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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 474, 797 |
| AccB1I | GGYRCC | 1 cut(s) | 248 |
| AccI | GTMKAC | 1 cut(s) | 496 |
| AccII | CGCG | 1 cut(s) | 348 |
| AccIII | TCCGGA | 1 cut(s) | 328 |
| AciI | CCGC | 2 cut(s) | 145, 630 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AclWI | GGATC | 2 cut(s) | 893, 906 |
| AcoI | YGGCCR | 1 cut(s) | 703 |
| AcuI | CTGAAG | 1 cut(s) | 511 |
| AcvI | CACGTG | 1 cut(s) | 13 |
| AcyI | GRCGYC | 2 cut(s) | 249, 711 |
| AfaI | GTAC | 2 cut(s) | 168, 272 |
| AfeI | AGCGCT | 2 cut(s) | 24, 784 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 701 |
| AgsI | TTSAA | 3 cut(s) | 160, 408, 959 |
| AjnI | CCWGG | 2 cut(s) | 472, 562 |
| AluBI | AGCT | 3 cut(s) | 188, 241, 263 |
| AluI | AGCT | 3 cut(s) | 188, 241, 263 |
| Alw26I | GTCTC | 2 cut(s) | 207, 874 |
| AlwI | GGATC | 2 cut(s) | 893, 906 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 596 |
| Aor13HI | TCCGGA | 1 cut(s) | 328 |
| Aor51HI | AGCGCT | 2 cut(s) | 24, 784 |
| AoxI | GGCC | 3 cut(s) | 627, 703, 831 |
| ApeKI | GCWGC | 4 cut(s) | 82, 590, 602, 605 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 5 cut(s) | 25, 251, 350, 602, 785 |
| AspS9I | GGNCC | 5 cut(s) | 627, 799, 832, 875, 950 |
| AvaII | GGWCC | 3 cut(s) | 799, 875, 950 |
| BalI | TGGCCA | 1 cut(s) | 705 |
| BamHI | GGATCC | 1 cut(s) | 898 |
| BanI | GGYRCC | 1 cut(s) | 248 |
| BbrPI | CACGTG | 1 cut(s) | 13 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| BbvI | GCAGC | 4 cut(s) | 94, 589, 602, 617 |
| BccI | CCATC | 6 cut(s) | 126, 202, 441, 662, 742, 970 |
| BciT130I | CCWGG | 2 cut(s) | 474, 564 |
| BcoDI | GTCTC | 2 cut(s) | 207, 874 |
| BfaI | CTAG | 1 cut(s) | 303 |
| BfmI | CTRYAG | 3 cut(s) | 340, 603, 786 |
| BfoI | RGCGCY | 4 cut(s) | 26, 252, 603, 786 |
| BisI | GCNGC | 5 cut(s) | 83, 591, 603, 606, 630 |
| BlsI | GCNGC | 5 cut(s) | 84, 592, 604, 607, 631 |
| Bme1390I | CCNGG | 2 cut(s) | 474, 564 |
| Bme18I | GGWCC | 3 cut(s) | 799, 875, 950 |
| BmgT120I | GGNCC | 5 cut(s) | 627, 799, 832, 875, 950 |
| BmiI | GGNNCC | 4 cut(s) | 250, 736, 834, 900 |
| BmrFI | CCNGG | 2 cut(s) | 474, 564 |
| BmsI | GCATC | 3 cut(s) | 477, 602, 640 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| Bpu10I | CCTNAGC | 1 cut(s) | 795 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaAI | YACGTR | 1 cut(s) | 13 |
| BsaBI | GATNNNNATC | 2 cut(s) | 451, 457 |
| BsaHI | GRCGYC | 2 cut(s) | 249, 711 |
| BsaJI | CCNNGG | 3 cut(s) | 309, 472, 684 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 744, 774 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 701 |
| Bse8I | GATNNNNATC | 2 cut(s) | 451, 457 |
| BseAI | TCCGGA | 1 cut(s) | 328 |
| BseBI | CCWGG | 2 cut(s) | 474, 564 |
| BseDI | CCNNGG | 3 cut(s) | 309, 472, 684 |
| BseGI | GGATG | 1 cut(s) | 517 |
| BseJI | GATNNNNATC | 2 cut(s) | 451, 457 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 701 |
| BseMII | CTCAG | 1 cut(s) | 809 |
| BseXI | GCAGC | 4 cut(s) | 94, 589, 602, 617 |
| Bsh1236I | CGCG | 1 cut(s) | 348 |
| BshFI | GGCC | 3 cut(s) | 629, 705, 833 |
| BshNI | GGYRCC | 1 cut(s) | 248 |
| BsiSI | CCGG | 1 cut(s) | 329 |
| BslFI | GGGAC | 3 cut(s) | 404, 480, 623 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 701 |
| BsmAI | GTCTC | 2 cut(s) | 207, 874 |
| BsmFI | GGGAC | 3 cut(s) | 404, 480, 623 |
| BsnI | GGCC | 3 cut(s) | 629, 705, 833 |
| Bsp13I | TCCGGA | 1 cut(s) | 328 |
| Bsp143I | GATC | 4 cut(s) | 440, 452, 458, 898 |
| Bsp19I | CCATGG | 1 cut(s) | 684 |
| BspACI | CCGC | 2 cut(s) | 145, 630 |
| BspANI | GGCC | 3 cut(s) | 629, 705, 833 |
| BspCNI | CTCAG | 1 cut(s) | 808 |
| BspEI | TCCGGA | 1 cut(s) | 328 |
| BspFNI | CGCG | 1 cut(s) | 348 |
| BspHI | TCATGA | 2 cut(s) | 235, 478 |
| BspLI | GGNNCC | 4 cut(s) | 250, 736, 834, 900 |
| BspMAI | CTGCAG | 1 cut(s) | 607 |
| BspPI | GGATC | 2 cut(s) | 893, 906 |
| BspQI | GCTCTTC | 1 cut(s) | 195 |
| BspT107I | GGYRCC | 1 cut(s) | 248 |
| BssECI | CCNNGG | 3 cut(s) | 309, 472, 684 |
| BssMI | GATC | 4 cut(s) | 440, 452, 458, 898 |
| BssNAI | GTATAC | 1 cut(s) | 497 |
| BssNI | GRCGYC | 2 cut(s) | 249, 711 |
| BssT1I | CCWWGG | 1 cut(s) | 684 |
| Bst1107I | GTATAC | 1 cut(s) | 497 |
| Bst2UI | CCWGG | 2 cut(s) | 474, 564 |
| Bst4CI | ACNGT | 1 cut(s) | 885 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstACI | GRCGYC | 2 cut(s) | 249, 711 |
| BstBAI | YACGTR | 1 cut(s) | 13 |
| BstDEI | CTNAG | 6 cut(s) | 318, 381, 462, 569, 795, 828 |
| BstDSI | CCRYGG | 2 cut(s) | 309, 684 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstF5I | GGATG | 1 cut(s) | 517 |
| BstFNI | CGCG | 1 cut(s) | 348 |
| BstH2I | RGCGCY | 4 cut(s) | 26, 252, 603, 786 |
| BstHHI | GCGC | 5 cut(s) | 25, 251, 350, 602, 785 |
| BstKTI | GATC | 4 cut(s) | 443, 455, 461, 901 |
| BstMAI | GTCTC | 2 cut(s) | 207, 874 |
| BstMBI | GATC | 4 cut(s) | 440, 452, 458, 898 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 417, 599, 659, 791, 830 |
| BstNI | CCWGG | 2 cut(s) | 474, 564 |
| BstSCI | CCNGG | 2 cut(s) | 472, 562 |
| BstSFI | CTRYAG | 3 cut(s) | 340, 603, 786 |
| BstUI | CGCG | 1 cut(s) | 348 |
| BstV1I | GCAGC | 4 cut(s) | 94, 589, 602, 617 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| BstX2I | RGATCY | 1 cut(s) | 898 |
| BstYI | RGATCY | 1 cut(s) | 898 |
| BstZ17I | GTATAC | 1 cut(s) | 497 |
| BsuRI | GGCC | 3 cut(s) | 629, 705, 833 |
| BtgI | CCRYGG | 2 cut(s) | 309, 684 |
| BtgZI | GCGATG | 1 cut(s) | 145 |
| BtsCI | GGATG | 1 cut(s) | 517 |
| CaiI | CAGNNNCTG | 1 cut(s) | 596 |
| CciI | TCATGA | 2 cut(s) | 235, 478 |
| CfoI | GCGC | 5 cut(s) | 25, 251, 350, 602, 785 |
| Cfr13I | GGNCC | 5 cut(s) | 627, 799, 832, 875, 950 |
| CseI | GACGC | 2 cut(s) | 719, 800 |
| Csp6I | GTAC | 2 cut(s) | 167, 271 |
| CviQI | GTAC | 2 cut(s) | 167, 271 |
| DdeI | CTNAG | 6 cut(s) | 318, 381, 462, 569, 795, 828 |
| DinI | GGCGCC | 1 cut(s) | 250 |
| DpnI | GATC | 4 cut(s) | 442, 454, 460, 900 |
| DpnII | GATC | 4 cut(s) | 440, 452, 458, 898 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 474, 797 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 474, 797 |
| EaeI | YGGCCR | 1 cut(s) | 703 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Eco130I | CCWWGG | 1 cut(s) | 684 |
| Eco32I | GATATC | 1 cut(s) | 943 |
| Eco47I | GGWCC | 3 cut(s) | 799, 875, 950 |
| Eco47III | AGCGCT | 2 cut(s) | 24, 784 |
| Eco57I | CTGAAG | 1 cut(s) | 511 |
| Eco72I | CACGTG | 1 cut(s) | 13 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoO109I | RGGNCCY | 1 cut(s) | 832 |
| EcoRII | CCWGG | 2 cut(s) | 472, 562 |
| EcoRV | GATATC | 1 cut(s) | 943 |
| EcoT14I | CCWWGG | 1 cut(s) | 684 |
| EgeI | GGCGCC | 1 cut(s) | 250 |
| EheI | GGCGCC | 1 cut(s) | 250 |
| ErhI | CCWWGG | 1 cut(s) | 684 |
| FaqI | GGGAC | 3 cut(s) | 404, 480, 623 |
| FblI | GTMKAC | 1 cut(s) | 496 |
| Fnu4HI | GCNGC | 5 cut(s) | 83, 591, 603, 606, 630 |
| FokI | GGATG | 1 cut(s) | 504 |
| Fsp4HI | GCNGC | 5 cut(s) | 83, 591, 603, 606, 630 |
| FspBI | CTAG | 1 cut(s) | 303 |
| GlaI | GCGC | 5 cut(s) | 24, 250, 349, 601, 784 |
| GluI | GCNGC | 5 cut(s) | 83, 591, 603, 606, 630 |
| HaeII | RGCGCY | 4 cut(s) | 26, 252, 603, 786 |
| HaeIII | GGCC | 3 cut(s) | 629, 705, 833 |
| HapII | CCGG | 1 cut(s) | 329 |
| HgaI | GACGC | 2 cut(s) | 719, 800 |
| HhaI | GCGC | 5 cut(s) | 25, 251, 350, 602, 785 |
| Hin1I | GRCGYC | 2 cut(s) | 249, 711 |
| Hin6I | GCGC | 5 cut(s) | 23, 249, 348, 600, 783 |
| HinP1I | GCGC | 5 cut(s) | 23, 249, 348, 600, 783 |
| HinfI | GANTC | 5 cut(s) | 104, 332, 547, 559, 930 |
| HpaII | CCGG | 1 cut(s) | 329 |
| Hpy166II | GTNNAC | 2 cut(s) | 497, 950 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 207, 530 |
| Hpy188III | TCNNGA | 8 cut(s) | 101, 236, 329, 399, 444, 456, 479, 966 |
| Hpy8I | GTNNAC | 2 cut(s) | 497, 950 |
| HpyAV | CCTTC | 2 cut(s) | 619, 705 |
| HpyCH4III | ACNGT | 1 cut(s) | 885 |
| HpyCH4IV | ACGT | 3 cut(s) | 12, 96, 258 |
| HpyCH4V | TGCA | 3 cut(s) | 590, 605, 849 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 417, 599, 659, 791, 830 |
| HpyF3I | CTNAG | 6 cut(s) | 318, 381, 462, 569, 795, 828 |
| HpySE526I | ACGT | 3 cut(s) | 12, 96, 258 |
| Hsp92I | GRCGYC | 2 cut(s) | 249, 711 |
| HspAI | GCGC | 5 cut(s) | 23, 249, 348, 600, 783 |
| KasI | GGCGCC | 1 cut(s) | 248 |
| Kpn2I | TCCGGA | 1 cut(s) | 328 |
| Kzo9I | GATC | 4 cut(s) | 440, 452, 458, 898 |
| LguI | GCTCTTC | 1 cut(s) | 195 |
| LmnI | GCTCC | 4 cut(s) | 30, 370, 495, 740 |
| LpnPI | CCDG | 9 cut(s) | 342, 384, 459, 486, 549, 576, 582, 782, 868 |
| Lsp1109I | GCAGC | 4 cut(s) | 94, 589, 602, 617 |
| LweI | GCATC | 3 cut(s) | 477, 602, 640 |
| MaeI | CTAG | 1 cut(s) | 303 |
| MaeII | ACGT | 3 cut(s) | 12, 96, 258 |
| MaeIII | GTNAC | 2 cut(s) | 101, 760 |
| MalI | GATC | 4 cut(s) | 442, 454, 460, 900 |
| MboI | GATC | 4 cut(s) | 440, 452, 458, 898 |
| MboII | GAAGA | 6 cut(s) | 62, 182, 301, 450, 517, 549 |
| MfeI | CAATTG | 1 cut(s) | 585 |
| MflI | RGATCY | 1 cut(s) | 898 |
| MlsI | TGGCCA | 1 cut(s) | 705 |
| MluCI | AATT | 9 cut(s) | 160, 277, 394, 422, 554, 585, 724, 869, 954 |
| MluNI | TGGCCA | 1 cut(s) | 705 |
| Mly113I | GGCGCC | 1 cut(s) | 249 |
| MlyI | GAGTC | 2 cut(s) | 98, 341 |
| MmeI | TCCRAC | 2 cut(s) | 762, 826 |
| MnlI | CCTC | 6 cut(s) | 40, 50, 152, 410, 846, 931 |
| Mox20I | TGGCCA | 1 cut(s) | 705 |
| MroI | TCCGGA | 1 cut(s) | 328 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 705 |
| MseI | TTAA | 1 cut(s) | 198 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 675, 967 |
| Msp20I | TGGCCA | 1 cut(s) | 705 |
| MspI | CCGG | 1 cut(s) | 329 |
| MspR9I | CCNGG | 2 cut(s) | 474, 564 |
| MunI | CAATTG | 1 cut(s) | 585 |
| MvaI | CCWGG | 2 cut(s) | 474, 564 |
| MvnI | CGCG | 1 cut(s) | 348 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 417, 599, 659, 791, 830 |
| NarI | GGCGCC | 1 cut(s) | 249 |
| NcoI | CCATGG | 1 cut(s) | 684 |
| NdeII | GATC | 4 cut(s) | 440, 452, 458, 898 |
| NlaIV | GGNNCC | 4 cut(s) | 250, 736, 834, 900 |
| NmuCI | GTSAC | 2 cut(s) | 101, 760 |
| PagI | TCATGA | 2 cut(s) | 235, 478 |
| PciSI | GCTCTTC | 1 cut(s) | 195 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 370 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 3 cut(s) | 547, 559, 930 |
| PfoI | TCCNGGA | 1 cut(s) | 562 |
| PkrI | GCNGC | 5 cut(s) | 84, 592, 604, 607, 631 |
| PleI | GAGTC | 2 cut(s) | 98, 340 |
| PluTI | GGCGCC | 1 cut(s) | 252 |
| PmaCI | CACGTG | 1 cut(s) | 13 |
| PmlI | CACGTG | 1 cut(s) | 13 |
| PpsI | GAGTC | 2 cut(s) | 98, 340 |
| Ppu21I | YACGTR | 1 cut(s) | 13 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| Psp6I | CCWGG | 2 cut(s) | 472, 562 |
| PspCI | CACGTG | 1 cut(s) | 13 |
| PspGI | CCWGG | 2 cut(s) | 472, 562 |
| PspN4I | GGNNCC | 4 cut(s) | 250, 736, 834, 900 |
| PspPI | GGNCC | 5 cut(s) | 627, 799, 832, 875, 950 |
| PstI | CTGCAG | 1 cut(s) | 607 |
| PstNI | CAGNNNCTG | 1 cut(s) | 596 |
| PsuI | RGATCY | 1 cut(s) | 898 |
| RsaI | GTAC | 2 cut(s) | 168, 272 |
| RsaNI | GTAC | 2 cut(s) | 167, 271 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 675, 967 |
| SapI | GCTCTTC | 1 cut(s) | 195 |
| SaqAI | TTAA | 1 cut(s) | 198 |
| SatI | GCNGC | 5 cut(s) | 83, 591, 603, 606, 630 |
| Sau3AI | GATC | 4 cut(s) | 440, 452, 458, 898 |
| Sau96I | GGNCC | 5 cut(s) | 627, 799, 832, 875, 950 |
| SchI | GAGTC | 2 cut(s) | 98, 341 |
| ScrFI | CCNGG | 2 cut(s) | 474, 564 |
| SetI | ASST | 9 cut(s) | 15, 42, 99, 190, 233, 243, 261, 265, 801 |
| SfaNI | GCATC | 3 cut(s) | 477, 602, 640 |
| SfcI | CTRYAG | 3 cut(s) | 340, 603, 786 |
| SfoI | GGCGCC | 1 cut(s) | 250 |
| SinI | GGWCC | 3 cut(s) | 799, 875, 950 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 675, 967 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 9 cut(s) | 160, 277, 394, 422, 554, 585, 724, 869, 954 |
| SsiI | CCGC | 2 cut(s) | 145, 630 |
| SspDI | GGCGCC | 1 cut(s) | 248 |
| SspMI | CTAG | 1 cut(s) | 303 |
| StyD4I | CCNGG | 2 cut(s) | 472, 562 |
| StyI | CCWWGG | 1 cut(s) | 684 |
| TaaI | ACNGT | 1 cut(s) | 885 |
| TaiI | ACGT | 3 cut(s) | 15, 99, 261 |
| TaqI | TCGA | 2 cut(s) | 457, 550 |
| TaqII | GACCGA | 1 cut(s) | 892 |
| TasI | AATT | 9 cut(s) | 160, 277, 394, 422, 554, 585, 724, 869, 954 |
| TatI | WGTACW | 1 cut(s) | 166 |
| TauI | GCSGC | 1 cut(s) | 632 |
| TfiI | GAWTC | 3 cut(s) | 547, 559, 930 |
| Tru1I | TTAA | 1 cut(s) | 198 |
| Tru9I | TTAA | 1 cut(s) | 198 |
| TseFI | GTSAC | 2 cut(s) | 101, 760 |
| TseI | GCWGC | 4 cut(s) | 82, 590, 602, 605 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 760 |
| TspDTI | ATGAA | 4 cut(s) | 33, 224, 269, 498 |
| TspGWI | ACGGA | 2 cut(s) | 482, 906 |
| VpaK11BI | GGWCC | 3 cut(s) | 799, 875, 950 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 63, 745 |
| XmiI | GTMKAC | 1 cut(s) | 496 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 303 |