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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 141, 186 |
| AccB1I | GGYRCC | 2 cut(s) | 383, 446 |
| AccBSI | CCGCTC | 1 cut(s) | 214 |
| AciI | CCGC | 2 cut(s) | 214, 262 |
| AclWI | GGATC | 2 cut(s) | 74, 535 |
| AcuI | CTGAAG | 1 cut(s) | 69 |
| AcvI | CACGTG | 1 cut(s) | 323 |
| AcyI | GRCGYC | 2 cut(s) | 384, 447 |
| AfaI | GTAC | 3 cut(s) | 25, 478, 620 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 200, 271, 324, 353, 460 |
| AflII | CTTAAG | 1 cut(s) | 221 |
| AflIII | ACRYGT | 2 cut(s) | 302, 320 |
| AgsI | TTSAA | 3 cut(s) | 547, 579, 682 |
| AjnI | CCWGG | 1 cut(s) | 346 |
| AluBI | AGCT | 3 cut(s) | 85, 107, 575 |
| AluI | AGCT | 3 cut(s) | 85, 107, 575 |
| Alw21I | GWGCWC | 1 cut(s) | 702 |
| Alw44I | GTGCAC | 1 cut(s) | 698 |
| AlwI | GGATC | 2 cut(s) | 74, 535 |
| AoxI | GGCC | 1 cut(s) | 149 |
| ApaLI | GTGCAC | 1 cut(s) | 698 |
| ApeKI | GCWGC | 1 cut(s) | 710 |
| AspLEI | GCGC | 3 cut(s) | 365, 386, 449 |
| AspS9I | GGNCC | 3 cut(s) | 150, 251, 598 |
| AsuHPI | GGTGA | 1 cut(s) | 658 |
| AvaII | GGWCC | 2 cut(s) | 251, 598 |
| AxyI | CCTNAGG | 1 cut(s) | 602 |
| BaeGI | GKGCMC | 1 cut(s) | 702 |
| BanI | GGYRCC | 2 cut(s) | 383, 446 |
| BauI | CACGAG | 5 cut(s) | 70, 128, 393, 414, 435 |
| BbrPI | CACGTG | 1 cut(s) | 323 |
| Bbv12I | GWGCWC | 1 cut(s) | 702 |
| BbvI | GCAGC | 1 cut(s) | 697 |
| BccI | CCATC | 1 cut(s) | 641 |
| BciT130I | CCWGG | 1 cut(s) | 348 |
| BciVI | GTATCC | 1 cut(s) | 353 |
| BfaI | CTAG | 2 cut(s) | 459, 572 |
| BfmI | CTRYAG | 2 cut(s) | 102, 711 |
| BfoI | RGCGCY | 3 cut(s) | 366, 387, 450 |
| BfrI | CTTAAG | 1 cut(s) | 221 |
| BfuI | GTATCC | 1 cut(s) | 353 |
| BisI | GCNGC | 1 cut(s) | 711 |
| BlsI | GCNGC | 1 cut(s) | 712 |
| Bme1390I | CCNGG | 1 cut(s) | 348 |
| Bme18I | GGWCC | 2 cut(s) | 251, 598 |
| BmgT120I | GGNCC | 3 cut(s) | 150, 251, 598 |
| BmiI | GGNNCC | 6 cut(s) | 218, 385, 406, 427, 448, 599 |
| BmrFI | CCNGG | 1 cut(s) | 348 |
| BmsI | GCATC | 1 cut(s) | 697 |
| Bsa29I | ATCGAT | 1 cut(s) | 520 |
| BsaAI | YACGTR | 1 cut(s) | 323 |
| BsaBI | GATNNNNATC | 2 cut(s) | 526, 660 |
| BsaHI | GRCGYC | 2 cut(s) | 384, 447 |
| BsaJI | CCNNGG | 4 cut(s) | 346, 387, 408, 429 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 319, 349 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 200, 271, 324, 353, 460 |
| Bse21I | CCTNAGG | 1 cut(s) | 602 |
| Bse3DI | GCAATG | 2 cut(s) | 319, 557 |
| Bse8I | GATNNNNATC | 2 cut(s) | 526, 660 |
| BseBI | CCWGG | 1 cut(s) | 348 |
| BseCI | ATCGAT | 1 cut(s) | 520 |
| BseDI | CCNNGG | 4 cut(s) | 346, 387, 408, 429 |
| BseGI | GGATG | 2 cut(s) | 248, 712 |
| BseJI | GATNNNNATC | 2 cut(s) | 526, 660 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 200, 271, 324, 353, 460 |
| BseMI | GCAATG | 2 cut(s) | 319, 557 |
| BseMII | CTCAG | 2 cut(s) | 99, 593 |
| BseRI | GAGGAG | 2 cut(s) | 417, 438 |
| BseSI | GKGCMC | 1 cut(s) | 702 |
| BseXI | GCAGC | 1 cut(s) | 697 |
| BsgI | GTGCAG | 1 cut(s) | 28 |
| BshFI | GGCC | 1 cut(s) | 151 |
| BshNI | GGYRCC | 2 cut(s) | 383, 446 |
| BshVI | ATCGAT | 1 cut(s) | 520 |
| BsiHKAI | GWGCWC | 1 cut(s) | 702 |
| BslFI | GGGAC | 1 cut(s) | 611 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 200, 271, 324, 353, 460 |
| BsmFI | GGGAC | 1 cut(s) | 611 |
| BsmI | GAATGC | 1 cut(s) | 168 |
| BsnI | GGCC | 1 cut(s) | 151 |
| Bsp1286I | GDGCHC | 1 cut(s) | 702 |
| Bsp143I | GATC | 2 cut(s) | 66, 527 |
| Bsp19I | CCATGG | 3 cut(s) | 387, 408, 429 |
| BspACI | CCGC | 2 cut(s) | 214, 262 |
| BspANI | GGCC | 1 cut(s) | 151 |
| BspCNI | CTCAG | 2 cut(s) | 100, 594 |
| BspDI | ATCGAT | 1 cut(s) | 520 |
| BspHI | TCATGA | 1 cut(s) | 172 |
| BspLI | GGNNCC | 6 cut(s) | 218, 385, 406, 427, 448, 599 |
| BspMAI | CTGCAG | 1 cut(s) | 715 |
| BspPI | GGATC | 2 cut(s) | 74, 535 |
| BspT107I | GGYRCC | 2 cut(s) | 383, 446 |
| BspTI | CTTAAG | 1 cut(s) | 221 |
| BsrBI | CCGCTC | 1 cut(s) | 214 |
| BsrDI | GCAATG | 2 cut(s) | 319, 557 |
| BssECI | CCNNGG | 4 cut(s) | 346, 387, 408, 429 |
| BssMI | GATC | 2 cut(s) | 66, 527 |
| BssNI | GRCGYC | 2 cut(s) | 384, 447 |
| BssSI | CACGAG | 5 cut(s) | 70, 128, 393, 414, 435 |
| BssT1I | CCWWGG | 3 cut(s) | 387, 408, 429 |
| Bst2BI | CACGAG | 5 cut(s) | 70, 128, 393, 414, 435 |
| Bst2UI | CCWGG | 1 cut(s) | 348 |
| BstACI | GRCGYC | 2 cut(s) | 384, 447 |
| BstAFI | CTTAAG | 1 cut(s) | 221 |
| BstBAI | YACGTR | 1 cut(s) | 323 |
| BstC8I | GCNNGC | 2 cut(s) | 562, 566 |
| BstDEI | CTNAG | 2 cut(s) | 108, 602 |
| BstDSI | CCRYGG | 3 cut(s) | 387, 408, 429 |
| BstF5I | GGATG | 2 cut(s) | 248, 712 |
| BstH2I | RGCGCY | 3 cut(s) | 366, 387, 450 |
| BstHHI | GCGC | 3 cut(s) | 365, 386, 449 |
| BstKTI | GATC | 2 cut(s) | 69, 530 |
| BstMBI | GATC | 2 cut(s) | 66, 527 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 561 |
| BstNI | CCWGG | 1 cut(s) | 348 |
| BstNSI | RCATGY | 1 cut(s) | 306 |
| BstSCI | CCNGG | 1 cut(s) | 346 |
| BstSFI | CTRYAG | 2 cut(s) | 102, 711 |
| BstSLI | GKGCMC | 1 cut(s) | 702 |
| BstV1I | GCAGC | 1 cut(s) | 697 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 290 |
| Bsu15I | ATCGAT | 1 cut(s) | 520 |
| Bsu36I | CCTNAGG | 1 cut(s) | 602 |
| BsuI | GTATCC | 1 cut(s) | 353 |
| BsuRI | GGCC | 1 cut(s) | 151 |
| BsuTUI | ATCGAT | 1 cut(s) | 520 |
| BtgI | CCRYGG | 3 cut(s) | 387, 408, 429 |
| BtsCI | GGATG | 2 cut(s) | 248, 712 |
| BtsIMutI | CAGTG | 1 cut(s) | 45 |
| Cac8I | GCNNGC | 2 cut(s) | 562, 566 |
| CciI | TCATGA | 1 cut(s) | 172 |
| CfoI | GCGC | 3 cut(s) | 365, 386, 449 |
| Cfr13I | GGNCC | 3 cut(s) | 150, 251, 598 |
| ClaI | ATCGAT | 1 cut(s) | 520 |
| CseI | GACGC | 1 cut(s) | 213 |
| Csp6I | GTAC | 3 cut(s) | 24, 477, 619 |
| CviAII | CATG | 7 cut(s) | 116, 173, 303, 374, 388, 409, 430 |
| CviQI | GTAC | 3 cut(s) | 24, 477, 619 |
| DdeI | CTNAG | 2 cut(s) | 108, 602 |
| DinI | GGCGCC | 2 cut(s) | 385, 448 |
| DpnI | GATC | 2 cut(s) | 68, 529 |
| DpnII | GATC | 2 cut(s) | 66, 527 |
| Eco130I | CCWWGG | 3 cut(s) | 387, 408, 429 |
| Eco47I | GGWCC | 2 cut(s) | 251, 598 |
| Eco57I | CTGAAG | 1 cut(s) | 69 |
| Eco72I | CACGTG | 1 cut(s) | 323 |
| Eco81I | CCTNAGG | 1 cut(s) | 602 |
| EcoO109I | RGGNCCY | 1 cut(s) | 598 |
| EcoRII | CCWGG | 1 cut(s) | 346 |
| EcoT14I | CCWWGG | 3 cut(s) | 387, 408, 429 |
| EgeI | GGCGCC | 2 cut(s) | 385, 448 |
| EheI | GGCGCC | 2 cut(s) | 385, 448 |
| ErhI | CCWWGG | 3 cut(s) | 387, 408, 429 |
| FaeI | CATG | 7 cut(s) | 119, 176, 306, 377, 391, 412, 433 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 606, 638 |
| FaqI | GGGAC | 1 cut(s) | 611 |
| FatI | CATG | 7 cut(s) | 115, 172, 302, 373, 387, 408, 429 |
| Fnu4HI | GCNGC | 1 cut(s) | 711 |
| FokI | GGATG | 2 cut(s) | 255, 719 |
| Fsp4HI | GCNGC | 1 cut(s) | 711 |
| FspBI | CTAG | 2 cut(s) | 459, 572 |
| GlaI | GCGC | 3 cut(s) | 364, 385, 448 |
| GluI | GCNGC | 1 cut(s) | 711 |
| HaeII | RGCGCY | 3 cut(s) | 366, 387, 450 |
| HaeIII | GGCC | 1 cut(s) | 151 |
| HgaI | GACGC | 1 cut(s) | 213 |
| HhaI | GCGC | 3 cut(s) | 365, 386, 449 |
| Hin1I | GRCGYC | 2 cut(s) | 384, 447 |
| Hin1II | CATG | 7 cut(s) | 119, 176, 306, 377, 391, 412, 433 |
| Hin6I | GCGC | 3 cut(s) | 363, 384, 447 |
| HinP1I | GCGC | 3 cut(s) | 363, 384, 447 |
| HphI | GGTGA | 1 cut(s) | 658 |
| Hpy166II | GTNNAC | 3 cut(s) | 479, 619, 700 |
| Hpy188III | TCNNGA | 4 cut(s) | 70, 130, 173, 579 |
| Hpy8I | GTNNAC | 3 cut(s) | 479, 619, 700 |
| HpyAV | CCTTC | 2 cut(s) | 269, 465 |
| HpyCH4IV | ACGT | 2 cut(s) | 322, 475 |
| HpyCH4V | TGCA | 6 cut(s) | 45, 191, 555, 626, 700, 713 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 561 |
| HpyF3I | CTNAG | 2 cut(s) | 108, 602 |
| HpySE526I | ACGT | 2 cut(s) | 322, 475 |
| Hsp92I | GRCGYC | 2 cut(s) | 384, 447 |
| Hsp92II | CATG | 7 cut(s) | 119, 176, 306, 377, 391, 412, 433 |
| HspAI | GCGC | 3 cut(s) | 363, 384, 447 |
| KasI | GGCGCC | 2 cut(s) | 383, 446 |
| Kzo9I | GATC | 2 cut(s) | 66, 527 |
| LmnI | GCTCC | 4 cut(s) | 211, 404, 425, 607 |
| LpnPI | CCDG | 7 cut(s) | 45, 271, 333, 360, 571, 580, 614 |
| Lsp1109I | GCAGC | 1 cut(s) | 697 |
| LweI | GCATC | 1 cut(s) | 697 |
| MaeI | CTAG | 2 cut(s) | 459, 572 |
| MaeII | ACGT | 2 cut(s) | 322, 475 |
| MalI | GATC | 2 cut(s) | 68, 529 |
| MbiI | CCGCTC | 1 cut(s) | 214 |
| MboI | GATC | 2 cut(s) | 66, 527 |
| MboII | GAAGA | 6 cut(s) | 145, 641, 650, 653, 656, 701 |
| MhlI | GDGCHC | 1 cut(s) | 702 |
| MluCI | AATT | 4 cut(s) | 136, 142, 181, 485 |
| Mly113I | GGCGCC | 2 cut(s) | 384, 447 |
| MseI | TTAA | 3 cut(s) | 146, 222, 488 |
| MslI | CAYNNNNRTG | 3 cut(s) | 128, 522, 705 |
| MspCI | CTTAAG | 1 cut(s) | 221 |
| MspR9I | CCNGG | 1 cut(s) | 348 |
| Mva1269I | GAATGC | 1 cut(s) | 168 |
| MvaI | CCWGG | 1 cut(s) | 348 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 561 |
| NarI | GGCGCC | 2 cut(s) | 384, 447 |
| NcoI | CCATGG | 3 cut(s) | 387, 408, 429 |
| NdeII | GATC | 2 cut(s) | 66, 527 |
| NlaIII | CATG | 7 cut(s) | 119, 176, 306, 377, 391, 412, 433 |
| NlaIV | GGNNCC | 6 cut(s) | 218, 385, 406, 427, 448, 599 |
| NspI | RCATGY | 1 cut(s) | 306 |
| PagI | TCATGA | 1 cut(s) | 172 |
| PciI | ACATGT | 1 cut(s) | 302 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 472 |
| PctI | GAATGC | 1 cut(s) | 168 |
| PkrI | GCNGC | 1 cut(s) | 712 |
| PluTI | GGCGCC | 2 cut(s) | 387, 450 |
| PmaCI | CACGTG | 1 cut(s) | 323 |
| PmlI | CACGTG | 1 cut(s) | 323 |
| Ppu21I | YACGTR | 1 cut(s) | 323 |
| PpuMI | RGGWCCY | 1 cut(s) | 598 |
| PscI | ACATGT | 1 cut(s) | 302 |
| PsiI | TTATAA | 2 cut(s) | 141, 186 |
| Psp5II | RGGWCCY | 1 cut(s) | 598 |
| Psp6I | CCWGG | 1 cut(s) | 346 |
| PspCI | CACGTG | 1 cut(s) | 323 |
| PspGI | CCWGG | 1 cut(s) | 346 |
| PspN4I | GGNNCC | 6 cut(s) | 218, 385, 406, 427, 448, 599 |
| PspPI | GGNCC | 3 cut(s) | 150, 251, 598 |
| PspPPI | RGGWCCY | 1 cut(s) | 598 |
| PstI | CTGCAG | 1 cut(s) | 715 |
| RsaI | GTAC | 3 cut(s) | 25, 478, 620 |
| RsaNI | GTAC | 3 cut(s) | 24, 477, 619 |
| RseI | CAYNNNNRTG | 3 cut(s) | 128, 522, 705 |
| SaqAI | TTAA | 3 cut(s) | 146, 222, 488 |
| SatI | GCNGC | 1 cut(s) | 711 |
| Sau3AI | GATC | 2 cut(s) | 66, 527 |
| Sau96I | GGNCC | 3 cut(s) | 150, 251, 598 |
| ScrFI | CCNGG | 1 cut(s) | 348 |
| SduI | GDGCHC | 1 cut(s) | 702 |
| SfaNI | GCATC | 1 cut(s) | 697 |
| SfcI | CTRYAG | 2 cut(s) | 102, 711 |
| SfoI | GGCGCC | 2 cut(s) | 385, 448 |
| SinI | GGWCC | 2 cut(s) | 251, 598 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 128, 522, 705 |
| SmlI | CTYRAG | 1 cut(s) | 221 |
| SmoI | CTYRAG | 1 cut(s) | 221 |
| Sse9I | AATT | 4 cut(s) | 136, 142, 181, 485 |
| SsiI | CCGC | 2 cut(s) | 214, 262 |
| SspDI | GGCGCC | 2 cut(s) | 383, 446 |
| SspMI | CTAG | 2 cut(s) | 459, 572 |
| StyD4I | CCNGG | 1 cut(s) | 346 |
| StyI | CCWWGG | 3 cut(s) | 387, 408, 429 |
| TaiI | ACGT | 2 cut(s) | 325, 478 |
| TaqI | TCGA | 1 cut(s) | 520 |
| TasI | AATT | 4 cut(s) | 136, 142, 181, 485 |
| TatI | WGTACW | 1 cut(s) | 23 |
| Tru1I | TTAA | 3 cut(s) | 146, 222, 488 |
| Tru9I | TTAA | 3 cut(s) | 146, 222, 488 |
| TscAI | CASTG | 1 cut(s) | 52 |
| TseI | GCWGC | 1 cut(s) | 710 |
| TspDTI | ATGAA | 4 cut(s) | 68, 161, 702, 708 |
| TspGWI | ACGGA | 1 cut(s) | 79 |
| TspRI | CASTG | 1 cut(s) | 52 |
| Vha464I | CTTAAG | 1 cut(s) | 221 |
| VneI | GTGCAC | 1 cut(s) | 698 |
| VpaK11BI | GGWCC | 2 cut(s) | 251, 598 |
| XceI | RCATGY | 1 cut(s) | 306 |
| XspI | CTAG | 2 cut(s) | 459, 572 |