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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 456, 614 |
| AccI | GTMKAC | 1 cut(s) | 485 |
| AccIII | TCCGGA | 1 cut(s) | 421 |
| AciI | CCGC | 2 cut(s) | 133, 756 |
| AclWI | GGATC | 2 cut(s) | 393, 497 |
| AcoI | YGGCCR | 1 cut(s) | 601 |
| AcsI | RAATTY | 1 cut(s) | 200 |
| AcuI | CTGAAG | 1 cut(s) | 192 |
| AcyI | GRCGYC | 1 cut(s) | 615 |
| AdeI | CACNNNGTG | 1 cut(s) | 796 |
| AgsI | TTSAA | 2 cut(s) | 148, 652 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 4 cut(s) | 334, 344, 737, 788 |
| AluI | AGCT | 4 cut(s) | 334, 344, 737, 788 |
| Alw21I | GWGCWC | 3 cut(s) | 336, 739, 790 |
| Alw26I | GTCTC | 1 cut(s) | 64 |
| AlwI | GGATC | 2 cut(s) | 393, 497 |
| Aor13HI | TCCGGA | 1 cut(s) | 421 |
| AoxI | GGCC | 1 cut(s) | 601 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 177, 417 |
| AspLEI | GCGC | 2 cut(s) | 617, 658 |
| AsuHPI | GGTGA | 1 cut(s) | 745 |
| BaeGI | GKGCMC | 1 cut(s) | 724 |
| BalI | TGGCCA | 1 cut(s) | 603 |
| BanI | GGYRCC | 2 cut(s) | 456, 614 |
| BanII | GRGCYC | 3 cut(s) | 336, 739, 790 |
| BauI | CACGAG | 1 cut(s) | 738 |
| BbsI | GAAGAC | 2 cut(s) | 45, 248 |
| Bbv12I | GWGCWC | 3 cut(s) | 336, 739, 790 |
| BccI | CCATC | 4 cut(s) | 114, 263, 268, 642 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 287, 321 |
| BclI | TGATCA | 1 cut(s) | 712 |
| BcoDI | GTCTC | 1 cut(s) | 64 |
| BfaI | CTAG | 1 cut(s) | 824 |
| BfoI | RGCGCY | 2 cut(s) | 618, 659 |
| BmiI | GGNNCC | 3 cut(s) | 458, 557, 616 |
| BmsI | GCATC | 1 cut(s) | 634 |
| BpiI | GAAGAC | 2 cut(s) | 45, 248 |
| Bsa29I | ATCGAT | 1 cut(s) | 297 |
| BsaHI | GRCGYC | 1 cut(s) | 615 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| BsaJI | CCNNGG | 1 cut(s) | 402 |
| BsaWI | WCCGGW | 1 cut(s) | 421 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| BseAI | TCCGGA | 1 cut(s) | 421 |
| BseCI | ATCGAT | 1 cut(s) | 297 |
| BseDI | CCNNGG | 1 cut(s) | 402 |
| BseGI | GGATG | 1 cut(s) | 255 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BseRI | GAGGAG | 1 cut(s) | 798 |
| BseSI | GKGCMC | 1 cut(s) | 724 |
| BshFI | GGCC | 1 cut(s) | 603 |
| BshNI | GGYRCC | 2 cut(s) | 456, 614 |
| BshVI | ATCGAT | 1 cut(s) | 297 |
| BsiHKAI | GWGCWC | 3 cut(s) | 336, 739, 790 |
| BsiSI | CCGG | 1 cut(s) | 422 |
| BsmAI | GTCTC | 1 cut(s) | 64 |
| BsnI | GGCC | 1 cut(s) | 603 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| Bsp1286I | GDGCHC | 4 cut(s) | 336, 724, 739, 790 |
| Bsp13I | TCCGGA | 1 cut(s) | 421 |
| Bsp143I | GATC | 6 cut(s) | 216, 398, 502, 712, 808, 820 |
| BspACI | CCGC | 2 cut(s) | 133, 756 |
| BspANI | GGCC | 1 cut(s) | 603 |
| BspDI | ATCGAT | 1 cut(s) | 297 |
| BspEI | TCCGGA | 1 cut(s) | 421 |
| BspHI | TCATGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 3 cut(s) | 458, 557, 616 |
| BspPI | GGATC | 2 cut(s) | 393, 497 |
| BspT107I | GGYRCC | 2 cut(s) | 456, 614 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssECI | CCNNGG | 1 cut(s) | 402 |
| BssMI | GATC | 6 cut(s) | 216, 398, 502, 712, 808, 820 |
| BssNAI | GTATAC | 1 cut(s) | 486 |
| BssNI | GRCGYC | 1 cut(s) | 615 |
| BssSI | CACGAG | 1 cut(s) | 738 |
| Bst1107I | GTATAC | 1 cut(s) | 486 |
| Bst2BI | CACGAG | 1 cut(s) | 738 |
| Bst6I | CTCTTC | 1 cut(s) | 556 |
| BstACI | GRCGYC | 1 cut(s) | 615 |
| BstDEI | CTNAG | 4 cut(s) | 282, 447, 479, 627 |
| BstDSI | CCRYGG | 1 cut(s) | 402 |
| BstEII | GGTNACC | 1 cut(s) | 530 |
| BstF5I | GGATG | 1 cut(s) | 255 |
| BstH2I | RGCGCY | 2 cut(s) | 618, 659 |
| BstHHI | GCGC | 2 cut(s) | 617, 658 |
| BstKTI | GATC | 6 cut(s) | 219, 401, 505, 715, 811, 823 |
| BstMAI | GTCTC | 1 cut(s) | 64 |
| BstMBI | GATC | 6 cut(s) | 216, 398, 502, 712, 808, 820 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 653, 764, 785 |
| BstPI | GGTNACC | 1 cut(s) | 530 |
| BstSLI | GKGCMC | 1 cut(s) | 724 |
| BstV2I | GAAGAC | 2 cut(s) | 45, 248 |
| BstX2I | RGATCY | 1 cut(s) | 398 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 611 |
| BstYI | RGATCY | 1 cut(s) | 398 |
| BstZ17I | GTATAC | 1 cut(s) | 486 |
| Bsu15I | ATCGAT | 1 cut(s) | 297 |
| BsuRI | GGCC | 1 cut(s) | 603 |
| BsuTUI | ATCGAT | 1 cut(s) | 297 |
| BtgI | CCRYGG | 1 cut(s) | 402 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 1 cut(s) | 255 |
| CciI | TCATGA | 1 cut(s) | 328 |
| CfoI | GCGC | 2 cut(s) | 617, 658 |
| ClaI | ATCGAT | 1 cut(s) | 297 |
| CviAII | CATG | 3 cut(s) | 329, 365, 605 |
| CviJI | RGCY | 8 cut(s) | 52, 129, 334, 344, 603, 633, 737, 788 |
| CviKI_1 | RGCY | 8 cut(s) | 52, 129, 334, 344, 603, 633, 737, 788 |
| DdeI | CTNAG | 4 cut(s) | 282, 447, 479, 627 |
| DinI | GGCGCC | 1 cut(s) | 616 |
| DpnI | GATC | 6 cut(s) | 218, 400, 504, 714, 810, 822 |
| DpnII | GATC | 6 cut(s) | 216, 398, 502, 712, 808, 820 |
| DraIII | CACNNNGTG | 1 cut(s) | 796 |
| EaeI | YGGCCR | 1 cut(s) | 601 |
| Eam1104I | CTCTTC | 1 cut(s) | 556 |
| EarI | CTCTTC | 1 cut(s) | 556 |
| Ecl136II | GAGCTC | 3 cut(s) | 334, 737, 788 |
| Eco24I | GRGCYC | 3 cut(s) | 336, 739, 790 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| Eco53kI | GAGCTC | 3 cut(s) | 334, 737, 788 |
| Eco57I | CTGAAG | 1 cut(s) | 192 |
| Eco91I | GGTNACC | 1 cut(s) | 530 |
| EcoICRI | GAGCTC | 3 cut(s) | 334, 737, 788 |
| EcoO65I | GGTNACC | 1 cut(s) | 530 |
| EcoRI | GAATTC | 1 cut(s) | 200 |
| EcoT38I | GRGCYC | 3 cut(s) | 336, 739, 790 |
| EgeI | GGCGCC | 1 cut(s) | 616 |
| EheI | GGCGCC | 1 cut(s) | 616 |
| FaeI | CATG | 3 cut(s) | 332, 368, 608 |
| FatI | CATG | 3 cut(s) | 328, 364, 604 |
| FbaI | TGATCA | 1 cut(s) | 712 |
| FblI | GTMKAC | 1 cut(s) | 485 |
| FokI | GGATG | 1 cut(s) | 242 |
| FriOI | GRGCYC | 3 cut(s) | 336, 739, 790 |
| FspBI | CTAG | 1 cut(s) | 824 |
| GlaI | GCGC | 2 cut(s) | 616, 657 |
| HaeII | RGCGCY | 2 cut(s) | 618, 659 |
| HaeIII | GGCC | 1 cut(s) | 603 |
| HapII | CCGG | 1 cut(s) | 422 |
| HhaI | GCGC | 2 cut(s) | 617, 658 |
| Hin1I | GRCGYC | 1 cut(s) | 615 |
| Hin1II | CATG | 3 cut(s) | 332, 368, 608 |
| Hin6I | GCGC | 2 cut(s) | 615, 656 |
| HinP1I | GCGC | 2 cut(s) | 615, 656 |
| HinfI | GANTC | 5 cut(s) | 92, 244, 294, 315, 425 |
| HpaII | CCGG | 1 cut(s) | 422 |
| HphI | GGTGA | 1 cut(s) | 745 |
| Hpy166II | GTNNAC | 2 cut(s) | 486, 569 |
| Hpy188I | TCNGA | 3 cut(s) | 172, 502, 712 |
| Hpy188III | TCNNGA | 9 cut(s) | 158, 329, 396, 422, 492, 696, 740, 812, 824 |
| Hpy8I | GTNNAC | 2 cut(s) | 486, 569 |
| HpyAV | CCTTC | 2 cut(s) | 42, 521 |
| HpyCH4IV | ACGT | 3 cut(s) | 84, 108, 571 |
| HpyCH4V | TGCA | 2 cut(s) | 269, 308 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 653, 764, 785 |
| HpyF3I | CTNAG | 4 cut(s) | 282, 447, 479, 627 |
| HpySE526I | ACGT | 3 cut(s) | 84, 108, 571 |
| Hsp92I | GRCGYC | 1 cut(s) | 615 |
| Hsp92II | CATG | 3 cut(s) | 332, 368, 608 |
| HspAI | GCGC | 2 cut(s) | 615, 656 |
| KasI | GGCGCC | 1 cut(s) | 614 |
| Kpn2I | TCCGGA | 1 cut(s) | 421 |
| Ksp22I | TGATCA | 1 cut(s) | 712 |
| Kzo9I | GATC | 6 cut(s) | 216, 398, 502, 712, 808, 820 |
| LmnI | GCTCC | 3 cut(s) | 18, 341, 785 |
| LpnPI | CCDG | 5 cut(s) | 29, 58, 435, 477, 585 |
| LweI | GCATC | 1 cut(s) | 634 |
| MaeI | CTAG | 1 cut(s) | 824 |
| MaeII | ACGT | 3 cut(s) | 84, 108, 571 |
| MaeIII | GTNAC | 4 cut(s) | 89, 301, 530, 751 |
| MalI | GATC | 6 cut(s) | 218, 400, 504, 714, 810, 822 |
| MboI | GATC | 6 cut(s) | 216, 398, 502, 712, 808, 820 |
| MboII | GAAGA | 9 cut(s) | 47, 50, 80, 253, 394, 573, 755, 818, 827 |
| MflI | RGATCY | 1 cut(s) | 398 |
| MhlI | GDGCHC | 4 cut(s) | 336, 724, 739, 790 |
| MlsI | TGGCCA | 1 cut(s) | 603 |
| MluCI | AATT | 4 cut(s) | 7, 200, 391, 430 |
| MluNI | TGGCCA | 1 cut(s) | 603 |
| Mly113I | GGCGCC | 1 cut(s) | 615 |
| MlyI | GAGTC | 2 cut(s) | 86, 238 |
| MnlI | CCTC | 9 cut(s) | 140, 446, 454, 557, 577, 581, 607, 669, 776 |
| Mox20I | TGGCCA | 1 cut(s) | 603 |
| MroI | TCCGGA | 1 cut(s) | 421 |
| MroXI | GAANNNNTTC | 2 cut(s) | 177, 417 |
| MscI | TGGCCA | 1 cut(s) | 603 |
| MseI | TTAA | 3 cut(s) | 186, 194, 674 |
| MslI | CAYNNNNRTG | 2 cut(s) | 609, 639 |
| Msp20I | TGGCCA | 1 cut(s) | 603 |
| MspI | CCGG | 1 cut(s) | 422 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 653, 764, 785 |
| NarI | GGCGCC | 1 cut(s) | 615 |
| NdeII | GATC | 6 cut(s) | 216, 398, 502, 712, 808, 820 |
| NlaIII | CATG | 3 cut(s) | 332, 368, 608 |
| NlaIV | GGNNCC | 3 cut(s) | 458, 557, 616 |
| NmuCI | GTSAC | 2 cut(s) | 89, 751 |
| PagI | TCATGA | 1 cut(s) | 328 |
| PdmI | GAANNNNTTC | 2 cut(s) | 177, 417 |
| PfeI | GAWTC | 3 cut(s) | 294, 315, 425 |
| PleI | GAGTC | 2 cut(s) | 86, 238 |
| PluTI | GGCGCC | 1 cut(s) | 618 |
| PpsI | GAGTC | 2 cut(s) | 86, 238 |
| Psp124BI | GAGCTC | 3 cut(s) | 336, 739, 790 |
| PspEI | GGTNACC | 1 cut(s) | 530 |
| PspN4I | GGNNCC | 3 cut(s) | 458, 557, 616 |
| PsuI | RGATCY | 1 cut(s) | 398 |
| RseI | CAYNNNNRTG | 2 cut(s) | 609, 639 |
| SacI | GAGCTC | 3 cut(s) | 336, 739, 790 |
| SaqAI | TTAA | 3 cut(s) | 186, 194, 674 |
| Sau3AI | GATC | 6 cut(s) | 216, 398, 502, 712, 808, 820 |
| SchI | GAGTC | 2 cut(s) | 86, 238 |
| SduI | GDGCHC | 4 cut(s) | 336, 724, 739, 790 |
| SfaNI | GCATC | 1 cut(s) | 634 |
| SfoI | GGCGCC | 1 cut(s) | 616 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 609, 639 |
| Sse9I | AATT | 4 cut(s) | 7, 200, 391, 430 |
| SsiI | CCGC | 2 cut(s) | 133, 756 |
| SspDI | GGCGCC | 1 cut(s) | 614 |
| SspMI | CTAG | 1 cut(s) | 824 |
| SstI | GAGCTC | 3 cut(s) | 336, 739, 790 |
| TaiI | ACGT | 3 cut(s) | 87, 111, 574 |
| TaqI | TCGA | 5 cut(s) | 66, 292, 297, 395, 697 |
| TasI | AATT | 4 cut(s) | 7, 200, 391, 430 |
| TfiI | GAWTC | 3 cut(s) | 294, 315, 425 |
| Tru1I | TTAA | 3 cut(s) | 186, 194, 674 |
| Tru9I | TTAA | 3 cut(s) | 186, 194, 674 |
| TseFI | GTSAC | 2 cut(s) | 89, 751 |
| Tsp45I | GTSAC | 2 cut(s) | 89, 751 |
| TspDTI | ATGAA | 4 cut(s) | 44, 48, 317, 362 |
| TspGWI | ACGGA | 2 cut(s) | 391, 568 |
| XapI | RAATTY | 1 cut(s) | 200 |
| XbaI | TCTAGA | 1 cut(s) | 823 |
| XmiI | GTMKAC | 1 cut(s) | 485 |
| XmnI | GAANNNNTTC | 2 cut(s) | 177, 417 |
| XspI | CTAG | 1 cut(s) | 824 |