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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 429 |
| AccII | CGCG | 1 cut(s) | 414 |
| AciI | CCGC | 1 cut(s) | 508 |
| AclWI | GGATC | 1 cut(s) | 470 |
| AcoI | YGGCCR | 1 cut(s) | 574 |
| AfaI | GTAC | 1 cut(s) | 653 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 425 |
| AflII | CTTAAG | 1 cut(s) | 452 |
| AgsI | TTSAA | 2 cut(s) | 121, 625 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 1 cut(s) | 307 |
| AluI | AGCT | 1 cut(s) | 307 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| Alw26I | GTCTC | 2 cut(s) | 37, 364 |
| AlwI | GGATC | 1 cut(s) | 470 |
| AoxI | GGCC | 1 cut(s) | 574 |
| AspLEI | GCGC | 2 cut(s) | 416, 631 |
| AsuII | TTCGAA | 1 cut(s) | 395 |
| BalI | TGGCCA | 1 cut(s) | 576 |
| BanI | GGYRCC | 1 cut(s) | 429 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BccI | CCATC | 3 cut(s) | 87, 163, 615 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BclI | TGATCA | 1 cut(s) | 288 |
| BcoDI | GTCTC | 2 cut(s) | 37, 364 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 1 cut(s) | 632 |
| BfrI | CTTAAG | 1 cut(s) | 452 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BmiI | GGNNCC | 2 cut(s) | 431, 589 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| Bpu14I | TTCGAA | 1 cut(s) | 395 |
| BpuEI | CTTGAG | 1 cut(s) | 323 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaWI | WCCGGW | 1 cut(s) | 105 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 635, 665 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 425 |
| Bse3DI | GCAATG | 3 cut(s) | 61, 309, 571 |
| BseGI | GGATG | 2 cut(s) | 345, 607 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseMI | GCAATG | 3 cut(s) | 61, 309, 571 |
| BseMII | CTCAG | 2 cut(s) | 375, 639 |
| Bsh1236I | CGCG | 1 cut(s) | 414 |
| BshFI | GGCC | 1 cut(s) | 576 |
| BshNI | GGYRCC | 1 cut(s) | 429 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 106 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BsmAI | GTCTC | 2 cut(s) | 37, 364 |
| BsnI | GGCC | 1 cut(s) | 576 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp119I | TTCGAA | 1 cut(s) | 395 |
| Bsp1286I | GDGCHC | 1 cut(s) | 309 |
| Bsp143I | GATC | 2 cut(s) | 288, 475 |
| BspACI | CCGC | 1 cut(s) | 508 |
| BspANI | GGCC | 1 cut(s) | 576 |
| BspCNI | CTCAG | 2 cut(s) | 376, 640 |
| BspFNI | CGCG | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 318 |
| BspLI | GGNNCC | 2 cut(s) | 431, 589 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BspT104I | TTCGAA | 1 cut(s) | 395 |
| BspT107I | GGYRCC | 1 cut(s) | 429 |
| BspTI | CTTAAG | 1 cut(s) | 452 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrDI | GCAATG | 3 cut(s) | 61, 309, 571 |
| BssMI | GATC | 2 cut(s) | 288, 475 |
| Bst4CI | ACNGT | 2 cut(s) | 280, 599 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstAFI | CTTAAG | 1 cut(s) | 452 |
| BstBI | TTCGAA | 1 cut(s) | 395 |
| BstDEI | CTNAG | 4 cut(s) | 255, 384, 420, 648 |
| BstEII | GGTNACC | 1 cut(s) | 503 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 2 cut(s) | 345, 607 |
| BstFNI | CGCG | 1 cut(s) | 414 |
| BstH2I | RGCGCY | 1 cut(s) | 632 |
| BstHHI | GCGC | 2 cut(s) | 416, 631 |
| BstKTI | GATC | 2 cut(s) | 291, 478 |
| BstMAI | GTCTC | 2 cut(s) | 37, 364 |
| BstMBI | GATC | 2 cut(s) | 288, 475 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 626 |
| BstPI | GGTNACC | 1 cut(s) | 503 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstUI | CGCG | 1 cut(s) | 414 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuRI | GGCC | 1 cut(s) | 576 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 2 cut(s) | 345, 607 |
| CciI | TCATGA | 1 cut(s) | 318 |
| CfoI | GCGC | 2 cut(s) | 416, 631 |
| CseI | GACGC | 1 cut(s) | 626 |
| Csp6I | GTAC | 1 cut(s) | 652 |
| CviAII | CATG | 3 cut(s) | 319, 338, 578 |
| CviJI | RGCY | 6 cut(s) | 25, 102, 307, 576, 588, 606 |
| CviKI_1 | RGCY | 6 cut(s) | 25, 102, 307, 576, 588, 606 |
| CviQI | GTAC | 1 cut(s) | 652 |
| DdeI | CTNAG | 4 cut(s) | 255, 384, 420, 648 |
| DpnI | GATC | 2 cut(s) | 290, 477 |
| DpnII | GATC | 2 cut(s) | 288, 475 |
| EaeI | YGGCCR | 1 cut(s) | 574 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| Eco91I | GGTNACC | 1 cut(s) | 503 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 423 |
| EcoO65I | GGTNACC | 1 cut(s) | 503 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| FaeI | CATG | 3 cut(s) | 322, 341, 581 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 206, 238 |
| FatI | CATG | 3 cut(s) | 318, 337, 577 |
| FauNDI | CATATG | 1 cut(s) | 196 |
| FbaI | TGATCA | 1 cut(s) | 288 |
| FokI | GGATG | 2 cut(s) | 332, 594 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 2 cut(s) | 415, 630 |
| HaeII | RGCGCY | 1 cut(s) | 632 |
| HaeIII | GGCC | 1 cut(s) | 576 |
| HapII | CCGG | 1 cut(s) | 106 |
| HgaI | GACGC | 1 cut(s) | 626 |
| HhaI | GCGC | 2 cut(s) | 416, 631 |
| Hin1II | CATG | 3 cut(s) | 322, 341, 581 |
| Hin6I | GCGC | 2 cut(s) | 414, 629 |
| HinP1I | GCGC | 2 cut(s) | 414, 629 |
| HinfI | GANTC | 3 cut(s) | 65, 537, 644 |
| HpaII | CCGG | 1 cut(s) | 106 |
| Hpy188I | TCNGA | 2 cut(s) | 475, 649 |
| Hpy188III | TCNNGA | 6 cut(s) | 77, 302, 319, 369, 465, 669 |
| HpyAV | CCTTC | 2 cut(s) | 15, 238 |
| HpyCH4III | ACNGT | 2 cut(s) | 280, 599 |
| HpyCH4V | TGCA | 1 cut(s) | 314 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 626 |
| HpyF3I | CTNAG | 4 cut(s) | 255, 384, 420, 648 |
| Hsp92II | CATG | 3 cut(s) | 322, 341, 581 |
| HspAI | GCGC | 2 cut(s) | 414, 629 |
| Ksp22I | TGATCA | 1 cut(s) | 288 |
| Kzo9I | GATC | 2 cut(s) | 288, 475 |
| LmnI | GCTCC | 1 cut(s) | 593 |
| LpnPI | CCDG | 6 cut(s) | 31, 83, 90, 119, 450, 558 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeIII | GTNAC | 2 cut(s) | 274, 503 |
| MalI | GATC | 2 cut(s) | 290, 477 |
| MboI | GATC | 2 cut(s) | 288, 475 |
| MboII | GAAGA | 6 cut(s) | 20, 23, 53, 226, 367, 546 |
| MhlI | GDGCHC | 1 cut(s) | 309 |
| MlsI | TGGCCA | 1 cut(s) | 576 |
| MluCI | AATT | 4 cut(s) | 173, 267, 364, 403 |
| MluNI | TGGCCA | 1 cut(s) | 576 |
| MlyI | GAGTC | 3 cut(s) | 59, 546, 653 |
| MnlI | CCTC | 5 cut(s) | 113, 419, 554, 580, 642 |
| Mox20I | TGGCCA | 1 cut(s) | 576 |
| MscI | TGGCCA | 1 cut(s) | 576 |
| MseI | TTAA | 3 cut(s) | 159, 245, 453 |
| MslI | CAYNNNNRTG | 3 cut(s) | 350, 582, 612 |
| Msp20I | TGGCCA | 1 cut(s) | 576 |
| MspCI | CTTAAG | 1 cut(s) | 452 |
| MspI | CCGG | 1 cut(s) | 106 |
| MvnI | CGCG | 1 cut(s) | 414 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 626 |
| NdeI | CATATG | 1 cut(s) | 196 |
| NdeII | GATC | 2 cut(s) | 288, 475 |
| NlaIII | CATG | 3 cut(s) | 322, 341, 581 |
| NlaIV | GGNNCC | 2 cut(s) | 431, 589 |
| NspV | TTCGAA | 1 cut(s) | 395 |
| PagI | TCATGA | 1 cut(s) | 318 |
| PleI | GAGTC | 3 cut(s) | 59, 545, 652 |
| PpsI | GAGTC | 3 cut(s) | 59, 545, 652 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| PspEI | GGTNACC | 1 cut(s) | 503 |
| PspN4I | GGNNCC | 2 cut(s) | 431, 589 |
| RsaI | GTAC | 1 cut(s) | 653 |
| RsaNI | GTAC | 1 cut(s) | 652 |
| RseI | CAYNNNNRTG | 3 cut(s) | 350, 582, 612 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SaqAI | TTAA | 3 cut(s) | 159, 245, 453 |
| Sau3AI | GATC | 2 cut(s) | 288, 475 |
| SchI | GAGTC | 3 cut(s) | 59, 546, 653 |
| SduI | GDGCHC | 1 cut(s) | 309 |
| SetI | ASST | 5 cut(s) | 224, 230, 299, 309, 505 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfuI | TTCGAA | 1 cut(s) | 395 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 350, 582, 612 |
| SmlI | CTYRAG | 2 cut(s) | 302, 452 |
| SmoI | CTYRAG | 2 cut(s) | 302, 452 |
| Sse9I | AATT | 4 cut(s) | 173, 267, 364, 403 |
| SsiI | CCGC | 1 cut(s) | 508 |
| SspMI | CTAG | 1 cut(s) | 83 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| TaaI | ACNGT | 2 cut(s) | 280, 599 |
| TaqI | TCGA | 5 cut(s) | 39, 143, 265, 368, 395 |
| TasI | AATT | 4 cut(s) | 173, 267, 364, 403 |
| TatI | WGTACW | 1 cut(s) | 651 |
| Tru1I | TTAA | 3 cut(s) | 159, 245, 453 |
| Tru9I | TTAA | 3 cut(s) | 159, 245, 453 |
| TspDTI | ATGAA | 3 cut(s) | 17, 21, 335 |
| Vha464I | CTTAAG | 1 cut(s) | 452 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 423 |
| XspI | CTAG | 1 cut(s) | 83 |