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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 310 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 521 |
| AccII | CGCG | 1 cut(s) | 300 |
| AccIII | TCCGGA | 1 cut(s) | 76 |
| AciI | CCGC | 2 cut(s) | 246, 298 |
| AclWI | GGATC | 2 cut(s) | 367, 513 |
| AcoI | YGGCCR | 1 cut(s) | 256 |
| AcyI | GRCGYC | 1 cut(s) | 270 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 107, 178, 521 |
| AflIII | ACRYGT | 1 cut(s) | 226 |
| AluBI | AGCT | 1 cut(s) | 11 |
| AluI | AGCT | 1 cut(s) | 11 |
| AlwI | GGATC | 2 cut(s) | 367, 513 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 521 |
| Aor13HI | TCCGGA | 1 cut(s) | 76 |
| AoxI | GGCC | 1 cut(s) | 256 |
| AspLEI | GCGC | 1 cut(s) | 302 |
| AsuHPI | GGTGA | 1 cut(s) | 278 |
| AxyI | CCTNAGG | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 310 |
| BccI | CCATC | 1 cut(s) | 464 |
| BfaI | CTAG | 2 cut(s) | 51, 366 |
| BfmI | CTRYAG | 1 cut(s) | 88 |
| BmiI | GGNNCC | 5 cut(s) | 64, 212, 250, 312, 327 |
| BsaBI | GATNNNNATC | 3 cut(s) | 358, 474, 480 |
| BsaHI | GRCGYC | 1 cut(s) | 270 |
| BsaJI | CCNNGG | 3 cut(s) | 57, 214, 259 |
| BsaWI | WCCGGW | 1 cut(s) | 76 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 107, 178, 521 |
| Bse1I | ACTGG | 1 cut(s) | 526 |
| Bse21I | CCTNAGG | 1 cut(s) | 102 |
| Bse8I | GATNNNNATC | 3 cut(s) | 358, 474, 480 |
| BseAI | TCCGGA | 1 cut(s) | 76 |
| BseDI | CCNNGG | 3 cut(s) | 57, 214, 259 |
| BseJI | GATNNNNATC | 3 cut(s) | 358, 474, 480 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 107, 178, 521 |
| BseNI | ACTGG | 1 cut(s) | 526 |
| Bsh1236I | CGCG | 1 cut(s) | 300 |
| BshFI | GGCC | 1 cut(s) | 258 |
| BshNI | GGYRCC | 1 cut(s) | 310 |
| BsiSI | CCGG | 1 cut(s) | 77 |
| BslFI | GGGAC | 2 cut(s) | 152, 379 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 107, 178, 521 |
| BsmFI | GGGAC | 2 cut(s) | 152, 379 |
| BsnI | GGCC | 1 cut(s) | 258 |
| Bsp13I | TCCGGA | 1 cut(s) | 76 |
| Bsp143I | GATC | 6 cut(s) | 317, 359, 463, 475, 481, 505 |
| Bsp19I | CCATGG | 1 cut(s) | 259 |
| BspACI | CCGC | 2 cut(s) | 246, 298 |
| BspANI | GGCC | 1 cut(s) | 258 |
| BspCNI | CTCAG | 1 cut(s) | 4 |
| BspEI | TCCGGA | 1 cut(s) | 76 |
| BspFNI | CGCG | 1 cut(s) | 300 |
| BspLI | GGNNCC | 5 cut(s) | 64, 212, 250, 312, 327 |
| BspPI | GGATC | 2 cut(s) | 367, 513 |
| BspT107I | GGYRCC | 1 cut(s) | 310 |
| BsrI | ACTGG | 1 cut(s) | 526 |
| BssECI | CCNNGG | 3 cut(s) | 57, 214, 259 |
| BssMI | GATC | 6 cut(s) | 317, 359, 463, 475, 481, 505 |
| BssNI | GRCGYC | 1 cut(s) | 270 |
| BssT1I | CCWWGG | 1 cut(s) | 259 |
| Bst4CI | ACNGT | 1 cut(s) | 215 |
| Bst6I | CTCTTC | 1 cut(s) | 227 |
| BstACI | GRCGYC | 1 cut(s) | 270 |
| BstDEI | CTNAG | 4 cut(s) | 12, 102, 129, 485 |
| BstDSI | CCRYGG | 3 cut(s) | 57, 214, 259 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 105 |
| BstFNI | CGCG | 1 cut(s) | 300 |
| BstHHI | GCGC | 1 cut(s) | 302 |
| BstKTI | GATC | 6 cut(s) | 320, 362, 466, 478, 484, 508 |
| BstMBI | GATC | 6 cut(s) | 317, 359, 463, 475, 481, 505 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 389, 440 |
| BstNSI | RCATGY | 2 cut(s) | 230, 387 |
| BstSFI | CTRYAG | 1 cut(s) | 88 |
| BstUI | CGCG | 1 cut(s) | 300 |
| Bsu36I | CCTNAGG | 1 cut(s) | 102 |
| BsuRI | GGCC | 1 cut(s) | 258 |
| BtgI | CCRYGG | 3 cut(s) | 57, 214, 259 |
| CaiI | CAGNNNCTG | 1 cut(s) | 521 |
| CfoI | GCGC | 1 cut(s) | 302 |
| CseI | GACGC | 3 cut(s) | 120, 278, 381 |
| CviAII | CATG | 4 cut(s) | 227, 260, 384, 451 |
| CviJI | RGCY | 4 cut(s) | 11, 251, 258, 328 |
| CviKI_1 | RGCY | 4 cut(s) | 11, 251, 258, 328 |
| DdeI | CTNAG | 4 cut(s) | 12, 102, 129, 485 |
| DpnI | GATC | 6 cut(s) | 319, 361, 465, 477, 483, 507 |
| DpnII | GATC | 6 cut(s) | 317, 359, 463, 475, 481, 505 |
| EaeI | YGGCCR | 1 cut(s) | 256 |
| Eam1104I | CTCTTC | 1 cut(s) | 227 |
| EarI | CTCTTC | 1 cut(s) | 227 |
| EciI | GGCGGA | 1 cut(s) | 261 |
| Eco130I | CCWWGG | 1 cut(s) | 259 |
| Eco81I | CCTNAGG | 1 cut(s) | 102 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 105 |
| EcoT14I | CCWWGG | 1 cut(s) | 259 |
| ErhI | CCWWGG | 1 cut(s) | 259 |
| FaeI | CATG | 4 cut(s) | 230, 263, 387, 454 |
| FaqI | GGGAC | 2 cut(s) | 152, 379 |
| FatI | CATG | 4 cut(s) | 226, 259, 383, 450 |
| FspBI | CTAG | 2 cut(s) | 51, 366 |
| GlaI | GCGC | 1 cut(s) | 301 |
| HaeIII | GGCC | 1 cut(s) | 258 |
| HapII | CCGG | 1 cut(s) | 77 |
| HgaI | GACGC | 3 cut(s) | 120, 278, 381 |
| HhaI | GCGC | 1 cut(s) | 302 |
| Hin1I | GRCGYC | 1 cut(s) | 270 |
| Hin1II | CATG | 4 cut(s) | 230, 263, 387, 454 |
| Hin6I | GCGC | 1 cut(s) | 300 |
| HinP1I | GCGC | 1 cut(s) | 300 |
| HincII | GTYRAC | 1 cut(s) | 224 |
| HindII | GTYRAC | 1 cut(s) | 224 |
| HinfI | GANTC | 1 cut(s) | 80 |
| HpaII | CCGG | 1 cut(s) | 77 |
| HphI | GGTGA | 1 cut(s) | 278 |
| Hpy166II | GTNNAC | 1 cut(s) | 224 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 428, 467, 479, 509 |
| Hpy8I | GTNNAC | 1 cut(s) | 224 |
| HpyAV | CCTTC | 2 cut(s) | 176, 262 |
| HpyCH4III | ACNGT | 1 cut(s) | 215 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 389, 440 |
| HpyF3I | CTNAG | 4 cut(s) | 12, 102, 129, 485 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92I | GRCGYC | 1 cut(s) | 270 |
| Hsp92II | CATG | 4 cut(s) | 230, 263, 387, 454 |
| HspAI | GCGC | 1 cut(s) | 300 |
| Kpn2I | TCCGGA | 1 cut(s) | 76 |
| Kzo9I | GATC | 6 cut(s) | 317, 359, 463, 475, 481, 505 |
| LmnI | GCTCC | 3 cut(s) | 118, 248, 325 |
| LpnPI | CCDG | 5 cut(s) | 90, 141, 342, 507, 528 |
| MaeI | CTAG | 2 cut(s) | 51, 366 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MaeIII | GTNAC | 2 cut(s) | 92, 266 |
| MalI | GATC | 6 cut(s) | 319, 361, 465, 477, 483, 507 |
| MboI | GATC | 6 cut(s) | 317, 359, 463, 475, 481, 505 |
| MboII | GAAGA | 3 cut(s) | 49, 244, 473 |
| MluCI | AATT | 2 cut(s) | 142, 445 |
| MlyI | GAGTC | 1 cut(s) | 89 |
| MnlI | CCTC | 7 cut(s) | 101, 172, 192, 212, 236, 324, 433 |
| MroI | TCCGGA | 1 cut(s) | 76 |
| MseI | TTAA | 1 cut(s) | 535 |
| MslI | CAYNNNNRTG | 1 cut(s) | 264 |
| MspI | CCGG | 1 cut(s) | 77 |
| MvnI | CGCG | 1 cut(s) | 300 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 389, 440 |
| NcoI | CCATGG | 1 cut(s) | 259 |
| NdeII | GATC | 6 cut(s) | 317, 359, 463, 475, 481, 505 |
| NlaIII | CATG | 4 cut(s) | 230, 263, 387, 454 |
| NlaIV | GGNNCC | 5 cut(s) | 64, 212, 250, 312, 327 |
| NmuCI | GTSAC | 2 cut(s) | 92, 266 |
| NspI | RCATGY | 2 cut(s) | 230, 387 |
| PciI | ACATGT | 1 cut(s) | 226 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 118 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 521 |
| PleI | GAGTC | 1 cut(s) | 88 |
| PpsI | GAGTC | 1 cut(s) | 88 |
| PscI | ACATGT | 1 cut(s) | 226 |
| PspN4I | GGNNCC | 5 cut(s) | 64, 212, 250, 312, 327 |
| PstNI | CAGNNNCTG | 1 cut(s) | 521 |
| RseI | CAYNNNNRTG | 1 cut(s) | 264 |
| SaqAI | TTAA | 1 cut(s) | 535 |
| Sau3AI | GATC | 6 cut(s) | 317, 359, 463, 475, 481, 505 |
| SchI | GAGTC | 1 cut(s) | 89 |
| SetI | ASST | 4 cut(s) | 9, 13, 223, 312 |
| SfcI | CTRYAG | 1 cut(s) | 88 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 264 |
| Sse9I | AATT | 2 cut(s) | 142, 445 |
| SsiI | CCGC | 2 cut(s) | 246, 298 |
| SspMI | CTAG | 2 cut(s) | 51, 366 |
| StyI | CCWWGG | 1 cut(s) | 259 |
| TaaI | ACNGT | 1 cut(s) | 215 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TaqI | TCGA | 3 cut(s) | 316, 352, 480 |
| TasI | AATT | 2 cut(s) | 142, 445 |
| Tru1I | TTAA | 1 cut(s) | 535 |
| Tru9I | TTAA | 1 cut(s) | 535 |
| TseFI | GTSAC | 2 cut(s) | 92, 266 |
| Tsp45I | GTSAC | 2 cut(s) | 92, 266 |
| TspDTI | ATGAA | 2 cut(s) | 17, 150 |
| TspGWI | ACGGA | 1 cut(s) | 223 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 521 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 105 |
| XceI | RCATGY | 2 cut(s) | 230, 387 |
| XspI | CTAG | 2 cut(s) | 51, 366 |