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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 629 |
| AccB1I | GGYRCC | 2 cut(s) | 584, 742 |
| AccIII | TCCGGA | 1 cut(s) | 549 |
| AciI | CCGC | 3 cut(s) | 261, 663, 884 |
| AclWI | GGATC | 2 cut(s) | 451, 521 |
| AcoI | YGGCCR | 1 cut(s) | 729 |
| AcsI | RAATTY | 1 cut(s) | 328 |
| AcyI | GRCGYC | 2 cut(s) | 585, 743 |
| AdeI | CACNNNGTG | 1 cut(s) | 924 |
| AfaI | GTAC | 1 cut(s) | 148 |
| AfeI | AGCGCT | 1 cut(s) | 785 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 580 |
| AgsI | TTSAA | 2 cut(s) | 276, 790 |
| AjiI | CACGTC | 1 cut(s) | 36 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 188, 220 |
| AluBI | AGCT | 6 cut(s) | 55, 61, 462, 472, 865, 916 |
| AluI | AGCT | 6 cut(s) | 55, 61, 462, 472, 865, 916 |
| Alw21I | GWGCWC | 2 cut(s) | 464, 867 |
| Alw26I | GTCTC | 2 cut(s) | 192, 396 |
| AlwI | GGATC | 2 cut(s) | 451, 521 |
| Ama87I | CYCGRG | 1 cut(s) | 19 |
| Aor13HI | TCCGGA | 1 cut(s) | 549 |
| Aor51HI | AGCGCT | 1 cut(s) | 785 |
| AoxI | GGCC | 1 cut(s) | 729 |
| ApoI | RAATTY | 1 cut(s) | 328 |
| AseI | ATTAAT | 1 cut(s) | 314 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 305 |
| AspLEI | GCGC | 3 cut(s) | 587, 745, 786 |
| AspS9I | GGNCC | 1 cut(s) | 631 |
| AsuHPI | GGTGA | 2 cut(s) | 111, 873 |
| AvaI | CYCGRG | 1 cut(s) | 19 |
| AvaII | GGWCC | 1 cut(s) | 631 |
| BaeGI | GKGCMC | 1 cut(s) | 852 |
| BalI | TGGCCA | 1 cut(s) | 731 |
| BanI | GGYRCC | 2 cut(s) | 584, 742 |
| BanII | GRGCYC | 2 cut(s) | 464, 867 |
| BauI | CACGAG | 1 cut(s) | 866 |
| BbsI | GAAGAC | 2 cut(s) | 173, 376 |
| Bbv12I | GWGCWC | 2 cut(s) | 464, 867 |
| BccI | CCATC | 3 cut(s) | 242, 396, 434 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 415, 449 |
| BciVI | GTATCC | 1 cut(s) | 606 |
| BclI | TGATCA | 1 cut(s) | 840 |
| BcoDI | GTCTC | 2 cut(s) | 192, 396 |
| BfaI | CTAG | 4 cut(s) | 7, 26, 238, 952 |
| BfmI | CTRYAG | 1 cut(s) | 291 |
| BfoI | RGCGCY | 3 cut(s) | 588, 746, 787 |
| BfuI | GTATCC | 1 cut(s) | 606 |
| BglII | AGATCT | 1 cut(s) | 282 |
| Bme18I | GGWCC | 1 cut(s) | 631 |
| BmeT110I | CYCGRG | 1 cut(s) | 19 |
| BmgBI | CACGTC | 1 cut(s) | 36 |
| BmgT120I | GGNCC | 1 cut(s) | 631 |
| BmiI | GGNNCC | 2 cut(s) | 586, 744 |
| BmsI | GCATC | 2 cut(s) | 501, 762 |
| BpiI | GAAGAC | 2 cut(s) | 173, 376 |
| BpmI | CTGGAG | 1 cut(s) | 127 |
| BpuEI | CTTGAG | 1 cut(s) | 41 |
| Bsa29I | ATCGAT | 1 cut(s) | 425 |
| BsaHI | GRCGYC | 2 cut(s) | 585, 743 |
| BsaI | GGTCTC | 1 cut(s) | 192 |
| BsaJI | CCNNGG | 1 cut(s) | 530 |
| BsaWI | WCCGGW | 1 cut(s) | 549 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 580 |
| Bse1I | ACTGG | 1 cut(s) | 144 |
| BseAI | TCCGGA | 1 cut(s) | 549 |
| BseCI | ATCGAT | 1 cut(s) | 425 |
| BseDI | CCNNGG | 1 cut(s) | 530 |
| BseGI | GGATG | 3 cut(s) | 110, 138, 500 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 580 |
| BseNI | ACTGG | 1 cut(s) | 144 |
| BseSI | GKGCMC | 1 cut(s) | 852 |
| BshFI | GGCC | 1 cut(s) | 731 |
| BshNI | GGYRCC | 2 cut(s) | 584, 742 |
| BshVI | ATCGAT | 1 cut(s) | 425 |
| BsiHKAI | GWGCWC | 2 cut(s) | 464, 867 |
| BsiHKCI | CYCGRG | 1 cut(s) | 19 |
| BsiSI | CCGG | 1 cut(s) | 550 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 580 |
| BsmAI | GTCTC | 2 cut(s) | 192, 396 |
| BsmBI | CGTCTC | 1 cut(s) | 396 |
| BsnI | GGCC | 1 cut(s) | 731 |
| Bso31I | GGTCTC | 1 cut(s) | 192 |
| BsoBI | CYCGRG | 1 cut(s) | 19 |
| Bsp1286I | GDGCHC | 3 cut(s) | 464, 852, 867 |
| Bsp13I | TCCGGA | 1 cut(s) | 549 |
| Bsp143I | GATC | 5 cut(s) | 282, 443, 526, 840, 936 |
| BspACI | CCGC | 3 cut(s) | 261, 663, 884 |
| BspANI | GGCC | 1 cut(s) | 731 |
| BspDI | ATCGAT | 1 cut(s) | 425 |
| BspEI | TCCGGA | 1 cut(s) | 549 |
| BspHI | TCATGA | 1 cut(s) | 456 |
| BspLI | GGNNCC | 2 cut(s) | 586, 744 |
| BspPI | GGATC | 2 cut(s) | 451, 521 |
| BspT107I | GGYRCC | 2 cut(s) | 584, 742 |
| BspTNI | GGTCTC | 1 cut(s) | 192 |
| BsrI | ACTGG | 1 cut(s) | 144 |
| BssECI | CCNNGG | 1 cut(s) | 530 |
| BssMI | GATC | 5 cut(s) | 282, 443, 526, 840, 936 |
| BssNI | GRCGYC | 2 cut(s) | 585, 743 |
| BssSI | CACGAG | 1 cut(s) | 866 |
| Bst2BI | CACGAG | 1 cut(s) | 866 |
| Bst4CI | ACNGT | 1 cut(s) | 45 |
| BstACI | GRCGYC | 2 cut(s) | 585, 743 |
| BstC8I | GCNNGC | 1 cut(s) | 53 |
| BstDEI | CTNAG | 5 cut(s) | 84, 410, 607, 688, 755 |
| BstDSI | CCRYGG | 1 cut(s) | 530 |
| BstF5I | GGATG | 3 cut(s) | 110, 138, 500 |
| BstH2I | RGCGCY | 3 cut(s) | 588, 746, 787 |
| BstHHI | GCGC | 3 cut(s) | 587, 745, 786 |
| BstKTI | GATC | 5 cut(s) | 285, 446, 529, 843, 939 |
| BstMAI | GTCTC | 2 cut(s) | 192, 396 |
| BstMBI | GATC | 5 cut(s) | 282, 443, 526, 840, 936 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 67, 76, 591, 781, 892, 913 |
| BstSFI | CTRYAG | 1 cut(s) | 291 |
| BstSLI | GKGCMC | 1 cut(s) | 852 |
| BstV2I | GAAGAC | 2 cut(s) | 173, 376 |
| BstX2I | RGATCY | 2 cut(s) | 282, 526 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 739 |
| BstYI | RGATCY | 2 cut(s) | 282, 526 |
| Bsu15I | ATCGAT | 1 cut(s) | 425 |
| BsuI | GTATCC | 1 cut(s) | 606 |
| BsuRI | GGCC | 1 cut(s) | 731 |
| BsuTUI | ATCGAT | 1 cut(s) | 425 |
| BtgI | CCRYGG | 1 cut(s) | 530 |
| BtrI | CACGTC | 1 cut(s) | 36 |
| BtsCI | GGATG | 3 cut(s) | 110, 138, 500 |
| Cac8I | GCNNGC | 1 cut(s) | 53 |
| CciI | TCATGA | 1 cut(s) | 456 |
| CfoI | GCGC | 3 cut(s) | 587, 745, 786 |
| Cfr13I | GGNCC | 1 cut(s) | 631 |
| ClaI | ATCGAT | 1 cut(s) | 425 |
| Csp6I | GTAC | 1 cut(s) | 147 |
| CviAII | CATG | 3 cut(s) | 225, 457, 733 |
| CviQI | GTAC | 1 cut(s) | 147 |
| DdeI | CTNAG | 5 cut(s) | 84, 410, 607, 688, 755 |
| DinI | GGCGCC | 2 cut(s) | 586, 744 |
| DpnI | GATC | 5 cut(s) | 284, 445, 528, 842, 938 |
| DpnII | GATC | 5 cut(s) | 282, 443, 526, 840, 936 |
| DraI | TTTAAA | 1 cut(s) | 780 |
| DraIII | CACNNNGTG | 1 cut(s) | 924 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 629 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 629 |
| EaeI | YGGCCR | 1 cut(s) | 729 |
| Ecl136II | GAGCTC | 2 cut(s) | 462, 865 |
| Eco24I | GRGCYC | 2 cut(s) | 464, 867 |
| Eco31I | GGTCTC | 1 cut(s) | 192 |
| Eco47I | GGWCC | 1 cut(s) | 631 |
| Eco47III | AGCGCT | 1 cut(s) | 785 |
| Eco53kI | GAGCTC | 2 cut(s) | 462, 865 |
| Eco88I | CYCGRG | 1 cut(s) | 19 |
| EcoICRI | GAGCTC | 2 cut(s) | 462, 865 |
| EcoRI | GAATTC | 1 cut(s) | 328 |
| EcoT38I | GRGCYC | 2 cut(s) | 464, 867 |
| EgeI | GGCGCC | 2 cut(s) | 586, 744 |
| EheI | GGCGCC | 2 cut(s) | 586, 744 |
| Esp3I | CGTCTC | 1 cut(s) | 396 |
| FaeI | CATG | 3 cut(s) | 228, 460, 736 |
| FatI | CATG | 3 cut(s) | 224, 456, 732 |
| FauNDI | CATATG | 1 cut(s) | 128 |
| FbaI | TGATCA | 1 cut(s) | 840 |
| FokI | GGATG | 3 cut(s) | 97, 145, 487 |
| FriOI | GRGCYC | 2 cut(s) | 464, 867 |
| FspBI | CTAG | 4 cut(s) | 7, 26, 238, 952 |
| GlaI | GCGC | 3 cut(s) | 586, 744, 785 |
| GsuI | CTGGAG | 1 cut(s) | 127 |
| HaeII | RGCGCY | 3 cut(s) | 588, 746, 787 |
| HaeIII | GGCC | 1 cut(s) | 731 |
| HapII | CCGG | 1 cut(s) | 550 |
| HhaI | GCGC | 3 cut(s) | 587, 745, 786 |
| Hin1I | GRCGYC | 2 cut(s) | 585, 743 |
| Hin1II | CATG | 3 cut(s) | 228, 460, 736 |
| Hin6I | GCGC | 3 cut(s) | 585, 743, 784 |
| HinP1I | GCGC | 3 cut(s) | 585, 743, 784 |
| HincII | GTYRAC | 1 cut(s) | 697 |
| HindII | GTYRAC | 1 cut(s) | 697 |
| HindIII | AAGCTT | 1 cut(s) | 59 |
| HinfI | GANTC | 9 cut(s) | 2, 15, 136, 220, 372, 422, 553, 684, 759 |
| HpaII | CCGG | 1 cut(s) | 550 |
| HphI | GGTGA | 2 cut(s) | 111, 873 |
| Hpy166II | GTNNAC | 1 cut(s) | 697 |
| Hpy188I | TCNGA | 2 cut(s) | 282, 840 |
| Hpy188III | TCNNGA | 9 cut(s) | 19, 232, 286, 457, 524, 550, 868, 940, 952 |
| Hpy8I | GTNNAC | 1 cut(s) | 697 |
| HpyAV | CCTTC | 1 cut(s) | 393 |
| HpyCH4III | ACNGT | 1 cut(s) | 45 |
| HpyCH4IV | ACGT | 4 cut(s) | 35, 212, 624, 699 |
| HpyCH4V | TGCA | 1 cut(s) | 436 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 67, 76, 591, 781, 892, 913 |
| HpyF3I | CTNAG | 5 cut(s) | 84, 410, 607, 688, 755 |
| HpySE526I | ACGT | 4 cut(s) | 35, 212, 624, 699 |
| Hsp92I | GRCGYC | 2 cut(s) | 585, 743 |
| Hsp92II | CATG | 3 cut(s) | 228, 460, 736 |
| HspAI | GCGC | 3 cut(s) | 585, 743, 784 |
| KasI | GGCGCC | 2 cut(s) | 584, 742 |
| Kpn2I | TCCGGA | 1 cut(s) | 549 |
| Ksp22I | TGATCA | 1 cut(s) | 840 |
| Kzo9I | GATC | 5 cut(s) | 282, 443, 526, 840, 936 |
| LmnI | GCTCC | 2 cut(s) | 146, 469 |
| LpnPI | CCDG | 6 cut(s) | 157, 245, 434, 563, 614, 713 |
| LweI | GCATC | 2 cut(s) | 501, 762 |
| MaeI | CTAG | 4 cut(s) | 7, 26, 238, 952 |
| MaeII | ACGT | 4 cut(s) | 35, 212, 624, 699 |
| MaeIII | GTNAC | 3 cut(s) | 217, 658, 879 |
| MalI | GATC | 5 cut(s) | 284, 445, 528, 842, 938 |
| MboI | GATC | 5 cut(s) | 282, 443, 526, 840, 936 |
| MboII | GAAGA | 8 cut(s) | 175, 178, 208, 381, 522, 883, 946, 955 |
| MflI | RGATCY | 2 cut(s) | 282, 526 |
| MhlI | GDGCHC | 3 cut(s) | 464, 852, 867 |
| MlsI | TGGCCA | 1 cut(s) | 731 |
| MluCI | AATT | 5 cut(s) | 315, 328, 519, 558, 875 |
| MluNI | TGGCCA | 1 cut(s) | 731 |
| Mly113I | GGCGCC | 2 cut(s) | 585, 743 |
| MlyI | GAGTC | 3 cut(s) | 214, 366, 768 |
| MnlI | CCTC | 8 cut(s) | 81, 268, 574, 685, 705, 709, 735, 805 |
| Mox20I | TGGCCA | 1 cut(s) | 731 |
| MroI | TCCGGA | 1 cut(s) | 549 |
| MroXI | GAANNNNTTC | 1 cut(s) | 305 |
| MscI | TGGCCA | 1 cut(s) | 731 |
| MseI | TTAA | 3 cut(s) | 314, 322, 779 |
| MslI | CAYNNNNRTG | 5 cut(s) | 115, 131, 505, 737, 767 |
| Msp20I | TGGCCA | 1 cut(s) | 731 |
| MspI | CCGG | 1 cut(s) | 550 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 67, 76, 591, 781, 892, 913 |
| NarI | GGCGCC | 2 cut(s) | 585, 743 |
| NdeI | CATATG | 1 cut(s) | 128 |
| NdeII | GATC | 5 cut(s) | 282, 443, 526, 840, 936 |
| NlaIII | CATG | 3 cut(s) | 228, 460, 736 |
| NlaIV | GGNNCC | 2 cut(s) | 586, 744 |
| NmuCI | GTSAC | 2 cut(s) | 217, 879 |
| PaeR7I | CTCGAG | 1 cut(s) | 19 |
| PagI | TCATGA | 1 cut(s) | 456 |
| PdmI | GAANNNNTTC | 1 cut(s) | 305 |
| PfeI | GAWTC | 6 cut(s) | 2, 15, 136, 422, 553, 684 |
| PleI | GAGTC | 3 cut(s) | 214, 366, 767 |
| PluTI | GGCGCC | 2 cut(s) | 588, 746 |
| PpsI | GAGTC | 3 cut(s) | 214, 366, 767 |
| PshBI | ATTAAT | 1 cut(s) | 314 |
| Psp124BI | GAGCTC | 2 cut(s) | 464, 867 |
| PspN4I | GGNNCC | 2 cut(s) | 586, 744 |
| PspPI | GGNCC | 1 cut(s) | 631 |
| PsuI | RGATCY | 2 cut(s) | 282, 526 |
| RsaI | GTAC | 1 cut(s) | 148 |
| RsaNI | GTAC | 1 cut(s) | 147 |
| RseI | CAYNNNNRTG | 5 cut(s) | 115, 131, 505, 737, 767 |
| SacI | GAGCTC | 2 cut(s) | 464, 867 |
| SaqAI | TTAA | 3 cut(s) | 314, 322, 779 |
| Sau3AI | GATC | 5 cut(s) | 282, 443, 526, 840, 936 |
| Sau96I | GGNCC | 1 cut(s) | 631 |
| SchI | GAGTC | 3 cut(s) | 214, 366, 768 |
| SduI | GDGCHC | 3 cut(s) | 464, 852, 867 |
| SfaNI | GCATC | 2 cut(s) | 501, 762 |
| SfcI | CTRYAG | 1 cut(s) | 291 |
| SfoI | GGCGCC | 2 cut(s) | 586, 744 |
| Sfr274I | CTCGAG | 1 cut(s) | 19 |
| SinI | GGWCC | 1 cut(s) | 631 |
| SlaI | CTCGAG | 1 cut(s) | 19 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 115, 131, 505, 737, 767 |
| SmlI | CTYRAG | 2 cut(s) | 19, 56 |
| SmoI | CTYRAG | 2 cut(s) | 19, 56 |
| Sse9I | AATT | 5 cut(s) | 315, 328, 519, 558, 875 |
| SsiI | CCGC | 3 cut(s) | 261, 663, 884 |
| SspDI | GGCGCC | 2 cut(s) | 584, 742 |
| SspMI | CTAG | 4 cut(s) | 7, 26, 238, 952 |
| SstI | GAGCTC | 2 cut(s) | 464, 867 |
| TaaI | ACNGT | 1 cut(s) | 45 |
| TaiI | ACGT | 4 cut(s) | 38, 215, 627, 702 |
| TaqI | TCGA | 6 cut(s) | 20, 194, 420, 425, 523, 825 |
| TasI | AATT | 5 cut(s) | 315, 328, 519, 558, 875 |
| TfiI | GAWTC | 6 cut(s) | 2, 15, 136, 422, 553, 684 |
| Tru1I | TTAA | 3 cut(s) | 314, 322, 779 |
| Tru9I | TTAA | 3 cut(s) | 314, 322, 779 |
| TseFI | GTSAC | 2 cut(s) | 217, 879 |
| Tsp45I | GTSAC | 2 cut(s) | 217, 879 |
| TspDTI | ATGAA | 3 cut(s) | 172, 176, 445 |
| TspGWI | ACGGA | 4 cut(s) | 205, 313, 519, 696 |
| VpaK11BI | GGWCC | 1 cut(s) | 631 |
| VspI | ATTAAT | 1 cut(s) | 314 |
| XapI | RAATTY | 1 cut(s) | 328 |
| XbaI | TCTAGA | 1 cut(s) | 951 |
| XhoI | CTCGAG | 1 cut(s) | 19 |
| XmnI | GAANNNNTTC | 1 cut(s) | 305 |
| XspI | CTAG | 4 cut(s) | 7, 26, 238, 952 |