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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 479 |
| AccBSI | CCGCTC | 1 cut(s) | 68 |
| AccII | CGCG | 1 cut(s) | 460 |
| AciI | CCGC | 3 cut(s) | 68, 250, 399 |
| AclWI | GGATC | 1 cut(s) | 152 |
| AcoI | YGGCCR | 1 cut(s) | 466 |
| AcsI | RAATTY | 1 cut(s) | 317 |
| AcyI | GRCGYC | 1 cut(s) | 480 |
| AdeI | CACNNNGTG | 1 cut(s) | 661 |
| AgsI | TTSAA | 2 cut(s) | 265, 517 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 3 cut(s) | 44, 602, 653 |
| AluI | AGCT | 3 cut(s) | 44, 602, 653 |
| Alw21I | GWGCWC | 1 cut(s) | 604 |
| Alw26I | GTCTC | 2 cut(s) | 181, 385 |
| AlwI | GGATC | 1 cut(s) | 152 |
| AoxI | GGCC | 2 cut(s) | 69, 466 |
| ApoI | RAATTY | 1 cut(s) | 317 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspLEI | GCGC | 3 cut(s) | 462, 482, 523 |
| AsuHPI | GGTGA | 2 cut(s) | 328, 610 |
| BalI | TGGCCA | 1 cut(s) | 468 |
| BanI | GGYRCC | 1 cut(s) | 479 |
| BanII | GRGCYC | 1 cut(s) | 604 |
| BauI | CACGAG | 1 cut(s) | 603 |
| BbsI | GAAGAC | 1 cut(s) | 365 |
| Bbv12I | GWGCWC | 1 cut(s) | 604 |
| BccI | CCATC | 5 cut(s) | 104, 231, 385, 470, 507 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BclI | TGATCA | 1 cut(s) | 577 |
| BcoDI | GTCTC | 2 cut(s) | 181, 385 |
| BfaI | CTAG | 2 cut(s) | 15, 227 |
| BfoI | RGCGCY | 2 cut(s) | 483, 524 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 2 cut(s) | 421, 481 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmsI | GCATC | 2 cut(s) | 331, 499 |
| BpiI | GAAGAC | 1 cut(s) | 365 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| Bpu10I | CCTNAGC | 1 cut(s) | 45 |
| BpuEI | CTTGAG | 1 cut(s) | 29 |
| BsaHI | GRCGYC | 1 cut(s) | 480 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseGI | GGATG | 2 cut(s) | 99, 127 |
| BseMII | CTCAG | 1 cut(s) | 59 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| Bsh1236I | CGCG | 1 cut(s) | 460 |
| BshFI | GGCC | 2 cut(s) | 71, 468 |
| BshNI | GGYRCC | 1 cut(s) | 479 |
| BsiHKAI | GWGCWC | 1 cut(s) | 604 |
| BsmAI | GTCTC | 2 cut(s) | 181, 385 |
| BsmBI | CGTCTC | 1 cut(s) | 385 |
| BsnI | GGCC | 2 cut(s) | 71, 468 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| Bsp1286I | GDGCHC | 1 cut(s) | 604 |
| Bsp143I | GATC | 5 cut(s) | 157, 333, 577, 673, 685 |
| BspACI | CCGC | 3 cut(s) | 68, 250, 399 |
| BspANI | GGCC | 2 cut(s) | 71, 468 |
| BspCNI | CTCAG | 1 cut(s) | 58 |
| BspFNI | CGCG | 1 cut(s) | 460 |
| BspLI | GGNNCC | 2 cut(s) | 421, 481 |
| BspPI | GGATC | 1 cut(s) | 152 |
| BspT107I | GGYRCC | 1 cut(s) | 479 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BsrBI | CCGCTC | 1 cut(s) | 68 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssMI | GATC | 5 cut(s) | 157, 333, 577, 673, 685 |
| BssNI | GRCGYC | 1 cut(s) | 480 |
| BssSI | CACGAG | 1 cut(s) | 603 |
| Bst2BI | CACGAG | 1 cut(s) | 603 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| Bst6I | CTCTTC | 1 cut(s) | 420 |
| BstACI | GRCGYC | 1 cut(s) | 480 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 3 cut(s) | 45, 73, 492 |
| BstEII | GGTNACC | 1 cut(s) | 394 |
| BstF5I | GGATG | 2 cut(s) | 99, 127 |
| BstFNI | CGCG | 1 cut(s) | 460 |
| BstH2I | RGCGCY | 2 cut(s) | 483, 524 |
| BstHHI | GCGC | 3 cut(s) | 462, 482, 523 |
| BstKTI | GATC | 5 cut(s) | 160, 336, 580, 676, 688 |
| BstMAI | GTCTC | 2 cut(s) | 181, 385 |
| BstMBI | GATC | 5 cut(s) | 157, 333, 577, 673, 685 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 56, 65, 518, 650 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstPI | GGTNACC | 1 cut(s) | 394 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstUI | CGCG | 1 cut(s) | 460 |
| BstV2I | GAAGAC | 1 cut(s) | 365 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 476 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| BsuRI | GGCC | 2 cut(s) | 71, 468 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 2 cut(s) | 99, 127 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CfoI | GCGC | 3 cut(s) | 462, 482, 523 |
| CseI | GACGC | 1 cut(s) | 561 |
| CviAII | CATG | 2 cut(s) | 416, 470 |
| DdeI | CTNAG | 3 cut(s) | 45, 73, 492 |
| DinI | GGCGCC | 1 cut(s) | 481 |
| DpnI | GATC | 5 cut(s) | 159, 335, 579, 675, 687 |
| DpnII | GATC | 5 cut(s) | 157, 333, 577, 673, 685 |
| DraIII | CACNNNGTG | 1 cut(s) | 661 |
| EaeI | YGGCCR | 1 cut(s) | 466 |
| Eam1104I | CTCTTC | 1 cut(s) | 420 |
| EarI | CTCTTC | 1 cut(s) | 420 |
| Ecl136II | GAGCTC | 1 cut(s) | 602 |
| Eco24I | GRGCYC | 1 cut(s) | 604 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco53kI | GAGCTC | 1 cut(s) | 602 |
| Eco91I | GGTNACC | 1 cut(s) | 394 |
| EcoICRI | GAGCTC | 1 cut(s) | 602 |
| EcoO65I | GGTNACC | 1 cut(s) | 394 |
| EcoRI | GAATTC | 1 cut(s) | 317 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 604 |
| EgeI | GGCGCC | 1 cut(s) | 481 |
| EheI | GGCGCC | 1 cut(s) | 481 |
| Esp3I | CGTCTC | 1 cut(s) | 385 |
| FaeI | CATG | 2 cut(s) | 419, 473 |
| FatI | CATG | 2 cut(s) | 415, 469 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| FbaI | TGATCA | 1 cut(s) | 577 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 2 cut(s) | 86, 134 |
| FriOI | GRGCYC | 1 cut(s) | 604 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 2 cut(s) | 15, 227 |
| GlaI | GCGC | 3 cut(s) | 461, 481, 522 |
| GluI | GCNGC | 1 cut(s) | 69 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeII | RGCGCY | 2 cut(s) | 483, 524 |
| HaeIII | GGCC | 2 cut(s) | 71, 468 |
| HgaI | GACGC | 1 cut(s) | 561 |
| HhaI | GCGC | 3 cut(s) | 462, 482, 523 |
| Hin1I | GRCGYC | 1 cut(s) | 480 |
| Hin1II | CATG | 2 cut(s) | 419, 473 |
| Hin6I | GCGC | 3 cut(s) | 460, 480, 521 |
| HinP1I | GCGC | 3 cut(s) | 460, 480, 521 |
| HinfI | GANTC | 5 cut(s) | 4, 109, 125, 209, 361 |
| HphI | GGTGA | 2 cut(s) | 328, 610 |
| Hpy166II | GTNNAC | 1 cut(s) | 433 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 577 |
| Hpy188III | TCNNGA | 6 cut(s) | 8, 221, 275, 561, 605, 677 |
| Hpy8I | GTNNAC | 1 cut(s) | 433 |
| HpyAV | CCTTC | 2 cut(s) | 159, 382 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4IV | ACGT | 3 cut(s) | 24, 201, 435 |
| HpyCH4V | TGCA | 1 cut(s) | 386 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 56, 65, 518, 650 |
| HpyF3I | CTNAG | 3 cut(s) | 45, 73, 492 |
| HpySE526I | ACGT | 3 cut(s) | 24, 201, 435 |
| Hsp92I | GRCGYC | 1 cut(s) | 480 |
| Hsp92II | CATG | 2 cut(s) | 419, 473 |
| HspAI | GCGC | 3 cut(s) | 460, 480, 521 |
| KasI | GGCGCC | 1 cut(s) | 479 |
| Ksp22I | TGATCA | 1 cut(s) | 577 |
| Kzo9I | GATC | 5 cut(s) | 157, 333, 577, 673, 685 |
| LmnI | GCTCC | 2 cut(s) | 135, 569 |
| LpnPI | CCDG | 7 cut(s) | 5, 32, 32, 146, 175, 234, 450 |
| LweI | GCATC | 2 cut(s) | 331, 499 |
| MaeI | CTAG | 2 cut(s) | 15, 227 |
| MaeII | ACGT | 3 cut(s) | 24, 201, 435 |
| MaeIII | GTNAC | 3 cut(s) | 206, 394, 616 |
| MalI | GATC | 5 cut(s) | 159, 335, 579, 675, 687 |
| MbiI | CCGCTC | 1 cut(s) | 68 |
| MboI | GATC | 5 cut(s) | 157, 333, 577, 673, 685 |
| MboII | GAAGA | 8 cut(s) | 164, 167, 197, 370, 437, 620, 683, 692 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MhlI | GDGCHC | 1 cut(s) | 604 |
| MlsI | TGGCCA | 1 cut(s) | 468 |
| MluCI | AATT | 1 cut(s) | 317 |
| MluNI | TGGCCA | 1 cut(s) | 468 |
| Mly113I | GGCGCC | 1 cut(s) | 480 |
| MlyI | GAGTC | 3 cut(s) | 103, 203, 355 |
| MnlI | CCTC | 6 cut(s) | 70, 257, 421, 441, 445, 534 |
| Mox20I | TGGCCA | 1 cut(s) | 468 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MscI | TGGCCA | 1 cut(s) | 468 |
| MseI | TTAA | 2 cut(s) | 303, 311 |
| MslI | CAYNNNNRTG | 4 cut(s) | 104, 120, 474, 504 |
| Msp20I | TGGCCA | 1 cut(s) | 468 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MvnI | CGCG | 1 cut(s) | 460 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 56, 65, 518, 650 |
| NarI | GGCGCC | 1 cut(s) | 480 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 5 cut(s) | 157, 333, 577, 673, 685 |
| NlaIII | CATG | 2 cut(s) | 419, 473 |
| NlaIV | GGNNCC | 2 cut(s) | 421, 481 |
| NmuCI | GTSAC | 2 cut(s) | 206, 616 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PfeI | GAWTC | 2 cut(s) | 4, 125 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PleI | GAGTC | 3 cut(s) | 103, 203, 355 |
| PluTI | GGCGCC | 1 cut(s) | 483 |
| PpsI | GAGTC | 3 cut(s) | 103, 203, 355 |
| Psp124BI | GAGCTC | 1 cut(s) | 604 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspEI | GGTNACC | 1 cut(s) | 394 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 2 cut(s) | 421, 481 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| RseI | CAYNNNNRTG | 4 cut(s) | 104, 120, 474, 504 |
| SacI | GAGCTC | 1 cut(s) | 604 |
| SaqAI | TTAA | 2 cut(s) | 303, 311 |
| SatI | GCNGC | 1 cut(s) | 69 |
| Sau3AI | GATC | 5 cut(s) | 157, 333, 577, 673, 685 |
| SchI | GAGTC | 3 cut(s) | 103, 203, 355 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 1 cut(s) | 604 |
| SfaNI | GCATC | 2 cut(s) | 331, 499 |
| SfoI | GGCGCC | 1 cut(s) | 481 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 104, 120, 474, 504 |
| SmlI | CTYRAG | 1 cut(s) | 8 |
| SmoI | CTYRAG | 1 cut(s) | 8 |
| Sse9I | AATT | 1 cut(s) | 317 |
| SsiI | CCGC | 3 cut(s) | 68, 250, 399 |
| SspDI | GGCGCC | 1 cut(s) | 479 |
| SspMI | CTAG | 2 cut(s) | 15, 227 |
| SstI | GAGCTC | 1 cut(s) | 604 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaiI | ACGT | 3 cut(s) | 27, 204, 438 |
| TaqI | TCGA | 3 cut(s) | 183, 540, 562 |
| TasI | AATT | 1 cut(s) | 317 |
| TauI | GCSGC | 1 cut(s) | 71 |
| TfiI | GAWTC | 2 cut(s) | 4, 125 |
| Tru1I | TTAA | 2 cut(s) | 303, 311 |
| Tru9I | TTAA | 2 cut(s) | 303, 311 |
| TseFI | GTSAC | 2 cut(s) | 206, 616 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 616 |
| TspDTI | ATGAA | 1 cut(s) | 165 |
| TspGWI | ACGGA | 1 cut(s) | 194 |
| XapI | RAATTY | 1 cut(s) | 317 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 2 cut(s) | 15, 227 |