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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1368 |
| Acc65I | GGTACC | 1 cut(s) | 139 |
| AccB1I | GGYRCC | 4 cut(s) | 139, 1323, 1481, 1581 |
| AciI | CCGC | 8 cut(s) | 90, 93, 134, 326, 342, 511, 1048, 1586 |
| AclWI | GGATC | 5 cut(s) | 212, 225, 281, 289, 1260 |
| AcoI | YGGCCR | 3 cut(s) | 173, 980, 1468 |
| AcsI | RAATTY | 3 cut(s) | 263, 1067, 1292 |
| AcuI | CTGAAG | 1 cut(s) | 1245 |
| AcyI | GRCGYC | 3 cut(s) | 1324, 1482, 1647 |
| AfaI | GTAC | 2 cut(s) | 141, 680 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 50, 242, 304, 332, 1608, 1612 |
| AjiI | CACGTC | 1 cut(s) | 373 |
| AjnI | CCWGG | 7 cut(s) | 49, 116, 297, 537, 561, 1669, 1719 |
| AleI | CACNNNNGTG | 1 cut(s) | 1005 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 182, 214 |
| AluBI | AGCT | 5 cut(s) | 587, 593, 722, 1201, 1211 |
| AluI | AGCT | 5 cut(s) | 587, 593, 722, 1201, 1211 |
| Alw26I | GTCTC | 2 cut(s) | 287, 1135 |
| AlwI | GGATC | 5 cut(s) | 212, 225, 281, 289, 1260 |
| Ama87I | CYCGRG | 1 cut(s) | 551 |
| ApeKI | GCWGC | 2 cut(s) | 277, 611 |
| ApoI | RAATTY | 3 cut(s) | 263, 1067, 1292 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 638 |
| Asp718I | GGTACC | 1 cut(s) | 139 |
| AspA2I | CCTAGG | 1 cut(s) | 1606 |
| AspLEI | GCGC | 3 cut(s) | 1326, 1484, 1525 |
| AspS9I | GGNCC | 6 cut(s) | 67, 245, 335, 360, 1370, 1723 |
| AsuC2I | CCSGG | 1 cut(s) | 1579 |
| AsuHPI | GGTGA | 4 cut(s) | 225, 1670, 1678, 1685 |
| AvaI | CYCGRG | 1 cut(s) | 551 |
| AvaII | GGWCC | 4 cut(s) | 245, 335, 360, 1370 |
| AvrII | CCTAGG | 1 cut(s) | 1606 |
| AxyI | CCTNAGG | 1 cut(s) | 1346 |
| BaeGI | GKGCMC | 1 cut(s) | 1584 |
| BalI | TGGCCA | 2 cut(s) | 982, 1470 |
| BamHI | GGATCC | 1 cut(s) | 217 |
| BanI | GGYRCC | 4 cut(s) | 139, 1323, 1481, 1581 |
| BanII | GRGCYC | 1 cut(s) | 1312 |
| BbsI | GAAGAC | 1 cut(s) | 705 |
| BbvI | GCAGC | 2 cut(s) | 289, 623 |
| BccI | CCATC | 5 cut(s) | 524, 1135, 1509, 1637, 1659 |
| BciT130I | CCWGG | 7 cut(s) | 51, 118, 299, 539, 563, 1671, 1721 |
| BciVI | GTATCC | 3 cut(s) | 535, 1345, 1585 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcnI | CCSGG | 1 cut(s) | 1579 |
| BcoDI | GTCTC | 2 cut(s) | 287, 1135 |
| BfaI | CTAG | 3 cut(s) | 80, 483, 1607 |
| BfoI | RGCGCY | 3 cut(s) | 1327, 1485, 1526 |
| BfuI | GTATCC | 3 cut(s) | 535, 1345, 1585 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 620 |
| BglII | AGATCT | 1 cut(s) | 1330 |
| BisI | GCNGC | 3 cut(s) | 93, 278, 612 |
| BlnI | CCTAGG | 1 cut(s) | 1606 |
| BlsI | GCNGC | 3 cut(s) | 94, 279, 613 |
| Bme1390I | CCNGG | 8 cut(s) | 51, 118, 299, 539, 563, 1579, 1671, 1721 |
| Bme18I | GGWCC | 4 cut(s) | 245, 335, 360, 1370 |
| BmeT110I | CYCGRG | 1 cut(s) | 551 |
| BmgBI | CACGTC | 1 cut(s) | 373 |
| BmgT120I | GGNCC | 6 cut(s) | 67, 245, 335, 360, 1370, 1723 |
| BmrFI | CCNGG | 8 cut(s) | 51, 118, 299, 539, 563, 1579, 1671, 1721 |
| BmsI | GCATC | 4 cut(s) | 387, 1472, 1501, 1666 |
| BpiI | GAAGAC | 1 cut(s) | 705 |
| BpmI | CTGGAG | 2 cut(s) | 659, 1653 |
| Bpu10I | CCTNAGC | 1 cut(s) | 45 |
| BpuEI | CTTGAG | 2 cut(s) | 573, 1012 |
| BpuMI | CCSGG | 1 cut(s) | 1579 |
| BsaHI | GRCGYC | 3 cut(s) | 1324, 1482, 1647 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 182, 212 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 50, 242, 304, 332, 1608, 1612 |
| Bse118I | RCCGGY | 4 cut(s) | 130, 171, 304, 1601 |
| Bse1I | ACTGG | 2 cut(s) | 481, 676 |
| Bse21I | CCTNAGG | 1 cut(s) | 1346 |
| BseBI | CCWGG | 7 cut(s) | 51, 118, 299, 539, 563, 1671, 1721 |
| BseGI | GGATG | 4 cut(s) | 571, 642, 1239, 1648 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 50, 242, 304, 332, 1608, 1612 |
| BseMII | CTCAG | 2 cut(s) | 1050, 1533 |
| BseNI | ACTGG | 2 cut(s) | 481, 676 |
| BseSI | GKGCMC | 1 cut(s) | 1584 |
| BseXI | GCAGC | 2 cut(s) | 289, 623 |
| BshNI | GGYRCC | 4 cut(s) | 139, 1323, 1481, 1581 |
| BsiHKCI | CYCGRG | 1 cut(s) | 551 |
| BsiSI | CCGG | 5 cut(s) | 131, 172, 305, 1578, 1602 |
| BslFI | GGGAC | 3 cut(s) | 348, 373, 1606 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 50, 242, 304, 332, 1608, 1612 |
| BsmAI | GTCTC | 2 cut(s) | 287, 1135 |
| BsmBI | CGTCTC | 2 cut(s) | 287, 1135 |
| BsmFI | GGGAC | 3 cut(s) | 348, 373, 1606 |
| BsoBI | CYCGRG | 1 cut(s) | 551 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1312, 1584 |
| Bsp143I | GATC | 8 cut(s) | 3, 217, 286, 294, 1083, 1265, 1330, 1432 |
| Bsp19I | CCATGG | 2 cut(s) | 977, 1638 |
| BspACI | CCGC | 8 cut(s) | 90, 93, 134, 326, 342, 511, 1048, 1586 |
| BspCNI | CTCAG | 2 cut(s) | 1049, 1534 |
| BspHI | TCATGA | 1 cut(s) | 502 |
| BspPI | GGATC | 5 cut(s) | 212, 225, 281, 289, 1260 |
| BspQI | GCTCTTC | 1 cut(s) | 1221 |
| BspT107I | GGYRCC | 4 cut(s) | 139, 1323, 1481, 1581 |
| BsrFI | RCCGGY | 4 cut(s) | 130, 171, 304, 1601 |
| BsrI | ACTGG | 2 cut(s) | 481, 676 |
| BssAI | RCCGGY | 4 cut(s) | 130, 171, 304, 1601 |
| BssMI | GATC | 8 cut(s) | 3, 217, 286, 294, 1083, 1265, 1330, 1432 |
| BssNI | GRCGYC | 3 cut(s) | 1324, 1482, 1647 |
| BssT1I | CCWWGG | 7 cut(s) | 774, 826, 878, 930, 977, 1606, 1638 |
| Bst2UI | CCWGG | 7 cut(s) | 51, 118, 299, 539, 563, 1671, 1721 |
| Bst4CI | ACNGT | 3 cut(s) | 577, 1620, 1708 |
| Bst6I | CTCTTC | 1 cut(s) | 1221 |
| BstACI | GRCGYC | 3 cut(s) | 1324, 1482, 1647 |
| BstC8I | GCNNGC | 3 cut(s) | 515, 585, 1614 |
| BstDEI | CTNAG | 7 cut(s) | 45, 616, 1036, 1149, 1346, 1542, 1785 |
| BstDSI | CCRYGG | 3 cut(s) | 977, 1269, 1638 |
| BstF5I | GGATG | 4 cut(s) | 571, 642, 1239, 1648 |
| BstH2I | RGCGCY | 3 cut(s) | 1327, 1485, 1526 |
| BstHHI | GCGC | 3 cut(s) | 1326, 1484, 1525 |
| BstKTI | GATC | 8 cut(s) | 6, 220, 289, 297, 1086, 1268, 1333, 1435 |
| BstMAI | GTCTC | 2 cut(s) | 287, 1135 |
| BstMBI | GATC | 8 cut(s) | 3, 217, 286, 294, 1083, 1265, 1330, 1432 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 89, 375, 599, 608, 620, 629, 1520, 1754 |
| BstNI | CCWGG | 7 cut(s) | 51, 118, 299, 539, 563, 1671, 1721 |
| BstNSI | RCATGY | 2 cut(s) | 58, 521 |
| BstSCI | CCNGG | 8 cut(s) | 49, 116, 297, 537, 561, 1577, 1669, 1719 |
| BstSLI | GKGCMC | 1 cut(s) | 1584 |
| BstV1I | GCAGC | 2 cut(s) | 289, 623 |
| BstV2I | GAAGAC | 1 cut(s) | 705 |
| BstX2I | RGATCY | 4 cut(s) | 217, 294, 1265, 1330 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1478 |
| BstYI | RGATCY | 4 cut(s) | 217, 294, 1265, 1330 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1346 |
| BsuI | GTATCC | 3 cut(s) | 535, 1345, 1585 |
| BtgI | CCRYGG | 3 cut(s) | 977, 1269, 1638 |
| BtgZI | GCGATG | 1 cut(s) | 1109 |
| BtrI | CACGTC | 1 cut(s) | 373 |
| BtsCI | GGATG | 4 cut(s) | 571, 642, 1239, 1648 |
| BtsI | GCAGTG | 1 cut(s) | 1043 |
| BtsIMutI | CAGTG | 1 cut(s) | 1043 |
| Cac8I | GCNNGC | 3 cut(s) | 515, 585, 1614 |
| CciI | TCATGA | 1 cut(s) | 502 |
| CfoI | GCGC | 3 cut(s) | 1326, 1484, 1525 |
| Cfr10I | RCCGGY | 4 cut(s) | 130, 171, 304, 1601 |
| Cfr13I | GGNCC | 6 cut(s) | 67, 245, 335, 360, 1370, 1723 |
| CseI | GACGC | 2 cut(s) | 269, 1636 |
| Csp6I | GTAC | 2 cut(s) | 140, 679 |
| CviAII | CATG | 8 cut(s) | 55, 503, 518, 978, 1232, 1472, 1639, 1655 |
| CviQI | GTAC | 2 cut(s) | 140, 679 |
| DdeI | CTNAG | 7 cut(s) | 45, 616, 1036, 1149, 1346, 1542, 1785 |
| DinI | GGCGCC | 2 cut(s) | 1325, 1483 |
| DpnI | GATC | 8 cut(s) | 5, 219, 288, 296, 1085, 1267, 1332, 1434 |
| DpnII | GATC | 8 cut(s) | 3, 217, 286, 294, 1083, 1265, 1330, 1432 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1368 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1368 |
| EaeI | YGGCCR | 3 cut(s) | 173, 980, 1468 |
| Eam1104I | CTCTTC | 1 cut(s) | 1221 |
| EarI | CTCTTC | 1 cut(s) | 1221 |
| EciI | GGCGGA | 1 cut(s) | 500 |
| Eco130I | CCWWGG | 7 cut(s) | 774, 826, 878, 930, 977, 1606, 1638 |
| Eco24I | GRGCYC | 1 cut(s) | 1312 |
| Eco32I | GATATC | 1 cut(s) | 488 |
| Eco47I | GGWCC | 4 cut(s) | 245, 335, 360, 1370 |
| Eco57I | CTGAAG | 1 cut(s) | 1245 |
| Eco81I | CCTNAGG | 1 cut(s) | 1346 |
| Eco88I | CYCGRG | 1 cut(s) | 551 |
| EcoO109I | RGGNCCY | 3 cut(s) | 67, 335, 360 |
| EcoRI | GAATTC | 1 cut(s) | 1292 |
| EcoRII | CCWGG | 7 cut(s) | 49, 116, 297, 537, 561, 1669, 1719 |
| EcoRV | GATATC | 1 cut(s) | 488 |
| EcoT14I | CCWWGG | 7 cut(s) | 774, 826, 878, 930, 977, 1606, 1638 |
| EcoT38I | GRGCYC | 1 cut(s) | 1312 |
| EgeI | GGCGCC | 2 cut(s) | 1325, 1483 |
| EheI | GGCGCC | 2 cut(s) | 1325, 1483 |
| ErhI | CCWWGG | 7 cut(s) | 774, 826, 878, 930, 977, 1606, 1638 |
| Esp3I | CGTCTC | 2 cut(s) | 287, 1135 |
| FaeI | CATG | 8 cut(s) | 58, 506, 521, 981, 1235, 1475, 1642, 1658 |
| FaqI | GGGAC | 3 cut(s) | 348, 373, 1606 |
| FatI | CATG | 8 cut(s) | 54, 502, 517, 977, 1231, 1471, 1638, 1654 |
| FauI | CCCGC | 1 cut(s) | 1593 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 3 cut(s) | 93, 278, 612 |
| FokI | GGATG | 4 cut(s) | 578, 629, 1226, 1655 |
| FriOI | GRGCYC | 1 cut(s) | 1312 |
| Fsp4HI | GCNGC | 3 cut(s) | 93, 278, 612 |
| FspBI | CTAG | 3 cut(s) | 80, 483, 1607 |
| GlaI | GCGC | 3 cut(s) | 1325, 1483, 1524 |
| GluI | GCNGC | 3 cut(s) | 93, 278, 612 |
| GsuI | CTGGAG | 2 cut(s) | 659, 1653 |
| HaeII | RGCGCY | 3 cut(s) | 1327, 1485, 1526 |
| HapII | CCGG | 5 cut(s) | 131, 172, 305, 1578, 1602 |
| HgaI | GACGC | 2 cut(s) | 269, 1636 |
| HhaI | GCGC | 3 cut(s) | 1326, 1484, 1525 |
| Hin1I | GRCGYC | 3 cut(s) | 1324, 1482, 1647 |
| Hin1II | CATG | 8 cut(s) | 58, 506, 521, 981, 1235, 1475, 1642, 1658 |
| Hin6I | GCGC | 3 cut(s) | 1324, 1482, 1523 |
| HinP1I | GCGC | 3 cut(s) | 1324, 1482, 1523 |
| HincII | GTYRAC | 3 cut(s) | 386, 410, 573 |
| HindII | GTYRAC | 3 cut(s) | 386, 410, 573 |
| HindIII | AAGCTT | 2 cut(s) | 591, 720 |
| HpaI | GTTAAC | 1 cut(s) | 573 |
| HpaII | CCGG | 5 cut(s) | 131, 172, 305, 1578, 1602 |
| HphI | GGTGA | 4 cut(s) | 225, 1670, 1678, 1685 |
| Hpy166II | GTNNAC | 5 cut(s) | 386, 410, 573, 1596, 1770 |
| Hpy188I | TCNGA | 8 cut(s) | 24, 245, 252, 355, 432, 529, 1039, 1543 |
| Hpy8I | GTNNAC | 5 cut(s) | 386, 410, 573, 1596, 1770 |
| HpyCH4III | ACNGT | 3 cut(s) | 577, 1620, 1708 |
| HpyCH4IV | ACGT | 3 cut(s) | 372, 731, 1438 |
| HpyCH4V | TGCA | 1 cut(s) | 1175 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 89, 375, 599, 608, 620, 629, 1520, 1754 |
| HpyF3I | CTNAG | 7 cut(s) | 45, 616, 1036, 1149, 1346, 1542, 1785 |
| HpySE526I | ACGT | 3 cut(s) | 372, 731, 1438 |
| Hsp92I | GRCGYC | 3 cut(s) | 1324, 1482, 1647 |
| Hsp92II | CATG | 8 cut(s) | 58, 506, 521, 981, 1235, 1475, 1642, 1658 |
| HspAI | GCGC | 3 cut(s) | 1324, 1482, 1523 |
| KasI | GGCGCC | 2 cut(s) | 1323, 1481 |
| KflI | GGGWCCC | 2 cut(s) | 335, 360 |
| KpnI | GGTACC | 1 cut(s) | 143 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| KspAI | GTTAAC | 1 cut(s) | 573 |
| Kzo9I | GATC | 8 cut(s) | 3, 217, 286, 294, 1083, 1265, 1330, 1432 |
| LguI | GCTCTTC | 1 cut(s) | 1221 |
| LmnI | GCTCC | 4 cut(s) | 25, 466, 678, 1208 |
| Lsp1109I | GCAGC | 2 cut(s) | 289, 623 |
| LweI | GCATC | 4 cut(s) | 387, 1472, 1501, 1666 |
| MaeI | CTAG | 3 cut(s) | 80, 483, 1607 |
| MaeII | ACGT | 3 cut(s) | 372, 731, 1438 |
| MaeIII | GTNAC | 3 cut(s) | 437, 1168, 1397 |
| MalI | GATC | 8 cut(s) | 5, 219, 288, 296, 1085, 1267, 1332, 1434 |
| MboI | GATC | 8 cut(s) | 3, 217, 286, 294, 1083, 1265, 1330, 1432 |
| MboII | GAAGA | 6 cut(s) | 217, 707, 710, 1120, 1238, 1261 |
| MflI | RGATCY | 4 cut(s) | 217, 294, 1265, 1330 |
| MhlI | GDGCHC | 2 cut(s) | 1312, 1584 |
| MlsI | TGGCCA | 2 cut(s) | 982, 1470 |
| MluCI | AATT | 7 cut(s) | 263, 449, 1067, 1161, 1258, 1292, 1297 |
| MluNI | TGGCCA | 2 cut(s) | 982, 1470 |
| Mly113I | GGCGCC | 2 cut(s) | 1324, 1482 |
| MlyI | GAGTC | 3 cut(s) | 19, 646, 1547 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| Mox20I | TGGCCA | 2 cut(s) | 982, 1470 |
| MroXI | GAANNNNTTC | 1 cut(s) | 638 |
| MscI | TGGCCA | 2 cut(s) | 982, 1470 |
| MseI | TTAA | 5 cut(s) | 572, 579, 1053, 1061, 1494 |
| MslI | CAYNNNNRTG | 8 cut(s) | 647, 663, 1005, 1244, 1476, 1506, 1656, 1659 |
| Msp20I | TGGCCA | 2 cut(s) | 982, 1470 |
| MspI | CCGG | 5 cut(s) | 131, 172, 305, 1578, 1602 |
| MspR9I | CCNGG | 8 cut(s) | 51, 118, 299, 539, 563, 1579, 1671, 1721 |
| MvaI | CCWGG | 7 cut(s) | 51, 118, 299, 539, 563, 1671, 1721 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 89, 375, 599, 608, 620, 629, 1520, 1754 |
| NarI | GGCGCC | 2 cut(s) | 1324, 1482 |
| NciI | CCSGG | 1 cut(s) | 1579 |
| NcoI | CCATGG | 2 cut(s) | 977, 1638 |
| NdeII | GATC | 8 cut(s) | 3, 217, 286, 294, 1083, 1265, 1330, 1432 |
| NlaIII | CATG | 8 cut(s) | 58, 506, 521, 981, 1235, 1475, 1642, 1658 |
| NmeAIII | GCCGAG | 1 cut(s) | 7 |
| NspI | RCATGY | 2 cut(s) | 58, 521 |
| OliI | CACNNNNGTG | 1 cut(s) | 1005 |
| PaeR7I | CTCGAG | 1 cut(s) | 551 |
| PagI | TCATGA | 1 cut(s) | 502 |
| PciSI | GCTCTTC | 1 cut(s) | 1221 |
| PdmI | GAANNNNTTC | 1 cut(s) | 638 |
| PfeI | GAWTC | 7 cut(s) | 121, 534, 547, 668, 1111, 1182, 1697 |
| PfoI | TCCNGGA | 3 cut(s) | 297, 537, 561 |
| PkrI | GCNGC | 3 cut(s) | 94, 279, 613 |
| PleI | GAGTC | 3 cut(s) | 19, 646, 1546 |
| PluTI | GGCGCC | 2 cut(s) | 1327, 1485 |
| PpsI | GAGTC | 3 cut(s) | 19, 646, 1546 |
| PpuMI | RGGWCCY | 2 cut(s) | 335, 360 |
| Psp5II | RGGWCCY | 2 cut(s) | 335, 360 |
| Psp6I | CCWGG | 7 cut(s) | 49, 116, 297, 537, 561, 1669, 1719 |
| PspGI | CCWGG | 7 cut(s) | 49, 116, 297, 537, 561, 1669, 1719 |
| PspPI | GGNCC | 6 cut(s) | 67, 245, 335, 360, 1370, 1723 |
| PspPPI | RGGWCCY | 2 cut(s) | 335, 360 |
| PsuI | RGATCY | 4 cut(s) | 217, 294, 1265, 1330 |
| RsaI | GTAC | 2 cut(s) | 141, 680 |
| RsaNI | GTAC | 2 cut(s) | 140, 679 |
| RseI | CAYNNNNRTG | 8 cut(s) | 647, 663, 1005, 1244, 1476, 1506, 1656, 1659 |
| SapI | GCTCTTC | 1 cut(s) | 1221 |
| SaqAI | TTAA | 5 cut(s) | 572, 579, 1053, 1061, 1494 |
| SatI | GCNGC | 3 cut(s) | 93, 278, 612 |
| Sau3AI | GATC | 8 cut(s) | 3, 217, 286, 294, 1083, 1265, 1330, 1432 |
| Sau96I | GGNCC | 6 cut(s) | 67, 245, 335, 360, 1370, 1723 |
| SchI | GAGTC | 3 cut(s) | 19, 646, 1547 |
| ScrFI | CCNGG | 8 cut(s) | 51, 118, 299, 539, 563, 1579, 1671, 1721 |
| SduI | GDGCHC | 2 cut(s) | 1312, 1584 |
| SfaNI | GCATC | 4 cut(s) | 387, 1472, 1501, 1666 |
| SfoI | GGCGCC | 2 cut(s) | 1325, 1483 |
| Sfr274I | CTCGAG | 1 cut(s) | 551 |
| SinI | GGWCC | 4 cut(s) | 245, 335, 360, 1370 |
| SlaI | CTCGAG | 1 cut(s) | 551 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 647, 663, 1005, 1244, 1476, 1506, 1656, 1659 |
| SmlI | CTYRAG | 3 cut(s) | 551, 588, 991 |
| SmoI | CTYRAG | 3 cut(s) | 551, 588, 991 |
| Sse9I | AATT | 7 cut(s) | 263, 449, 1067, 1161, 1258, 1292, 1297 |
| SsiI | CCGC | 8 cut(s) | 90, 93, 134, 326, 342, 511, 1048, 1586 |
| SspDI | GGCGCC | 2 cut(s) | 1323, 1481 |
| SspMI | CTAG | 3 cut(s) | 80, 483, 1607 |
| StyD4I | CCNGG | 8 cut(s) | 49, 116, 297, 537, 561, 1577, 1669, 1719 |
| StyI | CCWWGG | 7 cut(s) | 774, 826, 878, 930, 977, 1606, 1638 |
| TaaI | ACNGT | 3 cut(s) | 577, 1620, 1708 |
| TaiI | ACGT | 3 cut(s) | 375, 734, 1441 |
| TaqI | TCGA | 7 cut(s) | 188, 285, 552, 1159, 1262, 1306, 1564 |
| TaqII | GACCGA | 1 cut(s) | 371 |
| TasI | AATT | 7 cut(s) | 263, 449, 1067, 1161, 1258, 1292, 1297 |
| TauI | GCSGC | 1 cut(s) | 95 |
| TfiI | GAWTC | 7 cut(s) | 121, 534, 547, 668, 1111, 1182, 1697 |
| Tru1I | TTAA | 5 cut(s) | 572, 579, 1053, 1061, 1494 |
| Tru9I | TTAA | 5 cut(s) | 572, 579, 1053, 1061, 1494 |
| TscAI | CASTG | 1 cut(s) | 1050 |
| TseI | GCWGC | 2 cut(s) | 277, 611 |
| TspDTI | ATGAA | 7 cut(s) | 491, 631, 704, 708, 1079, 1184, 1229 |
| TspGWI | ACGGA | 2 cut(s) | 1258, 1581 |
| TspRI | CASTG | 1 cut(s) | 1050 |
| VpaK11BI | GGWCC | 4 cut(s) | 245, 335, 360, 1370 |
| XapI | RAATTY | 3 cut(s) | 263, 1067, 1292 |
| XbaI | TCTAGA | 1 cut(s) | 482 |
| XceI | RCATGY | 2 cut(s) | 58, 521 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1636 |
| XhoI | CTCGAG | 1 cut(s) | 551 |
| XmaJI | CCTAGG | 1 cut(s) | 1606 |
| XmnI | GAANNNNTTC | 1 cut(s) | 638 |
| XspI | CTAG | 3 cut(s) | 80, 483, 1607 |