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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AccB1I | GGYRCC | 1 cut(s) | 684 |
| AclWI | GGATC | 1 cut(s) | 621 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 680 |
| AgsI | TTSAA | 3 cut(s) | 296, 376, 624 |
| AjnI | CCWGG | 1 cut(s) | 105 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 288, 320, 650, 682 |
| AleI | CACNNNNGTG | 1 cut(s) | 366 |
| AluBI | AGCT | 5 cut(s) | 48, 155, 161, 562, 584 |
| AluI | AGCT | 5 cut(s) | 48, 155, 161, 562, 584 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 1 cut(s) | 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanI | GGYRCC | 1 cut(s) | 684 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| BccI | CCATC | 3 cut(s) | 215, 342, 496 |
| BciT130I | CCWGG | 1 cut(s) | 107 |
| BciVI | GTATCC | 2 cut(s) | 103, 706 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 6 cut(s) | 45, 126, 158, 338, 537, 729 |
| BfuI | GTATCC | 2 cut(s) | 103, 706 |
| Bme1390I | CCNGG | 1 cut(s) | 107 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmiI | GGNNCC | 2 cut(s) | 654, 686 |
| BmrFI | CCNGG | 1 cut(s) | 107 |
| BmsI | GCATC | 1 cut(s) | 552 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 680 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 107 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 724 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 684 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp143I | GATC | 2 cut(s) | 444, 626 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 2 cut(s) | 654, 686 |
| BspPI | GGATC | 1 cut(s) | 621 |
| BspT107I | GGYRCC | 1 cut(s) | 684 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 2 cut(s) | 444, 626 |
| Bst2UI | CCWGG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 2 cut(s) | 675, 707 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 678 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 724 |
| BstKTI | GATC | 2 cut(s) | 447, 629 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 2 cut(s) | 444, 626 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| BstNI | CCWGG | 1 cut(s) | 107 |
| BstSCI | CCNGG | 1 cut(s) | 105 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| BsuI | GTATCC | 2 cut(s) | 103, 706 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 724 |
| BtsI | GCAGTG | 1 cut(s) | 186 |
| BtsIMutI | CAGTG | 2 cut(s) | 186, 439 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CseI | GACGC | 1 cut(s) | 549 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 612, 647 |
| CviAII | CATG | 2 cut(s) | 131, 557 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 675, 707 |
| DpnI | GATC | 2 cut(s) | 446, 628 |
| DpnII | GATC | 2 cut(s) | 444, 626 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 678 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 105 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 2 cut(s) | 134, 560 |
| FatI | CATG | 2 cut(s) | 130, 556 |
| FokI | GGATG | 3 cut(s) | 197, 245, 711 |
| FspBI | CTAG | 6 cut(s) | 45, 126, 158, 338, 537, 729 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HgaI | GACGC | 1 cut(s) | 549 |
| Hin1II | CATG | 2 cut(s) | 134, 560 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 236, 320, 472 |
| Hpy166II | GTNNAC | 1 cut(s) | 79 |
| Hpy188I | TCNGA | 1 cut(s) | 652 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 71, 119, 332, 386, 557, 624, 720 |
| Hpy8I | GTNNAC | 1 cut(s) | 79 |
| HpyAV | CCTTC | 2 cut(s) | 270, 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 312, 579 |
| HpyCH4V | TGCA | 1 cut(s) | 497 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 675, 707 |
| HpySE526I | ACGT | 2 cut(s) | 312, 579 |
| Hsp92II | CATG | 2 cut(s) | 134, 560 |
| Kzo9I | GATC | 2 cut(s) | 444, 626 |
| LmnI | GCTCC | 1 cut(s) | 246 |
| LpnPI | CCDG | 9 cut(s) | 23, 36, 46, 92, 119, 257, 286, 345, 705 |
| LweI | GCATC | 1 cut(s) | 552 |
| MaeI | CTAG | 6 cut(s) | 45, 126, 158, 338, 537, 729 |
| MaeII | ACGT | 2 cut(s) | 312, 579 |
| MaeIII | GTNAC | 2 cut(s) | 5, 317 |
| MalI | GATC | 2 cut(s) | 446, 628 |
| MboI | GATC | 2 cut(s) | 444, 626 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 481, 622 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MluCI | AATT | 5 cut(s) | 17, 428, 522, 619, 658 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 3 cut(s) | 181, 368, 674 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 366, 605 |
| MspR9I | CCNGG | 1 cut(s) | 107 |
| MvaI | CCWGG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| NdeII | GATC | 2 cut(s) | 444, 626 |
| NlaIII | CATG | 2 cut(s) | 134, 560 |
| NlaIV | GGNNCC | 2 cut(s) | 654, 686 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| OliI | CACNNNNGTG | 1 cut(s) | 366 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| Psp6I | CCWGG | 1 cut(s) | 105 |
| PspGI | CCWGG | 1 cut(s) | 105 |
| PspN4I | GGNNCC | 2 cut(s) | 654, 686 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 366, 605 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| Sau3AI | GATC | 2 cut(s) | 444, 626 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 107 |
| SfaNI | GCATC | 1 cut(s) | 552 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 366, 605 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 5 cut(s) | 17, 428, 522, 619, 658 |
| SspMI | CTAG | 6 cut(s) | 45, 126, 158, 338, 537, 729 |
| StyD4I | CCNGG | 1 cut(s) | 105 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 315, 582 |
| TaqI | TCGA | 2 cut(s) | 120, 520 |
| TasI | AATT | 5 cut(s) | 17, 428, 522, 619, 658 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TscAI | CASTG | 2 cut(s) | 186, 439 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 3 cut(s) | 272, 276, 545 |
| TspGWI | ACGGA | 1 cut(s) | 619 |
| TspRI | CASTG | 2 cut(s) | 186, 439 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 678 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 103 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 6 cut(s) | 45, 126, 158, 338, 537, 729 |