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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| Acc65I | GGTACC | 1 cut(s) | 701 |
| AccB1I | GGYRCC | 2 cut(s) | 626, 701 |
| AccII | CGCG | 1 cut(s) | 453 |
| AciI | CCGC | 3 cut(s) | 145, 630, 705 |
| AclI | AACGTT | 1 cut(s) | 824 |
| AclWI | GGATC | 2 cut(s) | 335, 405 |
| AcoI | YGGCCR | 1 cut(s) | 613 |
| AcsI | RAATTY | 2 cut(s) | 212, 850 |
| AcyI | GRCGYC | 2 cut(s) | 627, 765 |
| AfaI | GTAC | 2 cut(s) | 32, 703 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 727, 731 |
| AgsI | TTSAA | 4 cut(s) | 160, 353, 664, 818 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 2 cut(s) | 346, 356 |
| AluI | AGCT | 2 cut(s) | 346, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 2 cut(s) | 76, 280 |
| AlwI | GGATC | 2 cut(s) | 335, 405 |
| AoxI | GGCC | 1 cut(s) | 613 |
| ApeKI | GCWGC | 1 cut(s) | 797 |
| ApoI | RAATTY | 2 cut(s) | 212, 850 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| Asp718I | GGTACC | 1 cut(s) | 701 |
| AspA2I | CCTAGG | 1 cut(s) | 725 |
| AspLEI | GCGC | 5 cut(s) | 455, 471, 629, 670, 785 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AsuHPI | GGTGA | 2 cut(s) | 788, 803 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| AvrII | CCTAGG | 1 cut(s) | 725 |
| BalI | TGGCCA | 1 cut(s) | 615 |
| BanI | GGYRCC | 2 cut(s) | 626, 701 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BbvI | GCAGC | 1 cut(s) | 784 |
| BccI | CCATC | 8 cut(s) | 126, 280, 654, 692, 725, 752, 773, 777 |
| BceAI | ACGGC | 1 cut(s) | 778 |
| BcoDI | GTCTC | 2 cut(s) | 76, 280 |
| BfaI | CTAG | 3 cut(s) | 122, 726, 788 |
| BfoI | RGCGCY | 4 cut(s) | 472, 630, 671, 786 |
| BisI | GCNGC | 2 cut(s) | 630, 798 |
| BlnI | CCTAGG | 1 cut(s) | 725 |
| BlsI | GCNGC | 2 cut(s) | 631, 799 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 3 cut(s) | 569, 628, 703 |
| BmsI | GCATC | 3 cut(s) | 226, 784, 822 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaHI | GRCGYC | 2 cut(s) | 627, 765 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 2 cut(s) | 414, 725 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 727, 731 |
| Bse1I | ACTGG | 2 cut(s) | 28, 34 |
| BseDI | CCNNGG | 2 cut(s) | 414, 725 |
| BseGI | GGATG | 4 cut(s) | 22, 384, 736, 744 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 727, 731 |
| BseMII | CTCAG | 2 cut(s) | 723, 850 |
| BseNI | ACTGG | 2 cut(s) | 28, 34 |
| BseXI | GCAGC | 1 cut(s) | 784 |
| Bsh1236I | CGCG | 1 cut(s) | 453 |
| BshFI | GGCC | 1 cut(s) | 615 |
| BshNI | GGYRCC | 2 cut(s) | 626, 701 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BslFI | GGGAC | 4 cut(s) | 38, 350, 725, 825 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 727, 731 |
| BsmAI | GTCTC | 2 cut(s) | 76, 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 4 cut(s) | 38, 350, 725, 825 |
| BsnI | GGCC | 1 cut(s) | 615 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 1 cut(s) | 348 |
| Bsp143I | GATC | 3 cut(s) | 228, 327, 410 |
| BspACI | CCGC | 3 cut(s) | 145, 630, 705 |
| BspANI | GGCC | 1 cut(s) | 615 |
| BspCNI | CTCAG | 2 cut(s) | 722, 849 |
| BspFNI | CGCG | 1 cut(s) | 453 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 3 cut(s) | 569, 628, 703 |
| BspPI | GGATC | 2 cut(s) | 335, 405 |
| BspT107I | GGYRCC | 2 cut(s) | 626, 701 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 2 cut(s) | 28, 34 |
| BssECI | CCNNGG | 2 cut(s) | 414, 725 |
| BssMI | GATC | 3 cut(s) | 228, 327, 410 |
| BssNI | GRCGYC | 2 cut(s) | 627, 765 |
| BssT1I | CCWWGG | 1 cut(s) | 725 |
| Bst4CI | ACNGT | 1 cut(s) | 739 |
| BstACI | GRCGYC | 2 cut(s) | 627, 765 |
| BstDEI | CTNAG | 6 cut(s) | 294, 491, 639, 709, 836, 903 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstF5I | GGATG | 4 cut(s) | 22, 384, 736, 744 |
| BstFNI | CGCG | 1 cut(s) | 453 |
| BstH2I | RGCGCY | 4 cut(s) | 472, 630, 671, 786 |
| BstHHI | GCGC | 5 cut(s) | 455, 471, 629, 670, 785 |
| BstKTI | GATC | 3 cut(s) | 231, 330, 413 |
| BstMAI | GTCTC | 2 cut(s) | 76, 280 |
| BstMBI | GATC | 3 cut(s) | 228, 327, 410 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 475, 665, 871 |
| BstUI | CGCG | 1 cut(s) | 453 |
| BstV1I | GCAGC | 1 cut(s) | 784 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 623 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| BsuRI | GGCC | 1 cut(s) | 615 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 4 cut(s) | 22, 384, 736, 744 |
| BtsIMutI | CAGTG | 1 cut(s) | 41 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 5 cut(s) | 455, 471, 629, 670, 785 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| CseI | GACGC | 2 cut(s) | 665, 754 |
| Csp6I | GTAC | 2 cut(s) | 31, 702 |
| CviAII | CATG | 5 cut(s) | 341, 617, 749, 757, 773 |
| CviJI | RGCY | 8 cut(s) | 64, 141, 346, 356, 615, 645, 724, 874 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 141, 346, 356, 615, 645, 724, 874 |
| CviQI | GTAC | 2 cut(s) | 31, 702 |
| DdeI | CTNAG | 6 cut(s) | 294, 491, 639, 709, 836, 903 |
| DinI | GGCGCC | 1 cut(s) | 628 |
| DpnI | GATC | 3 cut(s) | 230, 329, 412 |
| DpnII | GATC | 3 cut(s) | 228, 327, 410 |
| DraI | TTTAAA | 1 cut(s) | 870 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| EaeI | YGGCCR | 1 cut(s) | 613 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 1 cut(s) | 725 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoT14I | CCWWGG | 1 cut(s) | 725 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| EgeI | GGCGCC | 1 cut(s) | 628 |
| EheI | GGCGCC | 1 cut(s) | 628 |
| ErhI | CCWWGG | 1 cut(s) | 725 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 5 cut(s) | 344, 620, 752, 760, 776 |
| FaqI | GGGAC | 4 cut(s) | 38, 350, 725, 825 |
| FatI | CATG | 5 cut(s) | 340, 616, 748, 756, 772 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 2 cut(s) | 630, 798 |
| FokI | GGATG | 4 cut(s) | 29, 371, 731, 743 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 2 cut(s) | 630, 798 |
| FspBI | CTAG | 3 cut(s) | 122, 726, 788 |
| GlaI | GCGC | 5 cut(s) | 454, 470, 628, 669, 784 |
| GluI | GCNGC | 2 cut(s) | 630, 798 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 4 cut(s) | 472, 630, 671, 786 |
| HaeIII | GGCC | 1 cut(s) | 615 |
| HgaI | GACGC | 2 cut(s) | 665, 754 |
| HhaI | GCGC | 5 cut(s) | 455, 471, 629, 670, 785 |
| Hin1I | GRCGYC | 2 cut(s) | 627, 765 |
| Hin1II | CATG | 5 cut(s) | 344, 620, 752, 760, 776 |
| Hin6I | GCGC | 5 cut(s) | 453, 469, 627, 668, 783 |
| HinP1I | GCGC | 5 cut(s) | 453, 469, 627, 668, 783 |
| HincII | GTYRAC | 1 cut(s) | 581 |
| HindII | GTYRAC | 1 cut(s) | 581 |
| HinfI | GANTC | 4 cut(s) | 4, 20, 104, 256 |
| HphI | GGTGA | 2 cut(s) | 788, 803 |
| Hpy166II | GTNNAC | 2 cut(s) | 581, 715 |
| Hpy188I | TCNGA | 4 cut(s) | 184, 410, 435, 831 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 170, 341 |
| Hpy8I | GTNNAC | 2 cut(s) | 581, 715 |
| Hpy99I | CGWCG | 1 cut(s) | 588 |
| HpyAV | CCTTC | 2 cut(s) | 54, 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 739 |
| HpyCH4IV | ACGT | 3 cut(s) | 508, 583, 824 |
| HpyCH4V | TGCA | 3 cut(s) | 281, 320, 800 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 475, 665, 871 |
| HpyF3I | CTNAG | 6 cut(s) | 294, 491, 639, 709, 836, 903 |
| HpySE526I | ACGT | 3 cut(s) | 508, 583, 824 |
| Hsp92I | GRCGYC | 2 cut(s) | 627, 765 |
| Hsp92II | CATG | 5 cut(s) | 344, 620, 752, 760, 776 |
| HspAI | GCGC | 5 cut(s) | 453, 469, 627, 668, 783 |
| KasI | GGCGCC | 1 cut(s) | 626 |
| KpnI | GGTACC | 1 cut(s) | 705 |
| Kzo9I | GATC | 3 cut(s) | 228, 327, 410 |
| LmnI | GCTCC | 1 cut(s) | 30 |
| LpnPI | CCDG | 9 cut(s) | 41, 47, 70, 129, 306, 381, 498, 597, 734 |
| Lsp1109I | GCAGC | 1 cut(s) | 784 |
| LweI | GCATC | 3 cut(s) | 226, 784, 822 |
| MaeI | CTAG | 3 cut(s) | 122, 726, 788 |
| MaeII | ACGT | 3 cut(s) | 508, 583, 824 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 3 cut(s) | 230, 329, 412 |
| MboI | GATC | 3 cut(s) | 228, 327, 410 |
| MboII | GAAGA | 3 cut(s) | 59, 92, 406 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 1 cut(s) | 348 |
| MlsI | TGGCCA | 1 cut(s) | 615 |
| MluCI | AATT | 4 cut(s) | 212, 403, 442, 850 |
| MluNI | TGGCCA | 1 cut(s) | 615 |
| Mly113I | GGCGCC | 1 cut(s) | 627 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 7 cut(s) | 152, 589, 593, 619, 681, 718, 885 |
| Mox20I | TGGCCA | 1 cut(s) | 615 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 615 |
| MseI | TTAA | 3 cut(s) | 206, 807, 869 |
| MslI | CAYNNNNRTG | 6 cut(s) | 15, 389, 621, 651, 774, 777 |
| Msp20I | TGGCCA | 1 cut(s) | 615 |
| MvnI | CGCG | 1 cut(s) | 453 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 475, 665, 871 |
| NarI | GGCGCC | 1 cut(s) | 627 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 228, 327, 410 |
| NlaIII | CATG | 5 cut(s) | 344, 620, 752, 760, 776 |
| NlaIV | GGNNCC | 3 cut(s) | 569, 628, 703 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 20 |
| PflFI | GACNNNGTC | 1 cut(s) | 764 |
| PkrI | GCNGC | 2 cut(s) | 631, 799 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PluTI | GGCGCC | 1 cut(s) | 630 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| Psp1406I | AACGTT | 1 cut(s) | 824 |
| PspN4I | GGNNCC | 3 cut(s) | 569, 628, 703 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| PsyI | GACNNNGTC | 1 cut(s) | 764 |
| RsaI | GTAC | 2 cut(s) | 32, 703 |
| RsaNI | GTAC | 2 cut(s) | 31, 702 |
| RseI | CAYNNNNRTG | 6 cut(s) | 15, 389, 621, 651, 774, 777 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SaqAI | TTAA | 3 cut(s) | 206, 807, 869 |
| SatI | GCNGC | 2 cut(s) | 630, 798 |
| Sau3AI | GATC | 3 cut(s) | 228, 327, 410 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| SduI | GDGCHC | 1 cut(s) | 348 |
| SfaNI | GCATC | 3 cut(s) | 226, 784, 822 |
| SfoI | GGCGCC | 1 cut(s) | 628 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 15, 389, 621, 651, 774, 777 |
| Sse9I | AATT | 4 cut(s) | 212, 403, 442, 850 |
| SsiI | CCGC | 3 cut(s) | 145, 630, 705 |
| SspDI | GGCGCC | 1 cut(s) | 626 |
| SspMI | CTAG | 3 cut(s) | 122, 726, 788 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| StyI | CCWWGG | 1 cut(s) | 725 |
| TaaI | ACNGT | 1 cut(s) | 739 |
| TaiI | ACGT | 3 cut(s) | 511, 586, 827 |
| TaqI | TCGA | 3 cut(s) | 78, 304, 586 |
| TasI | AATT | 4 cut(s) | 212, 403, 442, 850 |
| TauI | GCSGC | 1 cut(s) | 632 |
| TfiI | GAWTC | 1 cut(s) | 20 |
| Tru1I | TTAA | 3 cut(s) | 206, 807, 869 |
| Tru9I | TTAA | 3 cut(s) | 206, 807, 869 |
| TscAI | CASTG | 1 cut(s) | 41 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 1 cut(s) | 797 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 5 cut(s) | 56, 60, 224, 329, 374 |
| TspGWI | ACGGA | 3 cut(s) | 340, 403, 580 |
| TspRI | CASTG | 1 cut(s) | 41 |
| Tth111I | GACNNNGTC | 1 cut(s) | 764 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XapI | RAATTY | 2 cut(s) | 212, 850 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 728, 776 |
| XmaJI | CCTAGG | 1 cut(s) | 725 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 122, 726, 788 |