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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 584 |
| AciI | CCGC | 2 cut(s) | 159, 277 |
| AclWI | GGATC | 2 cut(s) | 97, 110 |
| AfaI | GTAC | 1 cut(s) | 300 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 199, 596 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 167, 292 |
| AluBI | AGCT | 2 cut(s) | 155, 478 |
| AluI | AGCT | 2 cut(s) | 155, 478 |
| Alw21I | GWGCWC | 1 cut(s) | 177 |
| Alw26I | GTCTC | 2 cut(s) | 32, 412 |
| AlwI | GGATC | 2 cut(s) | 97, 110 |
| Ama87I | CYCGRG | 1 cut(s) | 209 |
| ApeKI | GCWGC | 2 cut(s) | 79, 82 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 321 |
| AspLEI | GCGC | 1 cut(s) | 50 |
| AspS9I | GGNCC | 2 cut(s) | 67, 190 |
| AvaI | CYCGRG | 1 cut(s) | 209 |
| AvaII | GGWCC | 2 cut(s) | 67, 190 |
| BaeGI | GKGCMC | 1 cut(s) | 589 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 584 |
| BbsI | GAAGAC | 1 cut(s) | 392 |
| Bbv12I | GWGCWC | 1 cut(s) | 177 |
| BbvI | GCAGC | 2 cut(s) | 91, 94 |
| BccI | CCATC | 2 cut(s) | 334, 368 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 412 |
| BfaI | CTAG | 4 cut(s) | 35, 107, 195, 566 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 2 cut(s) | 80, 83 |
| BlsI | GCNGC | 2 cut(s) | 81, 84 |
| Bme18I | GGWCC | 2 cut(s) | 67, 190 |
| BmeT110I | CYCGRG | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 190 |
| BmiI | GGNNCC | 6 cut(s) | 68, 104, 192, 487, 553, 586 |
| BmsI | GCATC | 2 cut(s) | 94, 468 |
| BpiI | GAAGAC | 1 cut(s) | 392 |
| BsaBI | GATNNNNATC | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 1 cut(s) | 546 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 199, 596 |
| Bse3DI | GCAATG | 1 cut(s) | 232 |
| Bse8I | GATNNNNATC | 1 cut(s) | 377 |
| BseDI | CCNNGG | 1 cut(s) | 546 |
| BseJI | GATNNNNATC | 1 cut(s) | 377 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 199, 596 |
| BseMI | GCAATG | 1 cut(s) | 232 |
| BseSI | GKGCMC | 1 cut(s) | 589 |
| BseXI | GCAGC | 2 cut(s) | 91, 94 |
| BsgI | GTGCAG | 2 cut(s) | 98, 396 |
| BshNI | GGYRCC | 1 cut(s) | 584 |
| BsiHKAI | GWGCWC | 1 cut(s) | 177 |
| BsiHKCI | CYCGRG | 1 cut(s) | 209 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 199, 596 |
| BsmAI | GTCTC | 2 cut(s) | 32, 412 |
| BsmBI | CGTCTC | 1 cut(s) | 412 |
| BsoBI | CYCGRG | 1 cut(s) | 209 |
| Bsp1286I | GDGCHC | 2 cut(s) | 177, 589 |
| Bsp143I | GATC | 2 cut(s) | 102, 378 |
| Bsp19I | CCATGG | 1 cut(s) | 546 |
| BspACI | CCGC | 2 cut(s) | 159, 277 |
| BspHI | TCATGA | 1 cut(s) | 472 |
| BspLI | GGNNCC | 6 cut(s) | 68, 104, 192, 487, 553, 586 |
| BspPI | GGATC | 2 cut(s) | 97, 110 |
| BspT107I | GGYRCC | 1 cut(s) | 584 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrDI | GCAATG | 1 cut(s) | 232 |
| BssECI | CCNNGG | 1 cut(s) | 546 |
| BssMI | GATC | 2 cut(s) | 102, 378 |
| BssT1I | CCWWGG | 1 cut(s) | 546 |
| Bst6I | CTCTTC | 1 cut(s) | 180 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstDEI | CTNAG | 1 cut(s) | 573 |
| BstDSI | CCRYGG | 1 cut(s) | 546 |
| BstHHI | GCGC | 1 cut(s) | 50 |
| BstKTI | GATC | 2 cut(s) | 105, 381 |
| BstMAI | GTCTC | 2 cut(s) | 32, 412 |
| BstMBI | GATC | 2 cut(s) | 102, 378 |
| BstSLI | GKGCMC | 1 cut(s) | 589 |
| BstV1I | GCAGC | 2 cut(s) | 91, 94 |
| BstV2I | GAAGAC | 1 cut(s) | 392 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtgI | CCRYGG | 1 cut(s) | 546 |
| BtsIMutI | CAGTG | 2 cut(s) | 363, 413 |
| CciI | TCATGA | 1 cut(s) | 472 |
| CfoI | GCGC | 1 cut(s) | 50 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 190 |
| CseI | GACGC | 1 cut(s) | 465 |
| Csp6I | GTAC | 1 cut(s) | 299 |
| CviAII | CATG | 4 cut(s) | 302, 473, 490, 547 |
| CviJI | RGCY | 8 cut(s) | 95, 124, 155, 273, 306, 320, 478, 486 |
| CviKI_1 | RGCY | 8 cut(s) | 95, 124, 155, 273, 306, 320, 478, 486 |
| CviQI | GTAC | 1 cut(s) | 299 |
| DdeI | CTNAG | 1 cut(s) | 573 |
| DpnI | GATC | 2 cut(s) | 104, 380 |
| DpnII | GATC | 2 cut(s) | 102, 378 |
| Eam1104I | CTCTTC | 1 cut(s) | 180 |
| EarI | CTCTTC | 1 cut(s) | 180 |
| Eco130I | CCWWGG | 1 cut(s) | 546 |
| Eco47I | GGWCC | 2 cut(s) | 67, 190 |
| Eco88I | CYCGRG | 1 cut(s) | 209 |
| EcoO109I | RGGNCCY | 1 cut(s) | 190 |
| EcoT14I | CCWWGG | 1 cut(s) | 546 |
| ErhI | CCWWGG | 1 cut(s) | 546 |
| Esp3I | CGTCTC | 1 cut(s) | 412 |
| FaeI | CATG | 4 cut(s) | 305, 476, 493, 550 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 4 cut(s) | 301, 472, 489, 546 |
| Fnu4HI | GCNGC | 2 cut(s) | 80, 83 |
| Fsp4HI | GCNGC | 2 cut(s) | 80, 83 |
| FspBI | CTAG | 4 cut(s) | 35, 107, 195, 566 |
| GlaI | GCGC | 1 cut(s) | 49 |
| GluI | GCNGC | 2 cut(s) | 80, 83 |
| HgaI | GACGC | 1 cut(s) | 465 |
| HhaI | GCGC | 1 cut(s) | 50 |
| Hin1II | CATG | 4 cut(s) | 305, 476, 493, 550 |
| Hin6I | GCGC | 1 cut(s) | 48 |
| HinP1I | GCGC | 1 cut(s) | 48 |
| HinfI | GANTC | 3 cut(s) | 236, 388, 569 |
| Hpy188I | TCNGA | 2 cut(s) | 132, 438 |
| Hpy188III | TCNNGA | 4 cut(s) | 233, 382, 473, 566 |
| HpyAV | CCTTC | 2 cut(s) | 332, 586 |
| HpyCH4IV | ACGT | 1 cut(s) | 495 |
| HpyCH4V | TGCA | 5 cut(s) | 79, 225, 413, 425, 452 |
| HpyF3I | CTNAG | 1 cut(s) | 573 |
| HpySE526I | ACGT | 1 cut(s) | 495 |
| Hsp92II | CATG | 4 cut(s) | 305, 476, 493, 550 |
| HspAI | GCGC | 1 cut(s) | 48 |
| Kzo9I | GATC | 2 cut(s) | 102, 378 |
| LmnI | GCTCC | 1 cut(s) | 491 |
| LpnPI | CCDG | 4 cut(s) | 23, 36, 254, 438 |
| Lsp1109I | GCAGC | 2 cut(s) | 91, 94 |
| LweI | GCATC | 2 cut(s) | 94, 468 |
| MaeI | CTAG | 4 cut(s) | 35, 107, 195, 566 |
| MaeII | ACGT | 1 cut(s) | 495 |
| MaeIII | GTNAC | 2 cut(s) | 5, 233 |
| MalI | GATC | 2 cut(s) | 104, 380 |
| MboI | GATC | 2 cut(s) | 102, 378 |
| MboII | GAAGA | 3 cut(s) | 197, 397, 538 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MhlI | GDGCHC | 2 cut(s) | 177, 589 |
| MluCI | AATT | 4 cut(s) | 250, 310, 430, 535 |
| MlyI | GAGTC | 3 cut(s) | 230, 382, 578 |
| MnlI | CCTC | 4 cut(s) | 181, 188, 284, 590 |
| MroXI | GAANNNNTTC | 1 cut(s) | 321 |
| MseI | TTAA | 2 cut(s) | 20, 90 |
| MslI | CAYNNNNRTG | 1 cut(s) | 180 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| NcoI | CCATGG | 1 cut(s) | 546 |
| NdeII | GATC | 2 cut(s) | 102, 378 |
| NlaIII | CATG | 4 cut(s) | 305, 476, 493, 550 |
| NlaIV | GGNNCC | 6 cut(s) | 68, 104, 192, 487, 553, 586 |
| NmuCI | GTSAC | 1 cut(s) | 233 |
| PaeR7I | CTCGAG | 1 cut(s) | 209 |
| PagI | TCATGA | 1 cut(s) | 472 |
| PdmI | GAANNNNTTC | 1 cut(s) | 321 |
| PkrI | GCNGC | 2 cut(s) | 81, 84 |
| PleI | GAGTC | 3 cut(s) | 230, 382, 577 |
| PpsI | GAGTC | 3 cut(s) | 230, 382, 577 |
| PpuMI | RGGWCCY | 1 cut(s) | 190 |
| Psp5II | RGGWCCY | 1 cut(s) | 190 |
| PspN4I | GGNNCC | 6 cut(s) | 68, 104, 192, 487, 553, 586 |
| PspPI | GGNCC | 2 cut(s) | 67, 190 |
| PspPPI | RGGWCCY | 1 cut(s) | 190 |
| PspXI | VCTCGAGB | 1 cut(s) | 209 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| RsaI | GTAC | 1 cut(s) | 300 |
| RsaNI | GTAC | 1 cut(s) | 299 |
| RseI | CAYNNNNRTG | 1 cut(s) | 180 |
| SaqAI | TTAA | 2 cut(s) | 20, 90 |
| SatI | GCNGC | 2 cut(s) | 80, 83 |
| Sau3AI | GATC | 2 cut(s) | 102, 378 |
| Sau96I | GGNCC | 2 cut(s) | 67, 190 |
| SchI | GAGTC | 3 cut(s) | 230, 382, 578 |
| SduI | GDGCHC | 2 cut(s) | 177, 589 |
| SetI | ASST | 8 cut(s) | 12, 157, 180, 204, 401, 470, 480, 498 |
| SfaNI | GCATC | 2 cut(s) | 94, 468 |
| Sfr274I | CTCGAG | 1 cut(s) | 209 |
| SinI | GGWCC | 2 cut(s) | 67, 190 |
| SlaI | CTCGAG | 1 cut(s) | 209 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 180 |
| SmlI | CTYRAG | 2 cut(s) | 89, 209 |
| SmoI | CTYRAG | 2 cut(s) | 89, 209 |
| Sse9I | AATT | 4 cut(s) | 250, 310, 430, 535 |
| SsiI | CCGC | 2 cut(s) | 159, 277 |
| SspMI | CTAG | 4 cut(s) | 35, 107, 195, 566 |
| StyI | CCWWGG | 1 cut(s) | 546 |
| TaiI | ACGT | 1 cut(s) | 498 |
| TaqI | TCGA | 2 cut(s) | 210, 381 |
| TasI | AATT | 4 cut(s) | 250, 310, 430, 535 |
| Tru1I | TTAA | 2 cut(s) | 20, 90 |
| Tru9I | TTAA | 2 cut(s) | 20, 90 |
| TscAI | CASTG | 2 cut(s) | 370, 420 |
| TseFI | GTSAC | 1 cut(s) | 233 |
| TseI | GCWGC | 2 cut(s) | 79, 82 |
| Tsp45I | GTSAC | 1 cut(s) | 233 |
| TspDTI | ATGAA | 3 cut(s) | 198, 461, 506 |
| TspGWI | ACGGA | 2 cut(s) | 59, 286 |
| TspRI | CASTG | 2 cut(s) | 370, 420 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 190 |
| XbaI | TCTAGA | 1 cut(s) | 565 |
| XhoI | CTCGAG | 1 cut(s) | 209 |
| XmnI | GAANNNNTTC | 1 cut(s) | 321 |
| XspI | CTAG | 4 cut(s) | 35, 107, 195, 566 |