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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 948 |
| AccB1I | GGYRCC | 2 cut(s) | 52, 788 |
| AccII | CGCG | 1 cut(s) | 557 |
| AccIII | TCCGGA | 1 cut(s) | 868 |
| AciI | CCGC | 2 cut(s) | 307, 348 |
| AclWI | GGATC | 4 cut(s) | 113, 415, 427, 428 |
| AcoI | YGGCCR | 2 cut(s) | 367, 387 |
| AfaI | GTAC | 3 cut(s) | 456, 460, 572 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 150, 365, 392, 417, 580, 899, 970 |
| AgsI | TTSAA | 2 cut(s) | 288, 485 |
| AjiI | CACGTC | 1 cut(s) | 150 |
| AjnI | CCWGG | 1 cut(s) | 330 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 17, 49 |
| AleI | CACNNNNGTG | 1 cut(s) | 50 |
| AluBI | AGCT | 8 cut(s) | 186, 237, 473, 497, 518, 619, 781, 803 |
| AluI | AGCT | 8 cut(s) | 186, 237, 473, 497, 518, 619, 781, 803 |
| Alw21I | GWGCWC | 1 cut(s) | 892 |
| Alw26I | GTCTC | 2 cut(s) | 64, 715 |
| AlwI | GGATC | 4 cut(s) | 113, 415, 427, 428 |
| Aor13HI | TCCGGA | 1 cut(s) | 868 |
| AoxI | GGCC | 3 cut(s) | 172, 367, 387 |
| ApeKI | GCWGC | 5 cut(s) | 234, 252, 473, 476, 616 |
| AspLEI | GCGC | 1 cut(s) | 559 |
| AspS9I | GGNCC | 2 cut(s) | 116, 950 |
| AsuC2I | CCSGG | 1 cut(s) | 216 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 133 |
| AvaII | GGWCC | 2 cut(s) | 116, 950 |
| BaeGI | GKGCMC | 1 cut(s) | 57 |
| BamHI | GGATCC | 1 cut(s) | 420 |
| BanI | GGYRCC | 2 cut(s) | 52, 788 |
| BbsI | GAAGAC | 2 cut(s) | 591, 695 |
| Bbv12I | GWGCWC | 1 cut(s) | 892 |
| BbvCI | CCTCAGC | 1 cut(s) | 302 |
| BbvI | GCAGC | 5 cut(s) | 246, 264, 460, 463, 628 |
| BccI | CCATC | 4 cut(s) | 362, 386, 410, 533 |
| BciT130I | CCWGG | 1 cut(s) | 332 |
| BcnI | CCSGG | 1 cut(s) | 216 |
| BcoDI | GTCTC | 2 cut(s) | 64, 715 |
| BfaI | CTAG | 5 cut(s) | 204, 260, 599, 756, 843 |
| BglII | AGATCT | 1 cut(s) | 320 |
| BisI | GCNGC | 7 cut(s) | 235, 253, 307, 349, 474, 477, 617 |
| BlsI | GCNGC | 7 cut(s) | 236, 254, 308, 350, 475, 478, 618 |
| Bme1390I | CCNGG | 2 cut(s) | 216, 332 |
| Bme18I | GGWCC | 2 cut(s) | 116, 950 |
| BmgBI | CACGTC | 1 cut(s) | 150 |
| BmgT120I | GGNCC | 2 cut(s) | 116, 950 |
| BmiI | GGNNCC | 5 cut(s) | 54, 352, 422, 790, 856 |
| BmrFI | CCNGG | 2 cut(s) | 216, 332 |
| BmrI | ACTGGG | 1 cut(s) | 57 |
| BmsI | GCATC | 1 cut(s) | 771 |
| BmuI | ACTGGG | 1 cut(s) | 57 |
| BpiI | GAAGAC | 2 cut(s) | 591, 695 |
| BpmI | CTGGAG | 3 cut(s) | 73, 314, 632 |
| Bpu10I | CCTNAGC | 3 cut(s) | 176, 182, 302 |
| BpuEI | CTTGAG | 1 cut(s) | 172 |
| BpuMI | CCSGG | 1 cut(s) | 216 |
| BsaAI | YACGTR | 1 cut(s) | 458 |
| BsaJI | CCNNGG | 2 cut(s) | 849, 894 |
| BsaWI | WCCGGW | 2 cut(s) | 392, 868 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 150, 365, 392, 417, 580, 899, 970 |
| Bse118I | RCCGGY | 4 cut(s) | 344, 365, 369, 385 |
| Bse1I | ACTGG | 3 cut(s) | 52, 136, 615 |
| BseAI | TCCGGA | 1 cut(s) | 868 |
| BseBI | CCWGG | 1 cut(s) | 332 |
| BseDI | CCNNGG | 2 cut(s) | 849, 894 |
| BseGI | GGATG | 1 cut(s) | 354 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 150, 365, 392, 417, 580, 899, 970 |
| BseMII | CTCAG | 2 cut(s) | 167, 316 |
| BseNI | ACTGG | 3 cut(s) | 52, 136, 615 |
| BseRI | GAGGAG | 2 cut(s) | 453, 521 |
| BseSI | GKGCMC | 1 cut(s) | 57 |
| BseX3I | CGGCCG | 1 cut(s) | 367 |
| BseXI | GCAGC | 5 cut(s) | 246, 264, 460, 463, 628 |
| Bsh1236I | CGCG | 1 cut(s) | 557 |
| Bsh1285I | CGRYCG | 1 cut(s) | 370 |
| BshFI | GGCC | 3 cut(s) | 174, 369, 389 |
| BshNI | GGYRCC | 2 cut(s) | 52, 788 |
| BsiEI | CGRYCG | 1 cut(s) | 370 |
| BsiHKAI | GWGCWC | 1 cut(s) | 892 |
| BsiSI | CCGG | 7 cut(s) | 216, 345, 366, 370, 386, 393, 869 |
| BsiWI | CGTACG | 1 cut(s) | 454 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 150, 365, 392, 417, 580, 899, 970 |
| BsmAI | GTCTC | 2 cut(s) | 64, 715 |
| BsmBI | CGTCTC | 2 cut(s) | 64, 715 |
| BsnI | GGCC | 3 cut(s) | 174, 369, 389 |
| Bsp1286I | GDGCHC | 2 cut(s) | 57, 892 |
| Bsp13I | TCCGGA | 1 cut(s) | 868 |
| Bsp143I | GATC | 8 cut(s) | 73, 105, 166, 220, 320, 420, 432, 681 |
| BspACI | CCGC | 2 cut(s) | 307, 348 |
| BspANI | GGCC | 3 cut(s) | 174, 369, 389 |
| BspCNI | CTCAG | 2 cut(s) | 168, 315 |
| BspEI | TCCGGA | 1 cut(s) | 868 |
| BspFNI | CGCG | 1 cut(s) | 557 |
| BspHI | TCATGA | 2 cut(s) | 534, 775 |
| BspLI | GGNNCC | 5 cut(s) | 54, 352, 422, 790, 856 |
| BspPI | GGATC | 4 cut(s) | 113, 415, 427, 428 |
| BspT107I | GGYRCC | 2 cut(s) | 52, 788 |
| BsrFI | RCCGGY | 4 cut(s) | 344, 365, 369, 385 |
| BsrI | ACTGG | 3 cut(s) | 52, 136, 615 |
| BssAI | RCCGGY | 4 cut(s) | 344, 365, 369, 385 |
| BssECI | CCNNGG | 2 cut(s) | 849, 894 |
| BssMI | GATC | 8 cut(s) | 73, 105, 166, 220, 320, 420, 432, 681 |
| BssT1I | CCWWGG | 1 cut(s) | 894 |
| Bst2UI | CCWGG | 1 cut(s) | 332 |
| Bst4CI | ACNGT | 1 cut(s) | 197 |
| BstBAI | YACGTR | 1 cut(s) | 458 |
| BstC8I | GCNNGC | 1 cut(s) | 371 |
| BstDEI | CTNAG | 6 cut(s) | 11, 176, 182, 302, 655, 921 |
| BstDSI | CCRYGG | 1 cut(s) | 849 |
| BstEII | GGTNACC | 1 cut(s) | 139 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 578 |
| BstF5I | GGATG | 1 cut(s) | 354 |
| BstFNI | CGCG | 1 cut(s) | 557 |
| BstHHI | GCGC | 1 cut(s) | 559 |
| BstKTI | GATC | 8 cut(s) | 76, 108, 169, 223, 323, 423, 435, 684 |
| BstMAI | GTCTC | 2 cut(s) | 64, 715 |
| BstMBI | GATC | 8 cut(s) | 73, 105, 166, 220, 320, 420, 432, 681 |
| BstMCI | CGRYCG | 1 cut(s) | 370 |
| BstNI | CCWGG | 1 cut(s) | 332 |
| BstPI | GGTNACC | 1 cut(s) | 139 |
| BstSCI | CCNGG | 2 cut(s) | 214, 330 |
| BstSLI | GKGCMC | 1 cut(s) | 57 |
| BstSNI | TACGTA | 1 cut(s) | 458 |
| BstUI | CGCG | 1 cut(s) | 557 |
| BstV1I | GCAGC | 5 cut(s) | 246, 264, 460, 463, 628 |
| BstV2I | GAAGAC | 2 cut(s) | 591, 695 |
| BstX2I | RGATCY | 2 cut(s) | 320, 420 |
| BstYI | RGATCY | 2 cut(s) | 320, 420 |
| BstZI | CGGCCG | 1 cut(s) | 367 |
| BsuRI | GGCC | 3 cut(s) | 174, 369, 389 |
| BtgI | CCRYGG | 1 cut(s) | 849 |
| BtrI | CACGTC | 1 cut(s) | 150 |
| BtsCI | GGATG | 1 cut(s) | 354 |
| BtsI | GCAGTG | 1 cut(s) | 122 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 122 |
| Cac8I | GCNNGC | 1 cut(s) | 371 |
| CciI | TCATGA | 2 cut(s) | 534, 775 |
| CfoI | GCGC | 1 cut(s) | 559 |
| Cfr10I | RCCGGY | 4 cut(s) | 344, 365, 369, 385 |
| Cfr13I | GGNCC | 2 cut(s) | 116, 950 |
| CseI | GACGC | 3 cut(s) | 145, 563, 768 |
| Csp6I | GTAC | 3 cut(s) | 455, 459, 571 |
| CviAII | CATG | 4 cut(s) | 535, 547, 776, 793 |
| CviQI | GTAC | 3 cut(s) | 455, 459, 571 |
| DdeI | CTNAG | 6 cut(s) | 11, 176, 182, 302, 655, 921 |
| DpnI | GATC | 8 cut(s) | 75, 107, 168, 222, 322, 422, 434, 683 |
| DpnII | GATC | 8 cut(s) | 73, 105, 166, 220, 320, 420, 432, 681 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 948 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 948 |
| EaeI | YGGCCR | 2 cut(s) | 367, 387 |
| EagI | CGGCCG | 1 cut(s) | 367 |
| EclXI | CGGCCG | 1 cut(s) | 367 |
| Eco105I | TACGTA | 1 cut(s) | 458 |
| Eco130I | CCWWGG | 1 cut(s) | 894 |
| Eco47I | GGWCC | 2 cut(s) | 116, 950 |
| Eco52I | CGGCCG | 1 cut(s) | 367 |
| Eco91I | GGTNACC | 1 cut(s) | 139 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 578 |
| EcoO65I | GGTNACC | 1 cut(s) | 139 |
| EcoRII | CCWGG | 1 cut(s) | 330 |
| EcoT14I | CCWWGG | 1 cut(s) | 894 |
| ErhI | CCWWGG | 1 cut(s) | 894 |
| Esp3I | CGTCTC | 2 cut(s) | 64, 715 |
| FaeI | CATG | 4 cut(s) | 538, 550, 779, 796 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 128, 160 |
| FatI | CATG | 4 cut(s) | 534, 546, 775, 792 |
| Fnu4HI | GCNGC | 7 cut(s) | 235, 253, 307, 349, 474, 477, 617 |
| FokI | GGATG | 1 cut(s) | 341 |
| Fsp4HI | GCNGC | 7 cut(s) | 235, 253, 307, 349, 474, 477, 617 |
| FspBI | CTAG | 5 cut(s) | 204, 260, 599, 756, 843 |
| GlaI | GCGC | 1 cut(s) | 558 |
| GluI | GCNGC | 7 cut(s) | 235, 253, 307, 349, 474, 477, 617 |
| GsuI | CTGGAG | 3 cut(s) | 73, 314, 632 |
| HaeIII | GGCC | 3 cut(s) | 174, 369, 389 |
| HapII | CCGG | 7 cut(s) | 216, 345, 366, 370, 386, 393, 869 |
| HgaI | GACGC | 3 cut(s) | 145, 563, 768 |
| HhaI | GCGC | 1 cut(s) | 559 |
| Hin1II | CATG | 4 cut(s) | 538, 550, 779, 796 |
| Hin6I | GCGC | 1 cut(s) | 557 |
| HinP1I | GCGC | 1 cut(s) | 557 |
| HinfI | GANTC | 4 cut(s) | 335, 638, 691, 872 |
| HpaII | CCGG | 7 cut(s) | 216, 345, 366, 370, 386, 393, 869 |
| HphI | GGTGA | 2 cut(s) | 49, 133 |
| Hpy188I | TCNGA | 4 cut(s) | 69, 161, 340, 741 |
| Hpy188III | TCNNGA | 9 cut(s) | 424, 449, 535, 650, 685, 776, 843, 869, 939 |
| HpyAV | CCTTC | 2 cut(s) | 294, 968 |
| HpyCH4III | ACNGT | 1 cut(s) | 197 |
| HpyCH4IV | ACGT | 8 cut(s) | 16, 149, 453, 457, 630, 798, 904, 943 |
| HpyCH4V | TGCA | 2 cut(s) | 127, 716 |
| HpyF3I | CTNAG | 6 cut(s) | 11, 176, 182, 302, 655, 921 |
| HpySE526I | ACGT | 8 cut(s) | 16, 149, 453, 457, 630, 798, 904, 943 |
| Hsp92II | CATG | 4 cut(s) | 538, 550, 779, 796 |
| HspAI | GCGC | 1 cut(s) | 557 |
| Kpn2I | TCCGGA | 1 cut(s) | 868 |
| KroI | GCCGGC | 1 cut(s) | 369 |
| KroNI | GCCGGC | 1 cut(s) | 371 |
| Kzo9I | GATC | 8 cut(s) | 73, 105, 166, 220, 320, 420, 432, 681 |
| LmnI | GCTCC | 5 cut(s) | 356, 564, 613, 895, 910 |
| Lsp1109I | GCAGC | 5 cut(s) | 246, 264, 460, 463, 628 |
| LweI | GCATC | 1 cut(s) | 771 |
| MaeI | CTAG | 5 cut(s) | 204, 260, 599, 756, 843 |
| MaeII | ACGT | 8 cut(s) | 16, 149, 453, 457, 630, 798, 904, 943 |
| MaeIII | GTNAC | 1 cut(s) | 139 |
| MalI | GATC | 8 cut(s) | 75, 107, 168, 222, 322, 422, 434, 683 |
| MboI | GATC | 8 cut(s) | 73, 105, 166, 220, 320, 420, 432, 681 |
| MboII | GAAGA | 6 cut(s) | 330, 408, 497, 596, 700, 841 |
| MflI | RGATCY | 2 cut(s) | 320, 420 |
| MhlI | GDGCHC | 2 cut(s) | 57, 892 |
| MluCI | AATT | 4 cut(s) | 783, 864, 877, 934 |
| MlyI | GAGTC | 3 cut(s) | 344, 685, 881 |
| MroI | TCCGGA | 1 cut(s) | 868 |
| MroNI | GCCGGC | 1 cut(s) | 369 |
| MslI | CAYNNNNRTG | 5 cut(s) | 50, 228, 533, 549, 824 |
| MspI | CCGG | 7 cut(s) | 216, 345, 366, 370, 386, 393, 869 |
| MspR9I | CCNGG | 2 cut(s) | 216, 332 |
| MvaI | CCWGG | 1 cut(s) | 332 |
| MvnI | CGCG | 1 cut(s) | 557 |
| NaeI | GCCGGC | 1 cut(s) | 371 |
| NciI | CCSGG | 1 cut(s) | 216 |
| NdeII | GATC | 8 cut(s) | 73, 105, 166, 220, 320, 420, 432, 681 |
| NgoMIV | GCCGGC | 1 cut(s) | 369 |
| NlaIII | CATG | 4 cut(s) | 538, 550, 779, 796 |
| NlaIV | GGNNCC | 5 cut(s) | 54, 352, 422, 790, 856 |
| NmuCI | GTSAC | 1 cut(s) | 139 |
| OliI | CACNNNNGTG | 1 cut(s) | 50 |
| PagI | TCATGA | 2 cut(s) | 534, 775 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 910 |
| PdiI | GCCGGC | 1 cut(s) | 371 |
| PfeI | GAWTC | 1 cut(s) | 638 |
| Pfl23II | CGTACG | 1 cut(s) | 454 |
| PfoI | TCCNGGA | 2 cut(s) | 214, 330 |
| PkrI | GCNGC | 7 cut(s) | 236, 254, 308, 350, 475, 478, 618 |
| PleI | GAGTC | 3 cut(s) | 343, 685, 880 |
| PpsI | GAGTC | 3 cut(s) | 343, 685, 880 |
| Ppu21I | YACGTR | 1 cut(s) | 458 |
| Psp6I | CCWGG | 1 cut(s) | 330 |
| PspEI | GGTNACC | 1 cut(s) | 139 |
| PspGI | CCWGG | 1 cut(s) | 330 |
| PspLI | CGTACG | 1 cut(s) | 454 |
| PspN4I | GGNNCC | 5 cut(s) | 54, 352, 422, 790, 856 |
| PspPI | GGNCC | 2 cut(s) | 116, 950 |
| PsuI | RGATCY | 2 cut(s) | 320, 420 |
| RsaI | GTAC | 3 cut(s) | 456, 460, 572 |
| RsaNI | GTAC | 3 cut(s) | 455, 459, 571 |
| RseI | CAYNNNNRTG | 5 cut(s) | 50, 228, 533, 549, 824 |
| SatI | GCNGC | 7 cut(s) | 235, 253, 307, 349, 474, 477, 617 |
| Sau3AI | GATC | 8 cut(s) | 73, 105, 166, 220, 320, 420, 432, 681 |
| Sau96I | GGNCC | 2 cut(s) | 116, 950 |
| SchI | GAGTC | 3 cut(s) | 344, 685, 881 |
| ScrFI | CCNGG | 2 cut(s) | 216, 332 |
| SduI | GDGCHC | 2 cut(s) | 57, 892 |
| SfaNI | GCATC | 1 cut(s) | 771 |
| SinI | GGWCC | 2 cut(s) | 116, 950 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 50, 228, 533, 549, 824 |
| SmlI | CTYRAG | 1 cut(s) | 187 |
| SmoI | CTYRAG | 1 cut(s) | 187 |
| SnaBI | TACGTA | 1 cut(s) | 458 |
| Sse9I | AATT | 4 cut(s) | 783, 864, 877, 934 |
| SsiI | CCGC | 2 cut(s) | 307, 348 |
| SspMI | CTAG | 5 cut(s) | 204, 260, 599, 756, 843 |
| StyD4I | CCNGG | 2 cut(s) | 214, 330 |
| StyI | CCWWGG | 1 cut(s) | 894 |
| TaaI | ACNGT | 1 cut(s) | 197 |
| TaiI | ACGT | 8 cut(s) | 19, 152, 456, 460, 633, 801, 907, 946 |
| TaqI | TCGA | 4 cut(s) | 101, 316, 381, 684 |
| TasI | AATT | 4 cut(s) | 783, 864, 877, 934 |
| TauI | GCSGC | 2 cut(s) | 309, 351 |
| TfiI | GAWTC | 1 cut(s) | 638 |
| TscAI | CASTG | 2 cut(s) | 52, 129 |
| TseFI | GTSAC | 1 cut(s) | 139 |
| TseI | GCWGC | 5 cut(s) | 234, 252, 473, 476, 616 |
| Tsp45I | GTSAC | 1 cut(s) | 139 |
| TspDTI | ATGAA | 5 cut(s) | 17, 528, 563, 764, 809 |
| TspGWI | ACGGA | 1 cut(s) | 623 |
| TspRI | CASTG | 2 cut(s) | 52, 129 |
| VpaK11BI | GGWCC | 2 cut(s) | 116, 950 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 578 |
| XbaI | TCTAGA | 1 cut(s) | 842 |
| XspI | CTAG | 5 cut(s) | 204, 260, 599, 756, 843 |