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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 420 |
| AciI | CCGC | 2 cut(s) | 333, 380 |
| AclWI | GGATC | 5 cut(s) | 110, 155, 168, 404, 417 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 170, 264, 314 |
| AleI | CACNNNNGTG | 1 cut(s) | 354 |
| AluBI | AGCT | 1 cut(s) | 87 |
| AluI | AGCT | 1 cut(s) | 87 |
| AlwI | GGATC | 5 cut(s) | 110, 155, 168, 404, 417 |
| AoxI | GGCC | 1 cut(s) | 222 |
| ApeKI | GCWGC | 1 cut(s) | 323 |
| AspLEI | GCGC | 1 cut(s) | 7 |
| AspS9I | GGNCC | 1 cut(s) | 222 |
| AsuHPI | GGTGA | 4 cut(s) | 35, 107, 143, 347 |
| BamHI | GGATCC | 2 cut(s) | 160, 409 |
| BanI | GGYRCC | 1 cut(s) | 420 |
| BbvI | GCAGC | 1 cut(s) | 310 |
| BccI | CCATC | 7 cut(s) | 20, 128, 140, 271, 276, 308, 332 |
| BceAI | ACGGC | 1 cut(s) | 202 |
| BfaI | CTAG | 2 cut(s) | 92, 216 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BisI | GCNGC | 1 cut(s) | 324 |
| BlsI | GCNGC | 1 cut(s) | 325 |
| BmgT120I | GGNCC | 1 cut(s) | 222 |
| BmiI | GGNNCC | 3 cut(s) | 162, 411, 422 |
| Bsa29I | ATCGAT | 1 cut(s) | 105 |
| BsaAI | YACGTR | 1 cut(s) | 352 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 170, 264, 314 |
| BseCI | ATCGAT | 1 cut(s) | 105 |
| BseGI | GGATG | 1 cut(s) | 287 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 170, 264, 314 |
| BseXI | GCAGC | 1 cut(s) | 310 |
| BshFI | GGCC | 1 cut(s) | 224 |
| BshNI | GGYRCC | 1 cut(s) | 420 |
| BshVI | ATCGAT | 1 cut(s) | 105 |
| BsiSI | CCGG | 1 cut(s) | 171 |
| BslFI | GGGAC | 1 cut(s) | 397 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 170, 264, 314 |
| BsmFI | GGGAC | 1 cut(s) | 397 |
| BsmI | GAATGC | 1 cut(s) | 174 |
| BsnI | GGCC | 1 cut(s) | 224 |
| Bsp143I | GATC | 4 cut(s) | 102, 106, 160, 409 |
| BspACI | CCGC | 2 cut(s) | 333, 380 |
| BspANI | GGCC | 1 cut(s) | 224 |
| BspDI | ATCGAT | 1 cut(s) | 105 |
| BspLI | GGNNCC | 3 cut(s) | 162, 411, 422 |
| BspPI | GGATC | 5 cut(s) | 110, 155, 168, 404, 417 |
| BspT107I | GGYRCC | 1 cut(s) | 420 |
| BssMI | GATC | 4 cut(s) | 102, 106, 160, 409 |
| Bst4CI | ACNGT | 1 cut(s) | 388 |
| Bst6I | CTCTTC | 1 cut(s) | 257 |
| BstBAI | YACGTR | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 1 cut(s) | 288 |
| BstDEI | CTNAG | 1 cut(s) | 8 |
| BstF5I | GGATG | 1 cut(s) | 287 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 1 cut(s) | 7 |
| BstKTI | GATC | 4 cut(s) | 105, 109, 163, 412 |
| BstMBI | GATC | 4 cut(s) | 102, 106, 160, 409 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 221 |
| BstNSI | RCATGY | 1 cut(s) | 373 |
| BstV1I | GCAGC | 1 cut(s) | 310 |
| BstX2I | RGATCY | 2 cut(s) | 160, 409 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 356 |
| BstYI | RGATCY | 2 cut(s) | 160, 409 |
| Bsu15I | ATCGAT | 1 cut(s) | 105 |
| BsuRI | GGCC | 1 cut(s) | 224 |
| BsuTUI | ATCGAT | 1 cut(s) | 105 |
| BtsCI | GGATG | 1 cut(s) | 287 |
| Cac8I | GCNNGC | 1 cut(s) | 288 |
| CfoI | GCGC | 1 cut(s) | 7 |
| Cfr13I | GGNCC | 1 cut(s) | 222 |
| ClaI | ATCGAT | 1 cut(s) | 105 |
| CviAII | CATG | 1 cut(s) | 370 |
| CviJI | RGCY | 6 cut(s) | 37, 71, 87, 224, 286, 343 |
| CviKI_1 | RGCY | 6 cut(s) | 37, 71, 87, 224, 286, 343 |
| DdeI | CTNAG | 1 cut(s) | 8 |
| DpnI | GATC | 4 cut(s) | 104, 108, 162, 411 |
| DpnII | GATC | 4 cut(s) | 102, 106, 160, 409 |
| Eam1104I | CTCTTC | 1 cut(s) | 257 |
| EarI | CTCTTC | 1 cut(s) | 257 |
| FaeI | CATG | 1 cut(s) | 373 |
| FaiI | YATR | 2 cut(s) | 371, 416 |
| FaqI | GGGAC | 1 cut(s) | 397 |
| FatI | CATG | 1 cut(s) | 369 |
| FauI | CCCGC | 1 cut(s) | 373 |
| Fnu4HI | GCNGC | 1 cut(s) | 324 |
| FokI | GGATG | 1 cut(s) | 294 |
| Fsp4HI | GCNGC | 1 cut(s) | 324 |
| FspBI | CTAG | 2 cut(s) | 92, 216 |
| GlaI | GCGC | 1 cut(s) | 6 |
| GluI | GCNGC | 1 cut(s) | 324 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 1 cut(s) | 224 |
| HapII | CCGG | 1 cut(s) | 171 |
| HhaI | GCGC | 1 cut(s) | 7 |
| Hin1II | CATG | 1 cut(s) | 373 |
| Hin6I | GCGC | 1 cut(s) | 5 |
| HinP1I | GCGC | 1 cut(s) | 5 |
| HinfI | GANTC | 1 cut(s) | 155 |
| HpaII | CCGG | 1 cut(s) | 171 |
| HphI | GGTGA | 4 cut(s) | 35, 107, 143, 347 |
| Hpy166II | GTNNAC | 1 cut(s) | 236 |
| Hpy188I | TCNGA | 3 cut(s) | 160, 259, 297 |
| Hpy188III | TCNNGA | 1 cut(s) | 311 |
| Hpy8I | GTNNAC | 1 cut(s) | 236 |
| Hpy99I | CGWCG | 1 cut(s) | 253 |
| HpyAV | CCTTC | 1 cut(s) | 92 |
| HpyCH4III | ACNGT | 1 cut(s) | 388 |
| HpyCH4IV | ACGT | 2 cut(s) | 251, 351 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 221 |
| HpyF3I | CTNAG | 1 cut(s) | 8 |
| HpySE526I | ACGT | 2 cut(s) | 251, 351 |
| Hsp92II | CATG | 1 cut(s) | 373 |
| HspAI | GCGC | 1 cut(s) | 5 |
| Kzo9I | GATC | 4 cut(s) | 102, 106, 160, 409 |
| LpnPI | CCDG | 1 cut(s) | 184 |
| Lsp1109I | GCAGC | 1 cut(s) | 310 |
| MaeI | CTAG | 2 cut(s) | 92, 216 |
| MaeII | ACGT | 2 cut(s) | 251, 351 |
| MalI | GATC | 4 cut(s) | 104, 108, 162, 411 |
| MboI | GATC | 4 cut(s) | 102, 106, 160, 409 |
| MboII | GAAGA | 2 cut(s) | 274, 312 |
| MflI | RGATCY | 2 cut(s) | 160, 409 |
| MluCI | AATT | 1 cut(s) | 395 |
| MnlI | CCTC | 3 cut(s) | 52, 258, 318 |
| MslI | CAYNNNNRTG | 2 cut(s) | 354, 374 |
| MspI | CCGG | 1 cut(s) | 171 |
| Mva1269I | GAATGC | 1 cut(s) | 174 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 221 |
| NdeII | GATC | 4 cut(s) | 102, 106, 160, 409 |
| NlaIII | CATG | 1 cut(s) | 373 |
| NlaIV | GGNNCC | 3 cut(s) | 162, 411, 422 |
| NspI | RCATGY | 1 cut(s) | 373 |
| OliI | CACNNNNGTG | 1 cut(s) | 354 |
| PctI | GAATGC | 1 cut(s) | 174 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| PflFI | GACNNNGTC | 1 cut(s) | 253 |
| PkrI | GCNGC | 1 cut(s) | 325 |
| Ppu21I | YACGTR | 1 cut(s) | 352 |
| PspN4I | GGNNCC | 3 cut(s) | 162, 411, 422 |
| PspPI | GGNCC | 1 cut(s) | 222 |
| PsuI | RGATCY | 2 cut(s) | 160, 409 |
| PsyI | GACNNNGTC | 1 cut(s) | 253 |
| RseI | CAYNNNNRTG | 2 cut(s) | 354, 374 |
| SatI | GCNGC | 1 cut(s) | 324 |
| Sau3AI | GATC | 4 cut(s) | 102, 106, 160, 409 |
| Sau96I | GGNCC | 1 cut(s) | 222 |
| SetI | ASST | 6 cut(s) | 89, 97, 254, 310, 354, 358 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 354, 374 |
| Sse9I | AATT | 1 cut(s) | 395 |
| SsiI | CCGC | 2 cut(s) | 333, 380 |
| SspMI | CTAG | 2 cut(s) | 92, 216 |
| TaaI | ACNGT | 1 cut(s) | 388 |
| TaiI | ACGT | 2 cut(s) | 254, 354 |
| TaqI | TCGA | 3 cut(s) | 105, 153, 312 |
| TasI | AATT | 1 cut(s) | 395 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| TseI | GCWGC | 1 cut(s) | 323 |
| Tth111I | GACNNNGTC | 1 cut(s) | 253 |
| XceI | RCATGY | 1 cut(s) | 373 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 356 |
| XspI | CTAG | 2 cut(s) | 92, 216 |