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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 511 |
| AciI | CCGC | 4 cut(s) | 84, 226, 241, 625 |
| AclWI | GGATC | 3 cut(s) | 22, 34, 35 |
| AcyI | GRCGYC | 1 cut(s) | 705 |
| AfaI | GTAC | 2 cut(s) | 179, 264 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 16, 187, 542, 613 |
| AflII | CTTAAG | 1 cut(s) | 14 |
| AflIII | ACRYGT | 1 cut(s) | 661 |
| AgsI | TTSAA | 1 cut(s) | 256 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 256 |
| AluBI | AGCT | 6 cut(s) | 80, 104, 125, 205, 424, 446 |
| AluI | AGCT | 6 cut(s) | 80, 104, 125, 205, 424, 446 |
| Alw26I | GTCTC | 1 cut(s) | 376 |
| AlwI | GGATC | 3 cut(s) | 22, 34, 35 |
| Ama87I | CYCGRG | 1 cut(s) | 218 |
| Aor13HI | TCCGGA | 1 cut(s) | 511 |
| AoxI | GGCC | 3 cut(s) | 4, 114, 679 |
| ApeKI | GCWGC | 2 cut(s) | 80, 223 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 285 |
| AspLEI | GCGC | 2 cut(s) | 166, 748 |
| AspS9I | GGNCC | 3 cut(s) | 4, 193, 497 |
| AsuHPI | GGTGA | 2 cut(s) | 596, 713 |
| AvaI | CYCGRG | 1 cut(s) | 218 |
| AvaII | GGWCC | 2 cut(s) | 193, 497 |
| BamHI | GGATCC | 1 cut(s) | 27 |
| BbsI | GAAGAC | 1 cut(s) | 356 |
| BbvI | GCAGC | 2 cut(s) | 67, 235 |
| BccI | CCATC | 4 cut(s) | 17, 18, 332, 732 |
| BcoDI | GTCTC | 1 cut(s) | 376 |
| BfaI | CTAG | 3 cut(s) | 32, 198, 486 |
| BfoI | RGCGCY | 1 cut(s) | 749 |
| BfrI | CTTAAG | 1 cut(s) | 14 |
| BisI | GCNGC | 3 cut(s) | 81, 84, 224 |
| BlsI | GCNGC | 3 cut(s) | 82, 85, 225 |
| Bme18I | GGWCC | 2 cut(s) | 193, 497 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 256 |
| BmeT110I | CYCGRG | 1 cut(s) | 218 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 193, 497 |
| BmiI | GGNNCC | 5 cut(s) | 29, 195, 498, 499, 647 |
| BmsI | GCATC | 1 cut(s) | 151 |
| BpiI | GAAGAC | 1 cut(s) | 356 |
| BpmI | CTGGAG | 1 cut(s) | 152 |
| BsaHI | GRCGYC | 1 cut(s) | 705 |
| BsaJI | CCNNGG | 2 cut(s) | 537, 649 |
| BsaWI | WCCGGW | 1 cut(s) | 511 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 16, 187, 542, 613 |
| BseAI | TCCGGA | 1 cut(s) | 511 |
| BseDI | CCNNGG | 2 cut(s) | 537, 649 |
| BseGI | GGATG | 1 cut(s) | 724 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 16, 187, 542, 613 |
| BseRI | GAGGAG | 1 cut(s) | 203 |
| BseXI | GCAGC | 2 cut(s) | 67, 235 |
| BshFI | GGCC | 3 cut(s) | 6, 116, 681 |
| BsiHKCI | CYCGRG | 1 cut(s) | 218 |
| BsiSI | CCGG | 1 cut(s) | 512 |
| BslFI | GGGAC | 1 cut(s) | 510 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 16, 187, 542, 613 |
| BsmAI | GTCTC | 1 cut(s) | 376 |
| BsmBI | CGTCTC | 1 cut(s) | 376 |
| BsmFI | GGGAC | 1 cut(s) | 510 |
| BsnI | GGCC | 3 cut(s) | 6, 116, 681 |
| BsoBI | CYCGRG | 1 cut(s) | 218 |
| Bsp13I | TCCGGA | 1 cut(s) | 511 |
| Bsp143I | GATC | 2 cut(s) | 27, 39 |
| BspACI | CCGC | 4 cut(s) | 84, 226, 241, 625 |
| BspANI | GGCC | 3 cut(s) | 6, 116, 681 |
| BspEI | TCCGGA | 1 cut(s) | 511 |
| BspHI | TCATGA | 2 cut(s) | 141, 418 |
| BspLI | GGNNCC | 5 cut(s) | 29, 195, 498, 499, 647 |
| BspPI | GGATC | 3 cut(s) | 22, 34, 35 |
| BspTI | CTTAAG | 1 cut(s) | 14 |
| BssECI | CCNNGG | 2 cut(s) | 537, 649 |
| BssMI | GATC | 2 cut(s) | 27, 39 |
| BssNI | GRCGYC | 1 cut(s) | 705 |
| BssT1I | CCWWGG | 1 cut(s) | 537 |
| Bst4CI | ACNGT | 1 cut(s) | 650 |
| Bst6I | CTCTTC | 1 cut(s) | 662 |
| BstACI | GRCGYC | 1 cut(s) | 705 |
| BstAFI | CTTAAG | 1 cut(s) | 14 |
| BstDEI | CTNAG | 3 cut(s) | 447, 564, 711 |
| BstDSI | CCRYGG | 1 cut(s) | 649 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 185 |
| BstF5I | GGATG | 1 cut(s) | 724 |
| BstH2I | RGCGCY | 1 cut(s) | 749 |
| BstHHI | GCGC | 2 cut(s) | 166, 748 |
| BstKTI | GATC | 2 cut(s) | 30, 42 |
| BstMAI | GTCTC | 1 cut(s) | 376 |
| BstMBI | GATC | 2 cut(s) | 27, 39 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 101, 122 |
| BstV1I | GCAGC | 2 cut(s) | 67, 235 |
| BstV2I | GAAGAC | 1 cut(s) | 356 |
| BstX2I | RGATCY | 2 cut(s) | 27, 39 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 689 |
| BstYI | RGATCY | 2 cut(s) | 27, 39 |
| BsuRI | GGCC | 3 cut(s) | 6, 116, 681 |
| BtgI | CCRYGG | 1 cut(s) | 649 |
| BtsCI | GGATG | 1 cut(s) | 724 |
| BtsIMutI | CAGTG | 1 cut(s) | 327 |
| CciI | TCATGA | 2 cut(s) | 141, 418 |
| CfoI | GCGC | 2 cut(s) | 166, 748 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 193, 497 |
| CseI | GACGC | 2 cut(s) | 555, 713 |
| Csp6I | GTAC | 2 cut(s) | 178, 263 |
| CviAII | CATG | 3 cut(s) | 142, 154, 419 |
| CviQI | GTAC | 2 cut(s) | 178, 263 |
| DdeI | CTNAG | 3 cut(s) | 447, 564, 711 |
| DpnI | GATC | 2 cut(s) | 29, 41 |
| DpnII | GATC | 2 cut(s) | 27, 39 |
| DriI | GACNNNNNGTC | 1 cut(s) | 256 |
| Eam1104I | CTCTTC | 1 cut(s) | 662 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 256 |
| EarI | CTCTTC | 1 cut(s) | 662 |
| Eco130I | CCWWGG | 1 cut(s) | 537 |
| Eco47I | GGWCC | 2 cut(s) | 193, 497 |
| Eco88I | CYCGRG | 1 cut(s) | 218 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 185 |
| EcoO109I | RGGNCCY | 2 cut(s) | 193, 497 |
| EcoT14I | CCWWGG | 1 cut(s) | 537 |
| ErhI | CCWWGG | 1 cut(s) | 537 |
| Esp3I | CGTCTC | 1 cut(s) | 376 |
| FaeI | CATG | 3 cut(s) | 145, 157, 422 |
| FaqI | GGGAC | 1 cut(s) | 510 |
| FatI | CATG | 3 cut(s) | 141, 153, 418 |
| Fnu4HI | GCNGC | 3 cut(s) | 81, 84, 224 |
| FokI | GGATG | 1 cut(s) | 711 |
| Fsp4HI | GCNGC | 3 cut(s) | 81, 84, 224 |
| FspBI | CTAG | 3 cut(s) | 32, 198, 486 |
| GlaI | GCGC | 2 cut(s) | 165, 747 |
| GluI | GCNGC | 3 cut(s) | 81, 84, 224 |
| GsuI | CTGGAG | 1 cut(s) | 152 |
| HaeII | RGCGCY | 1 cut(s) | 749 |
| HaeIII | GGCC | 3 cut(s) | 6, 116, 681 |
| HapII | CCGG | 1 cut(s) | 512 |
| HgaI | GACGC | 2 cut(s) | 555, 713 |
| HhaI | GCGC | 2 cut(s) | 166, 748 |
| Hin1I | GRCGYC | 1 cut(s) | 705 |
| Hin1II | CATG | 3 cut(s) | 145, 157, 422 |
| Hin6I | GCGC | 2 cut(s) | 164, 746 |
| HinP1I | GCGC | 2 cut(s) | 164, 746 |
| HincII | GTYRAC | 2 cut(s) | 231, 659 |
| HindII | GTYRAC | 2 cut(s) | 231, 659 |
| HinfI | GANTC | 2 cut(s) | 352, 515 |
| HpaII | CCGG | 1 cut(s) | 512 |
| HphI | GGTGA | 2 cut(s) | 596, 713 |
| Hpy166II | GTNNAC | 2 cut(s) | 231, 659 |
| Hpy188I | TCNGA | 2 cut(s) | 57, 402 |
| Hpy188III | TCNNGA | 6 cut(s) | 142, 169, 419, 486, 512, 582 |
| Hpy8I | GTNNAC | 2 cut(s) | 231, 659 |
| HpyAV | CCTTC | 3 cut(s) | 296, 373, 611 |
| HpyCH4III | ACNGT | 1 cut(s) | 650 |
| HpyCH4IV | ACGT | 4 cut(s) | 60, 441, 586, 661 |
| HpyCH4V | TGCA | 2 cut(s) | 377, 389 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 101, 122 |
| HpyF3I | CTNAG | 3 cut(s) | 447, 564, 711 |
| HpySE526I | ACGT | 4 cut(s) | 60, 441, 586, 661 |
| Hsp92I | GRCGYC | 1 cut(s) | 705 |
| Hsp92II | CATG | 3 cut(s) | 145, 157, 422 |
| HspAI | GCGC | 2 cut(s) | 164, 746 |
| KflI | GGGWCCC | 1 cut(s) | 497 |
| Kpn2I | TCCGGA | 1 cut(s) | 511 |
| Kzo9I | GATC | 2 cut(s) | 27, 39 |
| LmnI | GCTCC | 2 cut(s) | 171, 553 |
| LpnPI | CCDG | 5 cut(s) | 182, 504, 525, 567, 576 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 235 |
| LweI | GCATC | 1 cut(s) | 151 |
| MaeI | CTAG | 3 cut(s) | 32, 198, 486 |
| MaeII | ACGT | 4 cut(s) | 60, 441, 586, 661 |
| MaeIII | GTNAC | 2 cut(s) | 248, 701 |
| MalI | GATC | 2 cut(s) | 29, 41 |
| MboI | GATC | 2 cut(s) | 27, 39 |
| MboII | GAAGA | 2 cut(s) | 361, 679 |
| MflI | RGATCY | 2 cut(s) | 27, 39 |
| MluCI | AATT | 6 cut(s) | 135, 274, 394, 502, 520, 577 |
| MlyI | GAGTC | 2 cut(s) | 346, 524 |
| MnlI | CCTC | 9 cut(s) | 106, 181, 184, 191, 248, 536, 607, 647, 738 |
| MroI | TCCGGA | 1 cut(s) | 511 |
| MroXI | GAANNNNTTC | 1 cut(s) | 285 |
| MseI | TTAA | 2 cut(s) | 15, 302 |
| MslI | CAYNNNNRTG | 1 cut(s) | 156 |
| MspA1I | CMGCKG | 1 cut(s) | 226 |
| MspCI | CTTAAG | 1 cut(s) | 14 |
| MspI | CCGG | 1 cut(s) | 512 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 101, 122 |
| NdeII | GATC | 2 cut(s) | 27, 39 |
| NlaIII | CATG | 3 cut(s) | 145, 157, 422 |
| NlaIV | GGNNCC | 5 cut(s) | 29, 195, 498, 499, 647 |
| NmuCI | GTSAC | 2 cut(s) | 248, 701 |
| PaeR7I | CTCGAG | 1 cut(s) | 218 |
| PagI | TCATGA | 2 cut(s) | 141, 418 |
| PdmI | GAANNNNTTC | 1 cut(s) | 285 |
| PkrI | GCNGC | 3 cut(s) | 82, 85, 225 |
| PleI | GAGTC | 2 cut(s) | 346, 523 |
| PpsI | GAGTC | 2 cut(s) | 346, 523 |
| PpuMI | RGGWCCY | 2 cut(s) | 193, 497 |
| Psp5II | RGGWCCY | 2 cut(s) | 193, 497 |
| PspN4I | GGNNCC | 5 cut(s) | 29, 195, 498, 499, 647 |
| PspPI | GGNCC | 3 cut(s) | 4, 193, 497 |
| PspPPI | RGGWCCY | 2 cut(s) | 193, 497 |
| PspXI | VCTCGAGB | 1 cut(s) | 218 |
| PsuI | RGATCY | 2 cut(s) | 27, 39 |
| RsaI | GTAC | 2 cut(s) | 179, 264 |
| RsaNI | GTAC | 2 cut(s) | 178, 263 |
| RseI | CAYNNNNRTG | 1 cut(s) | 156 |
| SaqAI | TTAA | 2 cut(s) | 15, 302 |
| SatI | GCNGC | 3 cut(s) | 81, 84, 224 |
| Sau3AI | GATC | 2 cut(s) | 27, 39 |
| Sau96I | GGNCC | 3 cut(s) | 4, 193, 497 |
| SchI | GAGTC | 2 cut(s) | 346, 524 |
| SfaNI | GCATC | 1 cut(s) | 151 |
| Sfr274I | CTCGAG | 1 cut(s) | 218 |
| SinI | GGWCC | 2 cut(s) | 193, 497 |
| SlaI | CTCGAG | 1 cut(s) | 218 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 156 |
| SmlI | CTYRAG | 2 cut(s) | 14, 218 |
| SmoI | CTYRAG | 2 cut(s) | 14, 218 |
| Sse9I | AATT | 6 cut(s) | 135, 274, 394, 502, 520, 577 |
| SsiI | CCGC | 4 cut(s) | 84, 226, 241, 625 |
| SspMI | CTAG | 3 cut(s) | 32, 198, 486 |
| StyI | CCWWGG | 1 cut(s) | 537 |
| TaaI | ACNGT | 1 cut(s) | 650 |
| TaiI | ACGT | 4 cut(s) | 63, 444, 589, 664 |
| TaqI | TCGA | 1 cut(s) | 219 |
| TasI | AATT | 6 cut(s) | 135, 274, 394, 502, 520, 577 |
| TauI | GCSGC | 1 cut(s) | 86 |
| Tru1I | TTAA | 2 cut(s) | 15, 302 |
| Tru9I | TTAA | 2 cut(s) | 15, 302 |
| TscAI | CASTG | 1 cut(s) | 334 |
| TseFI | GTSAC | 2 cut(s) | 248, 701 |
| TseI | GCWGC | 2 cut(s) | 80, 223 |
| Tsp45I | GTSAC | 2 cut(s) | 248, 701 |
| TspDTI | ATGAA | 6 cut(s) | 105, 135, 170, 407, 452, 585 |
| TspGWI | ACGGA | 2 cut(s) | 250, 658 |
| TspRI | CASTG | 1 cut(s) | 334 |
| Vha464I | CTTAAG | 1 cut(s) | 14 |
| VpaK11BI | GGWCC | 2 cut(s) | 193, 497 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 185 |
| XbaI | TCTAGA | 1 cut(s) | 485 |
| XhoI | CTCGAG | 1 cut(s) | 218 |
| XmnI | GAANNNNTTC | 1 cut(s) | 285 |
| XspI | CTAG | 3 cut(s) | 32, 198, 486 |