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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 549 |
| AccIII | TCCGGA | 1 cut(s) | 529 |
| AciI | CCGC | 1 cut(s) | 126 |
| AclI | AACGTT | 1 cut(s) | 279 |
| AclWI | GGATC | 3 cut(s) | 64, 76, 77 |
| AcsI | RAATTY | 1 cut(s) | 308 |
| AcyI | GRCGYC | 1 cut(s) | 565 |
| AfaI | GTAC | 1 cut(s) | 221 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 31, 229 |
| AflII | CTTAAG | 1 cut(s) | 56 |
| AgsI | TTSAA | 1 cut(s) | 134 |
| AjnI | CCWGG | 1 cut(s) | 567 |
| AluBI | AGCT | 5 cut(s) | 122, 146, 167, 442, 464 |
| AluI | AGCT | 5 cut(s) | 122, 146, 167, 442, 464 |
| Alw26I | GTCTC | 1 cut(s) | 376 |
| AlwI | GGATC | 3 cut(s) | 64, 76, 77 |
| Ama87I | CYCGRG | 1 cut(s) | 260 |
| Aor13HI | TCCGGA | 1 cut(s) | 529 |
| AoxI | GGCC | 1 cut(s) | 156 |
| ApeKI | GCWGC | 1 cut(s) | 122 |
| ApoI | RAATTY | 1 cut(s) | 308 |
| AspLEI | GCGC | 4 cut(s) | 17, 48, 208, 551 |
| AspS9I | GGNCC | 1 cut(s) | 34 |
| AvaI | CYCGRG | 1 cut(s) | 260 |
| AvaII | GGWCC | 1 cut(s) | 34 |
| BamHI | GGATCC | 1 cut(s) | 69 |
| BbsI | GAAGAC | 1 cut(s) | 240 |
| BbvI | GCAGC | 1 cut(s) | 109 |
| BccI | CCATC | 1 cut(s) | 298 |
| BciT130I | CCWGG | 1 cut(s) | 569 |
| BciVI | GTATCC | 1 cut(s) | 14 |
| BclI | TGATCA | 1 cut(s) | 342 |
| BcoDI | GTCTC | 1 cut(s) | 376 |
| BfaI | CTAG | 2 cut(s) | 74, 504 |
| BfrI | CTTAAG | 1 cut(s) | 56 |
| BfuI | GTATCC | 1 cut(s) | 14 |
| BisI | GCNGC | 2 cut(s) | 123, 126 |
| BlsI | GCNGC | 2 cut(s) | 124, 127 |
| Bme1390I | CCNGG | 1 cut(s) | 569 |
| Bme18I | GGWCC | 1 cut(s) | 34 |
| BmeT110I | CYCGRG | 1 cut(s) | 260 |
| BmgT120I | GGNCC | 1 cut(s) | 34 |
| BmiI | GGNNCC | 3 cut(s) | 35, 71, 451 |
| BmrFI | CCNGG | 1 cut(s) | 569 |
| BmsI | GCATC | 3 cut(s) | 61, 193, 432 |
| BpiI | GAAGAC | 1 cut(s) | 240 |
| BpmI | CTGGAG | 1 cut(s) | 23 |
| BsaBI | GATNNNNATC | 1 cut(s) | 341 |
| BsaHI | GRCGYC | 1 cut(s) | 565 |
| BsaJI | CCNNGG | 1 cut(s) | 510 |
| BsaWI | WCCGGW | 1 cut(s) | 529 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 31, 229 |
| Bse8I | GATNNNNATC | 1 cut(s) | 341 |
| BseAI | TCCGGA | 1 cut(s) | 529 |
| BseBI | CCWGG | 1 cut(s) | 569 |
| BseDI | CCNNGG | 1 cut(s) | 510 |
| BseJI | GATNNNNATC | 1 cut(s) | 341 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 31, 229 |
| BseRI | GAGGAG | 1 cut(s) | 102 |
| BseXI | GCAGC | 1 cut(s) | 109 |
| Bsh1236I | CGCG | 1 cut(s) | 549 |
| BshFI | GGCC | 1 cut(s) | 158 |
| BsiHKCI | CYCGRG | 1 cut(s) | 260 |
| BsiSI | CCGG | 1 cut(s) | 530 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 31, 229 |
| BsmAI | GTCTC | 1 cut(s) | 376 |
| BsmBI | CGTCTC | 1 cut(s) | 376 |
| BsnI | GGCC | 1 cut(s) | 158 |
| BsoBI | CYCGRG | 1 cut(s) | 260 |
| Bsp13I | TCCGGA | 1 cut(s) | 529 |
| Bsp143I | GATC | 3 cut(s) | 69, 81, 342 |
| BspACI | CCGC | 1 cut(s) | 126 |
| BspANI | GGCC | 1 cut(s) | 158 |
| BspEI | TCCGGA | 1 cut(s) | 529 |
| BspFNI | CGCG | 1 cut(s) | 549 |
| BspHI | TCATGA | 2 cut(s) | 183, 436 |
| BspLI | GGNNCC | 3 cut(s) | 35, 71, 451 |
| BspPI | GGATC | 3 cut(s) | 64, 76, 77 |
| BspTI | CTTAAG | 1 cut(s) | 56 |
| BssECI | CCNNGG | 1 cut(s) | 510 |
| BssMI | GATC | 3 cut(s) | 69, 81, 342 |
| BssNI | GRCGYC | 1 cut(s) | 565 |
| Bst2UI | CCWGG | 1 cut(s) | 569 |
| Bst6I | CTCTTC | 1 cut(s) | 129 |
| BstACI | GRCGYC | 1 cut(s) | 565 |
| BstAFI | CTTAAG | 1 cut(s) | 56 |
| BstC8I | GCNNGC | 1 cut(s) | 50 |
| BstDEI | CTNAG | 1 cut(s) | 555 |
| BstDSI | CCRYGG | 1 cut(s) | 510 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 227 |
| BstFNI | CGCG | 1 cut(s) | 549 |
| BstHHI | GCGC | 4 cut(s) | 17, 48, 208, 551 |
| BstKTI | GATC | 3 cut(s) | 72, 84, 345 |
| BstMAI | GTCTC | 1 cut(s) | 376 |
| BstMBI | GATC | 3 cut(s) | 69, 81, 342 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 164 |
| BstNI | CCWGG | 1 cut(s) | 569 |
| BstSCI | CCNGG | 1 cut(s) | 567 |
| BstUI | CGCG | 1 cut(s) | 549 |
| BstV1I | GCAGC | 1 cut(s) | 109 |
| BstV2I | GAAGAC | 1 cut(s) | 240 |
| BstX2I | RGATCY | 1 cut(s) | 69 |
| BstYI | RGATCY | 1 cut(s) | 69 |
| BsuI | GTATCC | 1 cut(s) | 14 |
| BsuRI | GGCC | 1 cut(s) | 158 |
| BtgI | CCRYGG | 1 cut(s) | 510 |
| BtsI | GCAGTG | 1 cut(s) | 272 |
| BtsIMutI | CAGTG | 2 cut(s) | 272, 327 |
| Cac8I | GCNNGC | 1 cut(s) | 50 |
| CciI | TCATGA | 2 cut(s) | 183, 436 |
| CfoI | GCGC | 4 cut(s) | 17, 48, 208, 551 |
| Cfr13I | GGNCC | 1 cut(s) | 34 |
| Csp6I | GTAC | 1 cut(s) | 220 |
| CviAII | CATG | 6 cut(s) | 184, 196, 391, 437, 454, 473 |
| CviJI | RGCY | 9 cut(s) | 91, 122, 146, 158, 167, 389, 442, 452, 464 |
| CviKI_1 | RGCY | 9 cut(s) | 91, 122, 146, 158, 167, 389, 442, 452, 464 |
| CviQI | GTAC | 1 cut(s) | 220 |
| DdeI | CTNAG | 1 cut(s) | 555 |
| DpnI | GATC | 3 cut(s) | 71, 83, 344 |
| DpnII | GATC | 3 cut(s) | 69, 81, 342 |
| Eam1104I | CTCTTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 1 cut(s) | 129 |
| Eco47I | GGWCC | 1 cut(s) | 34 |
| Eco88I | CYCGRG | 1 cut(s) | 260 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 227 |
| EcoRII | CCWGG | 1 cut(s) | 567 |
| Esp3I | CGTCTC | 1 cut(s) | 376 |
| FaeI | CATG | 6 cut(s) | 187, 199, 394, 440, 457, 476 |
| FatI | CATG | 6 cut(s) | 183, 195, 390, 436, 453, 472 |
| FbaI | TGATCA | 1 cut(s) | 342 |
| Fnu4HI | GCNGC | 2 cut(s) | 123, 126 |
| Fsp4HI | GCNGC | 2 cut(s) | 123, 126 |
| FspBI | CTAG | 2 cut(s) | 74, 504 |
| GlaI | GCGC | 4 cut(s) | 16, 47, 207, 550 |
| GluI | GCNGC | 2 cut(s) | 123, 126 |
| GsuI | CTGGAG | 1 cut(s) | 23 |
| HaeIII | GGCC | 1 cut(s) | 158 |
| HapII | CCGG | 1 cut(s) | 530 |
| HhaI | GCGC | 4 cut(s) | 17, 48, 208, 551 |
| Hin1I | GRCGYC | 1 cut(s) | 565 |
| Hin1II | CATG | 6 cut(s) | 187, 199, 394, 440, 457, 476 |
| Hin6I | GCGC | 4 cut(s) | 15, 46, 206, 549 |
| HinP1I | GCGC | 4 cut(s) | 15, 46, 206, 549 |
| HinfI | GANTC | 2 cut(s) | 352, 533 |
| HpaII | CCGG | 1 cut(s) | 530 |
| Hpy188I | TCNGA | 2 cut(s) | 99, 402 |
| Hpy188III | TCNNGA | 5 cut(s) | 184, 346, 437, 504, 530 |
| HpyAV | CCTTC | 1 cut(s) | 373 |
| HpyCH4IV | ACGT | 3 cut(s) | 102, 279, 459 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 164 |
| HpyF3I | CTNAG | 1 cut(s) | 555 |
| HpySE526I | ACGT | 3 cut(s) | 102, 279, 459 |
| Hsp92I | GRCGYC | 1 cut(s) | 565 |
| Hsp92II | CATG | 6 cut(s) | 187, 199, 394, 440, 457, 476 |
| HspAI | GCGC | 4 cut(s) | 15, 46, 206, 549 |
| Kpn2I | TCCGGA | 1 cut(s) | 529 |
| Ksp22I | TGATCA | 1 cut(s) | 342 |
| Kzo9I | GATC | 3 cut(s) | 69, 81, 342 |
| LmnI | GCTCC | 3 cut(s) | 213, 449, 515 |
| LpnPI | CCDG | 4 cut(s) | 3, 62, 543, 554 |
| Lsp1109I | GCAGC | 1 cut(s) | 109 |
| LweI | GCATC | 3 cut(s) | 61, 193, 432 |
| MaeI | CTAG | 2 cut(s) | 74, 504 |
| MaeII | ACGT | 3 cut(s) | 102, 279, 459 |
| MalI | GATC | 3 cut(s) | 71, 83, 344 |
| MboI | GATC | 3 cut(s) | 69, 81, 342 |
| MboII | GAAGA | 4 cut(s) | 146, 245, 361, 502 |
| MflI | RGATCY | 1 cut(s) | 69 |
| MluCI | AATT | 4 cut(s) | 177, 308, 525, 538 |
| MlyI | GAGTC | 1 cut(s) | 542 |
| MnlI | CCTC | 5 cut(s) | 123, 148, 233, 554, 562 |
| MroI | TCCGGA | 1 cut(s) | 529 |
| MseI | TTAA | 2 cut(s) | 57, 444 |
| MslI | CAYNNNNRTG | 3 cut(s) | 198, 332, 485 |
| MspCI | CTTAAG | 1 cut(s) | 56 |
| MspI | CCGG | 1 cut(s) | 530 |
| MspR9I | CCNGG | 1 cut(s) | 569 |
| MvaI | CCWGG | 1 cut(s) | 569 |
| MvnI | CGCG | 1 cut(s) | 549 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 164 |
| NdeII | GATC | 3 cut(s) | 69, 81, 342 |
| NlaIII | CATG | 6 cut(s) | 187, 199, 394, 440, 457, 476 |
| NlaIV | GGNNCC | 3 cut(s) | 35, 71, 451 |
| PaeR7I | CTCGAG | 1 cut(s) | 260 |
| PagI | TCATGA | 2 cut(s) | 183, 436 |
| PfeI | GAWTC | 1 cut(s) | 352 |
| PkrI | GCNGC | 2 cut(s) | 124, 127 |
| PleI | GAGTC | 1 cut(s) | 541 |
| PpsI | GAGTC | 1 cut(s) | 541 |
| Psp1406I | AACGTT | 1 cut(s) | 279 |
| Psp6I | CCWGG | 1 cut(s) | 567 |
| PspGI | CCWGG | 1 cut(s) | 567 |
| PspN4I | GGNNCC | 3 cut(s) | 35, 71, 451 |
| PspPI | GGNCC | 1 cut(s) | 34 |
| PspXI | VCTCGAGB | 1 cut(s) | 260 |
| PsuI | RGATCY | 1 cut(s) | 69 |
| RsaI | GTAC | 1 cut(s) | 221 |
| RsaNI | GTAC | 1 cut(s) | 220 |
| RseI | CAYNNNNRTG | 3 cut(s) | 198, 332, 485 |
| SaqAI | TTAA | 2 cut(s) | 57, 444 |
| SatI | GCNGC | 2 cut(s) | 123, 126 |
| Sau3AI | GATC | 3 cut(s) | 69, 81, 342 |
| Sau96I | GGNCC | 1 cut(s) | 34 |
| SchI | GAGTC | 1 cut(s) | 542 |
| ScrFI | CCNGG | 1 cut(s) | 569 |
| SfaNI | GCATC | 3 cut(s) | 61, 193, 432 |
| Sfr274I | CTCGAG | 1 cut(s) | 260 |
| SinI | GGWCC | 1 cut(s) | 34 |
| SlaI | CTCGAG | 1 cut(s) | 260 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 198, 332, 485 |
| SmlI | CTYRAG | 2 cut(s) | 56, 260 |
| SmoI | CTYRAG | 2 cut(s) | 56, 260 |
| Sse9I | AATT | 4 cut(s) | 177, 308, 525, 538 |
| SsiI | CCGC | 1 cut(s) | 126 |
| SspMI | CTAG | 2 cut(s) | 74, 504 |
| StyD4I | CCNGG | 1 cut(s) | 567 |
| TaiI | ACGT | 3 cut(s) | 105, 282, 462 |
| TaqI | TCGA | 2 cut(s) | 261, 417 |
| TasI | AATT | 4 cut(s) | 177, 308, 525, 538 |
| TauI | GCSGC | 1 cut(s) | 128 |
| TfiI | GAWTC | 1 cut(s) | 352 |
| Tru1I | TTAA | 2 cut(s) | 57, 444 |
| Tru9I | TTAA | 2 cut(s) | 57, 444 |
| TscAI | CASTG | 2 cut(s) | 272, 334 |
| TseI | GCWGC | 1 cut(s) | 122 |
| TspDTI | ATGAA | 4 cut(s) | 212, 407, 425, 470 |
| TspGWI | ACGGA | 1 cut(s) | 26 |
| TspRI | CASTG | 2 cut(s) | 272, 334 |
| Vha464I | CTTAAG | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 1 cut(s) | 34 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 227 |
| XapI | RAATTY | 1 cut(s) | 308 |
| XbaI | TCTAGA | 1 cut(s) | 503 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 246 |
| XhoI | CTCGAG | 1 cut(s) | 260 |
| XspI | CTAG | 2 cut(s) | 74, 504 |