035, 1075, 1191, 1213 |
| TasI | AATT | 4 cut(s) | 121, 256, 527, 938 |
| TatI | WGTACW | 1 cut(s) | 913 |
| TfiI | GAWTC | 8 cut(s) | 31, 80, 109, 612, 625, 746, 1032, 1072 |
| Tru1I | TTAA | 5 cut(s) | 21, 177, 506, 924, 932 |
| Tru9I | TTAA | 5 cut(s) | 21, 177, 506, 924, 932 |
| TseFI | GTSAC | 3 cut(s) | 418, 827, 1267 |
| TseI | GCWGC | 3 cut(s) | 221, 289, 689 |
| Tsp45I | GTSAC | 3 cut(s) | 418, 827, 1267 |
| TspDTI | ATGAA | 3 cut(s) | 337, 782, 786 |
| TspGWI | ACGGA | 3 cut(s) | 815, 1066, 1084 |
| Vha464I | CTTAAG | 2 cut(s) | 20, 505 |
| XbaI | TCTAGA | 1 cut(s) | 1339 |
| XceI | RCATGY | 1 cut(s) | 419 |
| XhoI | CTCGAG | 1 cut(s) | 629 |
| XmnI | GAANNNNTTC | 1 cut(s) | 915 |
| XspI | CTAG | 5 cut(s) | 96, 489, 636, 848, 1340 |
| ZrmI | AGTACT | 1 cut(s) | 915 |