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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 726 |
| Acc36I | ACCTGC | 1 cut(s) | 271 |
| AccB1I | GGYRCC | 1 cut(s) | 681 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 737 |
| AccIII | TCCGGA | 1 cut(s) | 646 |
| AciI | CCGC | 2 cut(s) | 79, 358 |
| AclWI | GGATC | 1 cut(s) | 548 |
| AcsI | RAATTY | 1 cut(s) | 425 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 737 |
| AgsI | TTSAA | 1 cut(s) | 373 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 285, 317 |
| AluBI | AGCT | 4 cut(s) | 48, 161, 559, 569 |
| AluI | AGCT | 4 cut(s) | 48, 161, 559, 569 |
| Alw21I | GWGCWC | 1 cut(s) | 561 |
| Alw26I | GTCTC | 2 cut(s) | 289, 493 |
| AlwI | GGATC | 1 cut(s) | 548 |
| Aor13HI | TCCGGA | 1 cut(s) | 646 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| ApoI | RAATTY | 1 cut(s) | 425 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 402 |
| AspS9I | GGNCC | 1 cut(s) | 728 |
| AvaII | GGWCC | 1 cut(s) | 728 |
| BanI | GGYRCC | 1 cut(s) | 681 |
| BanII | GRGCYC | 1 cut(s) | 561 |
| BbsI | GAAGAC | 2 cut(s) | 270, 473 |
| Bbv12I | GWGCWC | 1 cut(s) | 561 |
| BbvI | GCAGC | 1 cut(s) | 264 |
| BccI | CCATC | 6 cut(s) | 92, 215, 339, 493, 522, 531 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 703 |
| BcoDI | GTCTC | 2 cut(s) | 289, 493 |
| BfaI | CTAG | 4 cut(s) | 45, 107, 126, 335 |
| BfmI | CTRYAG | 1 cut(s) | 278 |
| BfuAI | ACCTGC | 1 cut(s) | 271 |
| BfuI | GTATCC | 1 cut(s) | 703 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 728 |
| BmgT120I | GGNCC | 1 cut(s) | 728 |
| BmiI | GGNNCC | 1 cut(s) | 683 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 3 cut(s) | 94, 188, 439 |
| BpiI | GAAGAC | 2 cut(s) | 270, 473 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 140, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 522 |
| BsaI | GGTCTC | 1 cut(s) | 289 |
| BsaWI | WCCGGW | 1 cut(s) | 646 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 737 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseAI | TCCGGA | 1 cut(s) | 646 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 522 |
| BseGI | GGATG | 3 cut(s) | 179, 210, 238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 737 |
| BseMII | CTCAG | 1 cut(s) | 408 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseXI | GCAGC | 1 cut(s) | 264 |
| BshNI | GGYRCC | 1 cut(s) | 681 |
| BshVI | ATCGAT | 1 cut(s) | 522 |
| BsiHKAI | GWGCWC | 1 cut(s) | 561 |
| BsiSI | CCGG | 1 cut(s) | 647 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 737 |
| BsmAI | GTCTC | 2 cut(s) | 289, 493 |
| BsmBI | CGTCTC | 1 cut(s) | 493 |
| Bso31I | GGTCTC | 1 cut(s) | 289 |
| Bsp1286I | GDGCHC | 1 cut(s) | 561 |
| Bsp13I | TCCGGA | 1 cut(s) | 646 |
| Bsp143I | GATC | 2 cut(s) | 441, 540 |
| BspACI | CCGC | 2 cut(s) | 79, 358 |
| BspCNI | CTCAG | 1 cut(s) | 407 |
| BspDI | ATCGAT | 1 cut(s) | 522 |
| BspEI | TCCGGA | 1 cut(s) | 646 |
| BspHI | TCATGA | 1 cut(s) | 553 |
| BspLI | GGNNCC | 1 cut(s) | 683 |
| BspMAI | CTGCAG | 1 cut(s) | 282 |
| BspMI | ACCTGC | 1 cut(s) | 271 |
| BspPI | GGATC | 1 cut(s) | 548 |
| BspT107I | GGYRCC | 1 cut(s) | 681 |
| BspTNI | GGTCTC | 1 cut(s) | 289 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssMI | GATC | 2 cut(s) | 441, 540 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 5 cut(s) | 184, 394, 507, 704, 747 |
| BstF5I | GGATG | 3 cut(s) | 179, 210, 238 |
| BstKTI | GATC | 2 cut(s) | 444, 543 |
| BstMAI | GTCTC | 2 cut(s) | 289, 493 |
| BstMBI | GATC | 2 cut(s) | 441, 540 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 197 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 278 |
| BstV1I | GCAGC | 1 cut(s) | 264 |
| BstV2I | GAAGAC | 2 cut(s) | 270, 473 |
| Bsu15I | ATCGAT | 1 cut(s) | 522 |
| BsuI | GTATCC | 1 cut(s) | 703 |
| BsuTUI | ATCGAT | 1 cut(s) | 522 |
| BtgZI | GCGATG | 1 cut(s) | 467 |
| BtsCI | GGATG | 3 cut(s) | 179, 210, 238 |
| BveI | ACCTGC | 1 cut(s) | 271 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 1 cut(s) | 553 |
| Cfr13I | GGNCC | 1 cut(s) | 728 |
| ClaI | ATCGAT | 1 cut(s) | 522 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 136, 554, 590 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 5 cut(s) | 184, 394, 507, 704, 747 |
| DpnI | GATC | 2 cut(s) | 443, 542 |
| DpnII | GATC | 2 cut(s) | 441, 540 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 726 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 726 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 559 |
| Eco24I | GRGCYC | 1 cut(s) | 561 |
| Eco31I | GGTCTC | 1 cut(s) | 289 |
| Eco32I | GATATC | 2 cut(s) | 56, 76 |
| Eco47I | GGWCC | 1 cut(s) | 728 |
| Eco53kI | GAGCTC | 1 cut(s) | 559 |
| EcoICRI | GAGCTC | 1 cut(s) | 559 |
| EcoRI | GAATTC | 1 cut(s) | 425 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 2 cut(s) | 56, 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 561 |
| Esp3I | CGTCTC | 1 cut(s) | 493 |
| FaeI | CATG | 3 cut(s) | 139, 557, 593 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 697, 729 |
| FatI | CATG | 3 cut(s) | 135, 553, 589 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 3 cut(s) | 166, 197, 245 |
| FriOI | GRGCYC | 1 cut(s) | 561 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 4 cut(s) | 45, 107, 126, 335 |
| GluI | GCNGC | 1 cut(s) | 278 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HapII | CCGG | 1 cut(s) | 647 |
| Hin1II | CATG | 3 cut(s) | 139, 557, 593 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 9 cut(s) | 102, 115, 220, 236, 317, 469, 519, 624, 650 |
| HpaII | CCGG | 1 cut(s) | 647 |
| Hpy166II | GTNNAC | 1 cut(s) | 437 |
| Hpy188I | TCNGA | 1 cut(s) | 397 |
| Hpy188III | TCNNGA | 9 cut(s) | 51, 71, 119, 329, 383, 554, 621, 647, 717 |
| Hpy8I | GTNNAC | 1 cut(s) | 437 |
| HpyAV | CCTTC | 2 cut(s) | 267, 490 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 309 |
| HpyCH4V | TGCA | 2 cut(s) | 280, 494 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 197 |
| HpyF3I | CTNAG | 5 cut(s) | 184, 394, 507, 704, 747 |
| HpySE526I | ACGT | 1 cut(s) | 309 |
| Hsp92II | CATG | 3 cut(s) | 139, 557, 593 |
| Kpn2I | TCCGGA | 1 cut(s) | 646 |
| Kzo9I | GATC | 2 cut(s) | 441, 540 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 566 |
| Lsp1109I | GCAGC | 1 cut(s) | 264 |
| LweI | GCATC | 3 cut(s) | 94, 188, 439 |
| MaeI | CTAG | 4 cut(s) | 45, 107, 126, 335 |
| MaeII | ACGT | 1 cut(s) | 309 |
| MaeIII | GTNAC | 2 cut(s) | 5, 314 |
| MalI | GATC | 2 cut(s) | 443, 542 |
| MboI | GATC | 2 cut(s) | 441, 540 |
| MboII | GAAGA | 5 cut(s) | 179, 275, 305, 478, 619 |
| MhlI | GDGCHC | 1 cut(s) | 561 |
| MluCI | AATT | 4 cut(s) | 17, 425, 616, 655 |
| MlyI | GAGTC | 3 cut(s) | 214, 311, 463 |
| MnlI | CCTC | 4 cut(s) | 181, 365, 671, 679 |
| MroI | TCCGGA | 1 cut(s) | 646 |
| MroXI | GAANNNNTTC | 1 cut(s) | 402 |
| MseI | TTAA | 3 cut(s) | 411, 419, 528 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspI | CCGG | 1 cut(s) | 647 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 441, 540 |
| NlaIII | CATG | 3 cut(s) | 139, 557, 593 |
| NlaIV | GGNNCC | 1 cut(s) | 683 |
| NmuCI | GTSAC | 1 cut(s) | 314 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PagI | TCATGA | 1 cut(s) | 553 |
| PdmI | GAANNNNTTC | 1 cut(s) | 402 |
| PfeI | GAWTC | 6 cut(s) | 102, 115, 236, 519, 624, 650 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 737 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 3 cut(s) | 214, 311, 463 |
| PpsI | GAGTC | 3 cut(s) | 214, 311, 463 |
| Psp124BI | GAGCTC | 1 cut(s) | 561 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 683 |
| PspPI | GGNCC | 1 cut(s) | 728 |
| PstI | CTGCAG | 1 cut(s) | 282 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SacI | GAGCTC | 1 cut(s) | 561 |
| SaqAI | TTAA | 3 cut(s) | 411, 419, 528 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau3AI | GATC | 2 cut(s) | 441, 540 |
| Sau96I | GGNCC | 1 cut(s) | 728 |
| SchI | GAGTC | 3 cut(s) | 214, 311, 463 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 561 |
| SfaNI | GCATC | 3 cut(s) | 94, 188, 439 |
| SfcI | CTRYAG | 1 cut(s) | 278 |
| SinI | GGWCC | 1 cut(s) | 728 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 425, 616, 655 |
| SsiI | CCGC | 2 cut(s) | 79, 358 |
| SspMI | CTAG | 4 cut(s) | 45, 107, 126, 335 |
| SstI | GAGCTC | 1 cut(s) | 561 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 312 |
| TaqI | TCGA | 4 cut(s) | 291, 517, 522, 620 |
| TasI | AATT | 4 cut(s) | 17, 425, 616, 655 |
| TfiI | GAWTC | 6 cut(s) | 102, 115, 236, 519, 624, 650 |
| Tru1I | TTAA | 3 cut(s) | 411, 419, 528 |
| Tru9I | TTAA | 3 cut(s) | 411, 419, 528 |
| TseFI | GTSAC | 1 cut(s) | 314 |
| TseI | GCWGC | 1 cut(s) | 277 |
| Tsp45I | GTSAC | 1 cut(s) | 314 |
| TspDTI | ATGAA | 2 cut(s) | 272, 542 |
| TspGWI | ACGGA | 1 cut(s) | 302 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 737 |
| VpaK11BI | GGWCC | 1 cut(s) | 728 |
| XapI | RAATTY | 1 cut(s) | 425 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XmnI | GAANNNNTTC | 1 cut(s) | 402 |
| XspI | CTAG | 4 cut(s) | 45, 107, 126, 335 |