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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 525, 570 |
| AccB1I | GGYRCC | 3 cut(s) | 58, 190, 746 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 585 |
| AciI | CCGC | 4 cut(s) | 188, 646, 680, 1014 |
| AclI | AACGTT | 1 cut(s) | 552 |
| AclWI | GGATC | 3 cut(s) | 78, 518, 844 |
| AcvI | CACGTG | 2 cut(s) | 689, 707 |
| AcyI | GRCGYC | 1 cut(s) | 191 |
| AdeI | CACNNNGTG | 1 cut(s) | 776 |
| AfaI | GTAC | 1 cut(s) | 929 |
| AfeI | AGCGCT | 1 cut(s) | 259 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 393, 585, 655, 737, 760 |
| AflIII | ACRYGT | 4 cut(s) | 686, 704, 819, 924 |
| AgsI | TTSAA | 9 cut(s) | 33, 307, 314, 343, 494, 531, 856, 888, 985 |
| AjiI | CACGTC | 1 cut(s) | 925 |
| AjnI | CCWGG | 2 cut(s) | 54, 66 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 486, 518 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 62, 94 |
| AluBI | AGCT | 3 cut(s) | 371, 427, 884 |
| AluI | AGCT | 3 cut(s) | 371, 427, 884 |
| Alw21I | GWGCWC | 2 cut(s) | 781, 1005 |
| Alw26I | GTCTC | 1 cut(s) | 951 |
| Alw44I | GTGCAC | 2 cut(s) | 777, 1001 |
| AlwI | GGATC | 3 cut(s) | 78, 518, 844 |
| Aor51HI | AGCGCT | 1 cut(s) | 259 |
| AoxI | GGCC | 1 cut(s) | 533 |
| ApaLI | GTGCAC | 2 cut(s) | 777, 1001 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspA2I | CCTAGG | 1 cut(s) | 758 |
| AspLEI | GCGC | 3 cut(s) | 193, 260, 591 |
| AspS9I | GGNCC | 3 cut(s) | 534, 635, 907 |
| AsuHPI | GGTGA | 2 cut(s) | 368, 961 |
| AvaII | GGWCC | 2 cut(s) | 635, 907 |
| AvrII | CCTAGG | 1 cut(s) | 758 |
| BaeGI | GKGCMC | 2 cut(s) | 781, 1005 |
| BanI | GGYRCC | 3 cut(s) | 58, 190, 746 |
| BauI | CACGAG | 1 cut(s) | 514 |
| BbrPI | CACGTG | 2 cut(s) | 689, 707 |
| BbsI | GAAGAC | 1 cut(s) | 443 |
| Bbv12I | GWGCWC | 2 cut(s) | 781, 1005 |
| BccI | CCATC | 2 cut(s) | 579, 972 |
| BciT130I | CCWGG | 2 cut(s) | 56, 68 |
| BciVI | GTATCC | 2 cut(s) | 676, 737 |
| BcoDI | GTCTC | 1 cut(s) | 951 |
| BfaI | CTAG | 4 cut(s) | 261, 732, 759, 881 |
| BfmI | CTRYAG | 1 cut(s) | 380 |
| BfoI | RGCGCY | 2 cut(s) | 194, 261 |
| BfuI | GTATCC | 2 cut(s) | 676, 737 |
| BisI | GCNGC | 2 cut(s) | 189, 1014 |
| BlnI | CCTAGG | 1 cut(s) | 758 |
| BlsI | GCNGC | 2 cut(s) | 190, 1015 |
| Bme1390I | CCNGG | 2 cut(s) | 56, 68 |
| Bme18I | GGWCC | 2 cut(s) | 635, 907 |
| BmgBI | CACGTC | 1 cut(s) | 925 |
| BmgT120I | GGNCC | 3 cut(s) | 534, 635, 907 |
| BmiI | GGNNCC | 5 cut(s) | 60, 192, 636, 748, 908 |
| BmrFI | CCNGG | 2 cut(s) | 56, 68 |
| BmsI | GCATC | 5 cut(s) | 150, 175, 227, 584, 1000 |
| BoxI | GACNNNNGTC | 1 cut(s) | 822 |
| BpiI | GAAGAC | 1 cut(s) | 443 |
| Bsa29I | ATCGAT | 1 cut(s) | 829 |
| BsaAI | YACGTR | 2 cut(s) | 689, 707 |
| BsaBI | GATNNNNATC | 1 cut(s) | 835 |
| BsaHI | GRCGYC | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 1 cut(s) | 758 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 133, 163, 210, 240, 739, 769 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 393, 585, 655, 737, 760 |
| Bse3DI | GCAATG | 3 cut(s) | 107, 703, 866 |
| Bse8I | GATNNNNATC | 1 cut(s) | 835 |
| BseBI | CCWGG | 2 cut(s) | 56, 68 |
| BseCI | ATCGAT | 1 cut(s) | 829 |
| BseDI | CCNNGG | 1 cut(s) | 758 |
| BseGI | GGATG | 5 cut(s) | 165, 242, 575, 960, 1015 |
| BseJI | GATNNNNATC | 1 cut(s) | 835 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 393, 585, 655, 737, 760 |
| BseMI | GCAATG | 3 cut(s) | 107, 703, 866 |
| BseMII | CTCAG | 3 cut(s) | 147, 224, 902 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 2 cut(s) | 781, 1005 |
| BsgI | GTGCAG | 1 cut(s) | 311 |
| BshFI | GGCC | 1 cut(s) | 535 |
| BshNI | GGYRCC | 3 cut(s) | 58, 190, 746 |
| BshVI | ATCGAT | 1 cut(s) | 829 |
| BsiHKAI | GWGCWC | 2 cut(s) | 781, 1005 |
| BslFI | GGGAC | 1 cut(s) | 920 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 393, 585, 655, 737, 760 |
| BsmAI | GTCTC | 1 cut(s) | 951 |
| BsmFI | GGGAC | 1 cut(s) | 920 |
| BsnI | GGCC | 1 cut(s) | 535 |
| Bsp1286I | GDGCHC | 2 cut(s) | 781, 1005 |
| Bsp143I | GATC | 5 cut(s) | 70, 152, 229, 510, 836 |
| BspACI | CCGC | 4 cut(s) | 188, 646, 680, 1014 |
| BspANI | GGCC | 1 cut(s) | 535 |
| BspCNI | CTCAG | 3 cut(s) | 146, 223, 903 |
| BspDI | ATCGAT | 1 cut(s) | 829 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 5 cut(s) | 60, 192, 636, 748, 908 |
| BspPI | GGATC | 3 cut(s) | 78, 518, 844 |
| BspQI | GCTCTTC | 2 cut(s) | 259, 378 |
| BspT107I | GGYRCC | 3 cut(s) | 58, 190, 746 |
| BsrDI | GCAATG | 3 cut(s) | 107, 703, 866 |
| BssECI | CCNNGG | 1 cut(s) | 758 |
| BssMI | GATC | 5 cut(s) | 70, 152, 229, 510, 836 |
| BssNI | GRCGYC | 1 cut(s) | 191 |
| BssSI | CACGAG | 1 cut(s) | 514 |
| BssT1I | CCWWGG | 1 cut(s) | 758 |
| Bst2BI | CACGAG | 1 cut(s) | 514 |
| Bst2UI | CCWGG | 2 cut(s) | 56, 68 |
| Bst4CI | ACNGT | 2 cut(s) | 384, 668 |
| Bst6I | CTCTTC | 2 cut(s) | 259, 378 |
| BstACI | GRCGYC | 1 cut(s) | 191 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 785 |
| BstBAI | YACGTR | 2 cut(s) | 689, 707 |
| BstC8I | GCNNGC | 2 cut(s) | 871, 875 |
| BstDEI | CTNAG | 4 cut(s) | 133, 210, 606, 911 |
| BstEII | GGTNACC | 1 cut(s) | 4 |
| BstF5I | GGATG | 5 cut(s) | 165, 242, 575, 960, 1015 |
| BstH2I | RGCGCY | 2 cut(s) | 194, 261 |
| BstHHI | GCGC | 3 cut(s) | 193, 260, 591 |
| BstKTI | GATC | 5 cut(s) | 73, 155, 232, 513, 839 |
| BstMAI | GTCTC | 1 cut(s) | 951 |
| BstMBI | GATC | 5 cut(s) | 70, 152, 229, 510, 836 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 266, 595, 785, 870 |
| BstNI | CCWGG | 2 cut(s) | 56, 68 |
| BstNSI | RCATGY | 2 cut(s) | 788, 823 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 822 |
| BstPI | GGTNACC | 1 cut(s) | 4 |
| BstSCI | CCNGG | 2 cut(s) | 54, 66 |
| BstSFI | CTRYAG | 1 cut(s) | 380 |
| BstSLI | GKGCMC | 2 cut(s) | 781, 1005 |
| BstV2I | GAAGAC | 1 cut(s) | 443 |
| Bsu15I | ATCGAT | 1 cut(s) | 829 |
| BsuI | GTATCC | 2 cut(s) | 676, 737 |
| BsuRI | GGCC | 1 cut(s) | 535 |
| BsuTUI | ATCGAT | 1 cut(s) | 829 |
| BtrI | CACGTC | 1 cut(s) | 925 |
| BtsCI | GGATG | 5 cut(s) | 165, 242, 575, 960, 1015 |
| Cac8I | GCNNGC | 2 cut(s) | 871, 875 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 3 cut(s) | 193, 260, 591 |
| Cfr13I | GGNCC | 3 cut(s) | 534, 635, 907 |
| ClaI | ATCGAT | 1 cut(s) | 829 |
| Csp6I | GTAC | 1 cut(s) | 928 |
| CviAII | CATG | 5 cut(s) | 82, 388, 557, 785, 820 |
| CviJI | RGCY | 6 cut(s) | 371, 427, 464, 535, 720, 884 |
| CviKI_1 | RGCY | 6 cut(s) | 371, 427, 464, 535, 720, 884 |
| CviQI | GTAC | 1 cut(s) | 928 |
| DdeI | CTNAG | 4 cut(s) | 133, 210, 606, 911 |
| DinI | GGCGCC | 1 cut(s) | 192 |
| DpnI | GATC | 5 cut(s) | 72, 154, 231, 512, 838 |
| DpnII | GATC | 5 cut(s) | 70, 152, 229, 510, 836 |
| DraIII | CACNNNGTG | 1 cut(s) | 776 |
| Eam1104I | CTCTTC | 2 cut(s) | 259, 378 |
| EarI | CTCTTC | 2 cut(s) | 259, 378 |
| Eco130I | CCWWGG | 1 cut(s) | 758 |
| Eco47I | GGWCC | 2 cut(s) | 635, 907 |
| Eco47III | AGCGCT | 1 cut(s) | 259 |
| Eco72I | CACGTG | 2 cut(s) | 689, 707 |
| Eco91I | GGTNACC | 1 cut(s) | 4 |
| EcoO109I | RGGNCCY | 1 cut(s) | 907 |
| EcoO65I | GGTNACC | 1 cut(s) | 4 |
| EcoRII | CCWGG | 2 cut(s) | 54, 66 |
| EcoT14I | CCWWGG | 1 cut(s) | 758 |
| EcoT22I | ATGCAT | 1 cut(s) | 577 |
| EgeI | GGCGCC | 1 cut(s) | 192 |
| EheI | GGCGCC | 1 cut(s) | 192 |
| ErhI | CCWWGG | 1 cut(s) | 758 |
| FaeI | CATG | 5 cut(s) | 85, 391, 560, 788, 823 |
| FaqI | GGGAC | 1 cut(s) | 920 |
| FatI | CATG | 5 cut(s) | 81, 387, 556, 784, 819 |
| FauNDI | CATATG | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 2 cut(s) | 189, 1014 |
| FokI | GGATG | 5 cut(s) | 172, 249, 562, 947, 1022 |
| Fsp4HI | GCNGC | 2 cut(s) | 189, 1014 |
| FspBI | CTAG | 4 cut(s) | 261, 732, 759, 881 |
| GlaI | GCGC | 3 cut(s) | 192, 259, 590 |
| GluI | GCNGC | 2 cut(s) | 189, 1014 |
| HaeII | RGCGCY | 2 cut(s) | 194, 261 |
| HaeIII | GGCC | 1 cut(s) | 535 |
| HhaI | GCGC | 3 cut(s) | 193, 260, 591 |
| Hin1I | GRCGYC | 1 cut(s) | 191 |
| Hin1II | CATG | 5 cut(s) | 85, 391, 560, 788, 823 |
| Hin6I | GCGC | 3 cut(s) | 191, 258, 589 |
| HinP1I | GCGC | 3 cut(s) | 191, 258, 589 |
| HinfI | GANTC | 1 cut(s) | 439 |
| HphI | GGTGA | 2 cut(s) | 368, 961 |
| Hpy166II | GTNNAC | 4 cut(s) | 404, 779, 928, 1003 |
| Hpy188I | TCNGA | 3 cut(s) | 136, 213, 367 |
| Hpy188III | TCNNGA | 4 cut(s) | 182, 514, 557, 888 |
| Hpy8I | GTNNAC | 4 cut(s) | 404, 779, 928, 1003 |
| HpyAV | CCTTC | 3 cut(s) | 301, 460, 653 |
| HpyCH4III | ACNGT | 2 cut(s) | 384, 668 |
| HpyCH4IV | ACGT | 5 cut(s) | 552, 688, 706, 775, 924 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 266, 595, 785, 870 |
| HpyF3I | CTNAG | 4 cut(s) | 133, 210, 606, 911 |
| HpySE526I | ACGT | 5 cut(s) | 552, 688, 706, 775, 924 |
| Hsp92I | GRCGYC | 1 cut(s) | 191 |
| Hsp92II | CATG | 5 cut(s) | 85, 391, 560, 788, 823 |
| HspAI | GCGC | 3 cut(s) | 191, 258, 589 |
| KasI | GGCGCC | 1 cut(s) | 190 |
| Kzo9I | GATC | 5 cut(s) | 70, 152, 229, 510, 836 |
| LguI | GCTCTTC | 2 cut(s) | 259, 378 |
| LmnI | GCTCC | 1 cut(s) | 595 |
| LpnPI | CCDG | 8 cut(s) | 41, 53, 68, 80, 312, 880, 889, 923 |
| LweI | GCATC | 5 cut(s) | 150, 175, 227, 584, 1000 |
| MaeI | CTAG | 4 cut(s) | 261, 732, 759, 881 |
| MaeII | ACGT | 5 cut(s) | 552, 688, 706, 775, 924 |
| MaeIII | GTNAC | 1 cut(s) | 4 |
| MalI | GATC | 5 cut(s) | 72, 154, 231, 512, 838 |
| MboI | GATC | 5 cut(s) | 70, 152, 229, 510, 836 |
| MboII | GAAGA | 6 cut(s) | 276, 365, 448, 950, 953, 956 |
| MhlI | GDGCHC | 2 cut(s) | 781, 1005 |
| MluCI | AATT | 6 cut(s) | 361, 429, 520, 526, 565, 794 |
| Mly113I | GGCGCC | 1 cut(s) | 191 |
| MlyI | GAGTC | 1 cut(s) | 433 |
| MmeI | TCCRAC | 1 cut(s) | 484 |
| Mph1103I | ATGCAT | 1 cut(s) | 577 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MseI | TTAA | 1 cut(s) | 797 |
| MslI | CAYNNNNRTG | 2 cut(s) | 831, 1008 |
| MspR9I | CCNGG | 2 cut(s) | 56, 68 |
| MvaI | CCWGG | 2 cut(s) | 56, 68 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 266, 595, 785, 870 |
| NarI | GGCGCC | 1 cut(s) | 191 |
| NdeI | CATATG | 1 cut(s) | 196 |
| NdeII | GATC | 5 cut(s) | 70, 152, 229, 510, 836 |
| NlaIII | CATG | 5 cut(s) | 85, 391, 560, 788, 823 |
| NlaIV | GGNNCC | 5 cut(s) | 60, 192, 636, 748, 908 |
| NsiI | ATGCAT | 1 cut(s) | 577 |
| NspI | RCATGY | 2 cut(s) | 788, 823 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PciI | ACATGT | 1 cut(s) | 819 |
| PciSI | GCTCTTC | 2 cut(s) | 259, 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 585 |
| PkrI | GCNGC | 2 cut(s) | 190, 1015 |
| PleI | GAGTC | 1 cut(s) | 433 |
| PluTI | GGCGCC | 1 cut(s) | 194 |
| PmaCI | CACGTG | 2 cut(s) | 689, 707 |
| PmlI | CACGTG | 2 cut(s) | 689, 707 |
| PpsI | GAGTC | 1 cut(s) | 433 |
| Ppu21I | YACGTR | 2 cut(s) | 689, 707 |
| PpuMI | RGGWCCY | 1 cut(s) | 907 |
| PscI | ACATGT | 1 cut(s) | 819 |
| PshAI | GACNNNNGTC | 1 cut(s) | 822 |
| PsiI | TTATAA | 2 cut(s) | 525, 570 |
| Psp1406I | AACGTT | 1 cut(s) | 552 |
| Psp5II | RGGWCCY | 1 cut(s) | 907 |
| Psp6I | CCWGG | 2 cut(s) | 54, 66 |
| PspCI | CACGTG | 2 cut(s) | 689, 707 |
| PspEI | GGTNACC | 1 cut(s) | 4 |
| PspGI | CCWGG | 2 cut(s) | 54, 66 |
| PspN4I | GGNNCC | 5 cut(s) | 60, 192, 636, 748, 908 |
| PspPI | GGNCC | 3 cut(s) | 534, 635, 907 |
| PspPPI | RGGWCCY | 1 cut(s) | 907 |
| RsaI | GTAC | 1 cut(s) | 929 |
| RsaNI | GTAC | 1 cut(s) | 928 |
| RseI | CAYNNNNRTG | 2 cut(s) | 831, 1008 |
| SapI | GCTCTTC | 2 cut(s) | 259, 378 |
| SaqAI | TTAA | 1 cut(s) | 797 |
| SatI | GCNGC | 2 cut(s) | 189, 1014 |
| Sau3AI | GATC | 5 cut(s) | 70, 152, 229, 510, 836 |
| Sau96I | GGNCC | 3 cut(s) | 534, 635, 907 |
| SchI | GAGTC | 1 cut(s) | 433 |
| ScrFI | CCNGG | 2 cut(s) | 56, 68 |
| SduI | GDGCHC | 2 cut(s) | 781, 1005 |
| SfaNI | GCATC | 5 cut(s) | 150, 175, 227, 584, 1000 |
| SfcI | CTRYAG | 1 cut(s) | 380 |
| SfoI | GGCGCC | 1 cut(s) | 192 |
| SinI | GGWCC | 2 cut(s) | 635, 907 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 831, 1008 |
| Sse9I | AATT | 6 cut(s) | 361, 429, 520, 526, 565, 794 |
| SsiI | CCGC | 4 cut(s) | 188, 646, 680, 1014 |
| SspDI | GGCGCC | 1 cut(s) | 190 |
| SspI | AATATT | 1 cut(s) | 42 |
| SspMI | CTAG | 4 cut(s) | 261, 732, 759, 881 |
| StyD4I | CCNGG | 2 cut(s) | 54, 66 |
| StyI | CCWWGG | 1 cut(s) | 758 |
| TaaI | ACNGT | 2 cut(s) | 384, 668 |
| TaiI | ACGT | 5 cut(s) | 555, 691, 709, 778, 927 |
| TaqI | TCGA | 3 cut(s) | 151, 228, 829 |
| TasI | AATT | 6 cut(s) | 361, 429, 520, 526, 565, 794 |
| TauI | GCSGC | 2 cut(s) | 191, 1016 |
| Tru1I | TTAA | 1 cut(s) | 797 |
| Tru9I | TTAA | 1 cut(s) | 797 |
| TspDTI | ATGAA | 3 cut(s) | 70, 545, 1011 |
| TspGWI | ACGGA | 1 cut(s) | 523 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 585 |
| VneI | GTGCAC | 2 cut(s) | 777, 1001 |
| VpaK11BI | GGWCC | 2 cut(s) | 635, 907 |
| XceI | RCATGY | 2 cut(s) | 788, 823 |
| XmaJI | CCTAGG | 1 cut(s) | 758 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 4 cut(s) | 261, 732, 759, 881 |
| Zsp2I | ATGCAT | 1 cut(s) | 577 |