transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 687, 732 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 795 |
| Acc36I | ACCTGC | 1 cut(s) | 822 |
| AccB1I | GGYRCC | 2 cut(s) | 496, 908 |
| AccBSI | CCGCTC | 1 cut(s) | 302 |
| AciI | CCGC | 5 cut(s) | 300, 318, 356, 808, 842 |
| AclWI | GGATC | 3 cut(s) | 49, 516, 620 |
| AcuI | CTGAAG | 1 cut(s) | 89 |
| AcvI | CACGTG | 3 cut(s) | 311, 851, 869 |
| AdeI | CACNNNGTG | 2 cut(s) | 854, 938 |
| AflIII | ACRYGT | 3 cut(s) | 848, 866, 972 |
| AgsI | TTSAA | 4 cut(s) | 112, 471, 545, 693 |
| AjnI | CCWGG | 2 cut(s) | 492, 892 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 500, 532 |
| AluBI | AGCT | 7 cut(s) | 103, 204, 341, 409, 564, 631, 653 |
| AluI | AGCT | 7 cut(s) | 103, 204, 341, 409, 564, 631, 653 |
| Alw21I | GWGCWC | 1 cut(s) | 943 |
| Alw26I | GTCTC | 2 cut(s) | 149, 286 |
| Alw44I | GTGCAC | 1 cut(s) | 939 |
| AlwI | GGATC | 3 cut(s) | 49, 516, 620 |
| Ama87I | CYCGRG | 1 cut(s) | 279 |
| AoxI | GGCC | 5 cut(s) | 57, 93, 269, 287, 695 |
| ApaLI | GTGCAC | 1 cut(s) | 939 |
| AspLEI | GCGC | 1 cut(s) | 257 |
| AspS9I | GGNCC | 5 cut(s) | 72, 94, 269, 287, 797 |
| AsuC2I | CCSGG | 5 cut(s) | 70, 219, 280, 281, 506 |
| AsuHPI | GGTGA | 1 cut(s) | 335 |
| AvaI | CYCGRG | 1 cut(s) | 279 |
| AvaII | GGWCC | 2 cut(s) | 72, 797 |
| BaeGI | GKGCMC | 1 cut(s) | 943 |
| BanI | GGYRCC | 2 cut(s) | 496, 908 |
| BauI | CACGAG | 4 cut(s) | 98, 146, 616, 674 |
| BbrPI | CACGTG | 3 cut(s) | 311, 851, 869 |
| Bbv12I | GWGCWC | 1 cut(s) | 943 |
| BccI | CCATC | 1 cut(s) | 808 |
| BciT130I | CCWGG | 2 cut(s) | 494, 894 |
| BciVI | GTATCC | 2 cut(s) | 838, 899 |
| BcnI | CCSGG | 5 cut(s) | 70, 219, 280, 281, 506 |
| BcoDI | GTCTC | 2 cut(s) | 149, 286 |
| BfaI | CTAG | 3 cut(s) | 390, 606, 921 |
| BfmI | CTRYAG | 2 cut(s) | 573, 648 |
| BfoI | RGCGCY | 1 cut(s) | 258 |
| BfuAI | ACCTGC | 1 cut(s) | 822 |
| BfuI | GTATCC | 2 cut(s) | 838, 899 |
| BisI | GCNGC | 2 cut(s) | 300, 357 |
| BlpI | GCTNAGC | 1 cut(s) | 86 |
| BlsI | GCNGC | 2 cut(s) | 301, 358 |
| Bme1390I | CCNGG | 7 cut(s) | 70, 219, 280, 281, 494, 506, 894 |
| Bme18I | GGWCC | 2 cut(s) | 72, 797 |
| BmeT110I | CYCGRG | 1 cut(s) | 279 |
| BmgT120I | GGNCC | 5 cut(s) | 72, 94, 269, 287, 797 |
| BmiI | GGNNCC | 5 cut(s) | 73, 498, 764, 798, 910 |
| BmrFI | CCNGG | 7 cut(s) | 70, 219, 280, 281, 494, 506, 894 |
| BmsI | GCATC | 2 cut(s) | 124, 746 |
| BoxI | GACNNNNGTC | 1 cut(s) | 975 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 86 |
| BpuMI | CCSGG | 5 cut(s) | 70, 219, 280, 281, 506 |
| BsaAI | YACGTR | 3 cut(s) | 311, 851, 869 |
| BsaBI | GATNNNNATC | 1 cut(s) | 167 |
| BsaI | GGTCTC | 1 cut(s) | 149 |
| BsaJI | CCNNGG | 2 cut(s) | 279, 892 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 865, 895, 901, 931 |
| Bse3DI | GCAATG | 1 cut(s) | 865 |
| Bse8I | GATNNNNATC | 1 cut(s) | 167 |
| BseBI | CCWGG | 2 cut(s) | 494, 894 |
| BseDI | CCNNGG | 2 cut(s) | 279, 892 |
| BseGI | GGATG | 2 cut(s) | 168, 737 |
| BseJI | GATNNNNATC | 1 cut(s) | 167 |
| BseMI | GCAATG | 1 cut(s) | 865 |
| BseMII | CTCAG | 2 cut(s) | 77, 645 |
| BseSI | GKGCMC | 1 cut(s) | 943 |
| BseYI | CCCAGC | 1 cut(s) | 284 |
| BshFI | GGCC | 5 cut(s) | 59, 95, 271, 289, 697 |
| BshNI | GGYRCC | 2 cut(s) | 496, 908 |
| BsiHKAI | GWGCWC | 1 cut(s) | 943 |
| BsiHKCI | CYCGRG | 1 cut(s) | 279 |
| BsiSI | CCGG | 5 cut(s) | 69, 219, 272, 280, 506 |
| BslFI | GGGAC | 3 cut(s) | 50, 85, 801 |
| BsmAI | GTCTC | 2 cut(s) | 149, 286 |
| BsmFI | GGGAC | 3 cut(s) | 50, 85, 801 |
| BsnI | GGCC | 5 cut(s) | 59, 95, 271, 289, 697 |
| Bso31I | GGTCTC | 1 cut(s) | 149 |
| BsoBI | CYCGRG | 1 cut(s) | 279 |
| Bsp1286I | GDGCHC | 1 cut(s) | 943 |
| Bsp143I | GATC | 6 cut(s) | 20, 41, 150, 162, 508, 612 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 86 |
| BspACI | CCGC | 5 cut(s) | 300, 318, 356, 808, 842 |
| BspANI | GGCC | 5 cut(s) | 59, 95, 271, 289, 697 |
| BspCNI | CTCAG | 2 cut(s) | 78, 646 |
| BspLI | GGNNCC | 5 cut(s) | 73, 498, 764, 798, 910 |
| BspMI | ACCTGC | 1 cut(s) | 822 |
| BspPI | GGATC | 3 cut(s) | 49, 516, 620 |
| BspQI | GCTCTTC | 1 cut(s) | 571 |
| BspT107I | GGYRCC | 2 cut(s) | 496, 908 |
| BspTNI | GGTCTC | 1 cut(s) | 149 |
| BsrBI | CCGCTC | 1 cut(s) | 302 |
| BsrDI | GCAATG | 1 cut(s) | 865 |
| BssECI | CCNNGG | 2 cut(s) | 279, 892 |
| BssMI | GATC | 6 cut(s) | 20, 41, 150, 162, 508, 612 |
| BssSI | CACGAG | 4 cut(s) | 98, 146, 616, 674 |
| Bst2BI | CACGAG | 4 cut(s) | 98, 146, 616, 674 |
| Bst2UI | CCWGG | 2 cut(s) | 494, 894 |
| Bst4CI | ACNGT | 4 cut(s) | 119, 185, 437, 577 |
| Bst6I | CTCTTC | 1 cut(s) | 571 |
| BstBAI | YACGTR | 3 cut(s) | 311, 851, 869 |
| BstDEI | CTNAG | 4 cut(s) | 86, 654, 708, 768 |
| BstEII | GGTNACC | 1 cut(s) | 442 |
| BstF5I | GGATG | 2 cut(s) | 168, 737 |
| BstH2I | RGCGCY | 1 cut(s) | 258 |
| BstHHI | GCGC | 1 cut(s) | 257 |
| BstKTI | GATC | 6 cut(s) | 23, 44, 153, 165, 511, 615 |
| BstMAI | GTCTC | 2 cut(s) | 149, 286 |
| BstMBI | GATC | 6 cut(s) | 20, 41, 150, 162, 508, 612 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 134, 365 |
| BstNI | CCWGG | 2 cut(s) | 494, 894 |
| BstNSI | RCATGY | 2 cut(s) | 542, 976 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 975 |
| BstPI | GGTNACC | 1 cut(s) | 442 |
| BstSCI | CCNGG | 7 cut(s) | 68, 217, 278, 279, 492, 504, 892 |
| BstSFI | CTRYAG | 2 cut(s) | 573, 648 |
| BstSLI | GKGCMC | 1 cut(s) | 943 |
| BstX2I | RGATCY | 1 cut(s) | 41 |
| BstYI | RGATCY | 1 cut(s) | 41 |
| BsuI | GTATCC | 2 cut(s) | 838, 899 |
| BsuRI | GGCC | 5 cut(s) | 59, 95, 271, 289, 697 |
| BtsCI | GGATG | 2 cut(s) | 168, 737 |
| BveI | ACCTGC | 1 cut(s) | 822 |
| CfoI | GCGC | 1 cut(s) | 257 |
| Cfr13I | GGNCC | 5 cut(s) | 72, 94, 269, 287, 797 |
| Cfr9I | CCCGGG | 1 cut(s) | 279 |
| CviAII | CATG | 4 cut(s) | 539, 581, 662, 973 |
| DdeI | CTNAG | 4 cut(s) | 86, 654, 708, 768 |
| DpnI | GATC | 6 cut(s) | 22, 43, 152, 164, 510, 614 |
| DpnII | GATC | 6 cut(s) | 20, 41, 150, 162, 508, 612 |
| DraIII | CACNNNGTG | 2 cut(s) | 854, 938 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 795 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 795 |
| Eam1104I | CTCTTC | 1 cut(s) | 571 |
| EarI | CTCTTC | 1 cut(s) | 571 |
| EciI | GGCGGA | 1 cut(s) | 333 |
| Eco147I | AGGCCT | 2 cut(s) | 59, 697 |
| Eco31I | GGTCTC | 1 cut(s) | 149 |
| Eco47I | GGWCC | 2 cut(s) | 72, 797 |
| Eco57I | CTGAAG | 1 cut(s) | 89 |
| Eco72I | CACGTG | 3 cut(s) | 311, 851, 869 |
| Eco88I | CYCGRG | 1 cut(s) | 279 |
| Eco91I | GGTNACC | 1 cut(s) | 442 |
| EcoO109I | RGGNCCY | 1 cut(s) | 72 |
| EcoO65I | GGTNACC | 1 cut(s) | 442 |
| EcoRII | CCWGG | 2 cut(s) | 492, 892 |
| EcoT22I | ATGCAT | 1 cut(s) | 739 |
| FaeI | CATG | 4 cut(s) | 542, 584, 665, 976 |
| FaqI | GGGAC | 3 cut(s) | 50, 85, 801 |
| FatI | CATG | 4 cut(s) | 538, 580, 661, 972 |
| Fnu4HI | GCNGC | 2 cut(s) | 300, 357 |
| FokI | GGATG | 2 cut(s) | 155, 724 |
| Fsp4HI | GCNGC | 2 cut(s) | 300, 357 |
| FspBI | CTAG | 3 cut(s) | 390, 606, 921 |
| GlaI | GCGC | 1 cut(s) | 256 |
| GluI | GCNGC | 2 cut(s) | 300, 357 |
| GsaI | CCCAGC | 1 cut(s) | 288 |
| HaeII | RGCGCY | 1 cut(s) | 258 |
| HaeIII | GGCC | 5 cut(s) | 59, 95, 271, 289, 697 |
| HapII | CCGG | 5 cut(s) | 69, 219, 272, 280, 506 |
| HhaI | GCGC | 1 cut(s) | 257 |
| Hin1II | CATG | 4 cut(s) | 542, 584, 665, 976 |
| Hin6I | GCGC | 1 cut(s) | 255 |
| HinP1I | GCGC | 1 cut(s) | 255 |
| HindIII | AAGCTT | 1 cut(s) | 407 |
| HinfI | GANTC | 5 cut(s) | 209, 231, 386, 393, 413 |
| HpaII | CCGG | 5 cut(s) | 69, 219, 272, 280, 506 |
| HphI | GGTGA | 1 cut(s) | 335 |
| Hpy166II | GTNNAC | 2 cut(s) | 597, 941 |
| Hpy188I | TCNGA | 4 cut(s) | 181, 208, 236, 427 |
| Hpy188III | TCNNGA | 7 cut(s) | 154, 188, 390, 556, 606, 616, 676 |
| Hpy8I | GTNNAC | 2 cut(s) | 597, 941 |
| Hpy99I | CGWCG | 2 cut(s) | 185, 334 |
| HpyAV | CCTTC | 2 cut(s) | 70, 741 |
| HpyCH4III | ACNGT | 4 cut(s) | 119, 185, 437, 577 |
| HpyCH4IV | ACGT | 5 cut(s) | 310, 790, 850, 868, 937 |
| HpyCH4V | TGCA | 3 cut(s) | 737, 753, 941 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 134, 365 |
| HpyF3I | CTNAG | 4 cut(s) | 86, 654, 708, 768 |
| HpySE526I | ACGT | 5 cut(s) | 310, 790, 850, 868, 937 |
| Hsp92II | CATG | 4 cut(s) | 542, 584, 665, 976 |
| HspAI | GCGC | 1 cut(s) | 255 |
| Kzo9I | GATC | 6 cut(s) | 20, 41, 150, 162, 508, 612 |
| LguI | GCTCTTC | 1 cut(s) | 571 |
| LmnI | GCTCC | 3 cut(s) | 71, 209, 320 |
| LweI | GCATC | 2 cut(s) | 124, 746 |
| MaeI | CTAG | 3 cut(s) | 390, 606, 921 |
| MaeII | ACGT | 5 cut(s) | 310, 790, 850, 868, 937 |
| MaeIII | GTNAC | 1 cut(s) | 442 |
| MalI | GATC | 6 cut(s) | 22, 43, 152, 164, 510, 614 |
| MbiI | CCGCTC | 1 cut(s) | 302 |
| MboI | GATC | 6 cut(s) | 20, 41, 150, 162, 508, 612 |
| MboII | GAAGA | 5 cut(s) | 157, 203, 206, 558, 833 |
| MflI | RGATCY | 1 cut(s) | 41 |
| MhlI | GDGCHC | 1 cut(s) | 943 |
| MluCI | AATT | 4 cut(s) | 682, 688, 727, 947 |
| MlyI | GAGTC | 2 cut(s) | 387, 407 |
| MmeI | TCCRAC | 3 cut(s) | 204, 259, 342 |
| Mph1103I | ATGCAT | 1 cut(s) | 739 |
| MseI | TTAA | 1 cut(s) | 950 |
| MslI | CAYNNNNRTG | 1 cut(s) | 674 |
| MspI | CCGG | 5 cut(s) | 69, 219, 272, 280, 506 |
| MspR9I | CCNGG | 7 cut(s) | 70, 219, 280, 281, 494, 506, 894 |
| MvaI | CCWGG | 2 cut(s) | 494, 894 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 134, 365 |
| NciI | CCSGG | 5 cut(s) | 70, 219, 280, 281, 506 |
| NdeII | GATC | 6 cut(s) | 20, 41, 150, 162, 508, 612 |
| NlaIII | CATG | 4 cut(s) | 542, 584, 665, 976 |
| NlaIV | GGNNCC | 5 cut(s) | 73, 498, 764, 798, 910 |
| NmeAIII | GCCGAG | 1 cut(s) | 315 |
| NsiI | ATGCAT | 1 cut(s) | 739 |
| NspI | RCATGY | 2 cut(s) | 542, 976 |
| PceI | AGGCCT | 2 cut(s) | 59, 697 |
| PciI | ACATGT | 1 cut(s) | 972 |
| PciSI | GCTCTTC | 1 cut(s) | 571 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 232, 934 |
| PfeI | GAWTC | 3 cut(s) | 209, 231, 386 |
| PfoI | TCCNGGA | 1 cut(s) | 68 |
| PkrI | GCNGC | 2 cut(s) | 301, 358 |
| PleI | GAGTC | 2 cut(s) | 387, 407 |
| PmaCI | CACGTG | 3 cut(s) | 311, 851, 869 |
| PmlI | CACGTG | 3 cut(s) | 311, 851, 869 |
| PpsI | GAGTC | 2 cut(s) | 387, 407 |
| Ppu21I | YACGTR | 3 cut(s) | 311, 851, 869 |
| PpuMI | RGGWCCY | 1 cut(s) | 72 |
| PscI | ACATGT | 1 cut(s) | 972 |
| PshAI | GACNNNNGTC | 1 cut(s) | 975 |
| PsiI | TTATAA | 2 cut(s) | 687, 732 |
| Psp5II | RGGWCCY | 1 cut(s) | 72 |
| Psp6I | CCWGG | 2 cut(s) | 492, 892 |
| PspCI | CACGTG | 3 cut(s) | 311, 851, 869 |
| PspEI | GGTNACC | 1 cut(s) | 442 |
| PspFI | CCCAGC | 1 cut(s) | 284 |
| PspGI | CCWGG | 2 cut(s) | 492, 892 |
| PspN4I | GGNNCC | 5 cut(s) | 73, 498, 764, 798, 910 |
| PspPI | GGNCC | 5 cut(s) | 72, 94, 269, 287, 797 |
| PspPPI | RGGWCCY | 1 cut(s) | 72 |
| PsuI | RGATCY | 1 cut(s) | 41 |
| RseI | CAYNNNNRTG | 1 cut(s) | 674 |
| SapI | GCTCTTC | 1 cut(s) | 571 |
| SaqAI | TTAA | 1 cut(s) | 950 |
| SatI | GCNGC | 2 cut(s) | 300, 357 |
| Sau3AI | GATC | 6 cut(s) | 20, 41, 150, 162, 508, 612 |
| Sau96I | GGNCC | 5 cut(s) | 72, 94, 269, 287, 797 |
| SchI | GAGTC | 2 cut(s) | 387, 407 |
| ScrFI | CCNGG | 7 cut(s) | 70, 219, 280, 281, 494, 506, 894 |
| SduI | GDGCHC | 1 cut(s) | 943 |
| SfaNI | GCATC | 2 cut(s) | 124, 746 |
| SfcI | CTRYAG | 2 cut(s) | 573, 648 |
| SinI | GGWCC | 2 cut(s) | 72, 797 |
| SmaI | CCCGGG | 1 cut(s) | 281 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 674 |
| Sse9I | AATT | 4 cut(s) | 682, 688, 727, 947 |
| SseBI | AGGCCT | 2 cut(s) | 59, 697 |
| SsiI | CCGC | 5 cut(s) | 300, 318, 356, 808, 842 |
| SspI | AATATT | 1 cut(s) | 480 |
| SspMI | CTAG | 3 cut(s) | 390, 606, 921 |
| StuI | AGGCCT | 2 cut(s) | 59, 697 |
| StyD4I | CCNGG | 7 cut(s) | 68, 217, 278, 279, 492, 504, 892 |
| TaaI | ACNGT | 4 cut(s) | 119, 185, 437, 577 |
| TaiI | ACGT | 5 cut(s) | 313, 793, 853, 871, 940 |
| TaqI | TCGA | 4 cut(s) | 19, 153, 380, 396 |
| TasI | AATT | 4 cut(s) | 682, 688, 727, 947 |
| TauI | GCSGC | 2 cut(s) | 302, 359 |
| TfiI | GAWTC | 3 cut(s) | 209, 231, 386 |
| Tru1I | TTAA | 1 cut(s) | 950 |
| Tru9I | TTAA | 1 cut(s) | 950 |
| TspDTI | ATGAA | 5 cut(s) | 157, 261, 399, 614, 707 |
| TspGWI | ACGGA | 2 cut(s) | 54, 625 |
| TspMI | CCCGGG | 1 cut(s) | 279 |
| VneI | GTGCAC | 1 cut(s) | 939 |
| VpaK11BI | GGWCC | 2 cut(s) | 72, 797 |
| XbaI | TCTAGA | 2 cut(s) | 389, 605 |
| XceI | RCATGY | 2 cut(s) | 542, 976 |
| XmaI | CCCGGG | 1 cut(s) | 279 |
| XspI | CTAG | 3 cut(s) | 390, 606, 921 |
| Zsp2I | ATGCAT | 1 cut(s) | 739 |