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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 270 |
| AccII | CGCG | 3 cut(s) | 307, 459, 549 |
| AciI | CCGC | 4 cut(s) | 61, 457, 459, 547 |
| AclWI | GGATC | 1 cut(s) | 487 |
| AcoI | YGGCCR | 1 cut(s) | 391 |
| AcsI | RAATTY | 1 cut(s) | 183 |
| AcuI | CTGAAG | 1 cut(s) | 210 |
| AfaI | GTAC | 2 cut(s) | 59, 497 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 67 |
| AgeI | ACCGGT | 1 cut(s) | 77 |
| AgsI | TTSAA | 4 cut(s) | 162, 213, 289, 631 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 252, 284 |
| AluBI | AGCT | 7 cut(s) | 103, 380, 512, 556, 562, 569, 602 |
| AluI | AGCT | 7 cut(s) | 103, 380, 512, 556, 562, 569, 602 |
| Alw26I | GTCTC | 2 cut(s) | 636, 650 |
| AlwI | GGATC | 1 cut(s) | 487 |
| Ama87I | CYCGRG | 2 cut(s) | 5, 438 |
| AoxI | GGCC | 7 cut(s) | 164, 313, 322, 346, 355, 373, 391 |
| ApoI | RAATTY | 1 cut(s) | 183 |
| AsiGI | ACCGGT | 1 cut(s) | 77 |
| AspLEI | GCGC | 1 cut(s) | 225 |
| AspS9I | GGNCC | 2 cut(s) | 272, 295 |
| AsuC2I | CCSGG | 1 cut(s) | 29 |
| AsuNHI | GCTAGC | 1 cut(s) | 512 |
| AvaI | CYCGRG | 2 cut(s) | 5, 438 |
| AvaII | GGWCC | 2 cut(s) | 272, 295 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 41, 74 |
| BccI | CCATC | 1 cut(s) | 584 |
| BclI | TGATCA | 1 cut(s) | 529 |
| BcnI | CCSGG | 1 cut(s) | 29 |
| BcoDI | GTCTC | 2 cut(s) | 636, 650 |
| BfaI | CTAG | 2 cut(s) | 513, 563 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 321, 354, 363 |
| Bme1390I | CCNGG | 1 cut(s) | 29 |
| Bme18I | GGWCC | 2 cut(s) | 272, 295 |
| BmeT110I | CYCGRG | 2 cut(s) | 5, 438 |
| BmgT120I | GGNCC | 2 cut(s) | 272, 295 |
| BmiI | GGNNCC | 2 cut(s) | 33, 236 |
| BmrFI | CCNGG | 1 cut(s) | 29 |
| BmsI | GCATC | 1 cut(s) | 311 |
| BmtI | GCTAGC | 1 cut(s) | 516 |
| Bpu10I | CCTNAGC | 1 cut(s) | 423 |
| BpuEI | CTTGAG | 1 cut(s) | 578 |
| BpuMI | CCSGG | 1 cut(s) | 29 |
| BsaBI | GATNNNNATC | 2 cut(s) | 478, 609 |
| BsaJI | CCNNGG | 4 cut(s) | 316, 325, 358, 457 |
| BsaWI | WCCGGW | 2 cut(s) | 77, 661 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 67 |
| Bse118I | RCCGGY | 1 cut(s) | 77 |
| Bse3DI | GCAATG | 2 cut(s) | 70, 502 |
| Bse8I | GATNNNNATC | 2 cut(s) | 478, 609 |
| BseDI | CCNNGG | 4 cut(s) | 316, 325, 358, 457 |
| BseJI | GATNNNNATC | 2 cut(s) | 478, 609 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 67 |
| BseMI | GCAATG | 2 cut(s) | 70, 502 |
| BseRI | GAGGAG | 1 cut(s) | 375 |
| Bsh1236I | CGCG | 3 cut(s) | 307, 459, 549 |
| BshFI | GGCC | 7 cut(s) | 166, 315, 324, 348, 357, 375, 393 |
| BshTI | ACCGGT | 1 cut(s) | 77 |
| BsiHKCI | CYCGRG | 2 cut(s) | 5, 438 |
| BsiSI | CCGG | 3 cut(s) | 29, 78, 662 |
| BslFI | GGGAC | 3 cut(s) | 187, 349, 534 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 67 |
| BsmAI | GTCTC | 2 cut(s) | 636, 650 |
| BsmFI | GGGAC | 3 cut(s) | 187, 349, 534 |
| BsnI | GGCC | 7 cut(s) | 166, 315, 324, 348, 357, 375, 393 |
| BsoBI | CYCGRG | 2 cut(s) | 5, 438 |
| Bsp143I | GATC | 2 cut(s) | 479, 529 |
| Bsp19I | CCATGG | 1 cut(s) | 316 |
| BspACI | CCGC | 4 cut(s) | 61, 457, 459, 547 |
| BspANI | GGCC | 7 cut(s) | 166, 315, 324, 348, 357, 375, 393 |
| BspFNI | CGCG | 3 cut(s) | 307, 459, 549 |
| BspLI | GGNNCC | 2 cut(s) | 33, 236 |
| BspOI | GCTAGC | 1 cut(s) | 516 |
| BspPI | GGATC | 1 cut(s) | 487 |
| BsrDI | GCAATG | 2 cut(s) | 70, 502 |
| BsrFI | RCCGGY | 1 cut(s) | 77 |
| BssAI | RCCGGY | 1 cut(s) | 77 |
| BssECI | CCNNGG | 4 cut(s) | 316, 325, 358, 457 |
| BssMI | GATC | 2 cut(s) | 479, 529 |
| BssT1I | CCWWGG | 1 cut(s) | 316 |
| Bst6I | CTCTTC | 1 cut(s) | 346 |
| BstC8I | GCNNGC | 1 cut(s) | 514 |
| BstDEI | CTNAG | 1 cut(s) | 423 |
| BstDSI | CCRYGG | 2 cut(s) | 316, 457 |
| BstFNI | CGCG | 3 cut(s) | 307, 459, 549 |
| BstHHI | GCGC | 1 cut(s) | 225 |
| BstKTI | GATC | 2 cut(s) | 482, 532 |
| BstMAI | GTCTC | 2 cut(s) | 636, 650 |
| BstMBI | GATC | 2 cut(s) | 479, 529 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 321, 354, 363, 372, 404, 465, 513 |
| BstSCI | CCNGG | 1 cut(s) | 27 |
| BstUI | CGCG | 3 cut(s) | 307, 459, 549 |
| BsuRI | GGCC | 7 cut(s) | 166, 315, 324, 348, 357, 375, 393 |
| BtgI | CCRYGG | 2 cut(s) | 316, 457 |
| BtgZI | GCGATG | 1 cut(s) | 288 |
| Cac8I | GCNNGC | 1 cut(s) | 514 |
| CfoI | GCGC | 1 cut(s) | 225 |
| Cfr10I | RCCGGY | 1 cut(s) | 77 |
| Cfr13I | GGNCC | 2 cut(s) | 272, 295 |
| Cfr42I | CCGCGG | 1 cut(s) | 460 |
| Csp6I | GTAC | 2 cut(s) | 58, 496 |
| CspAI | ACCGGT | 1 cut(s) | 77 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 457, 492 |
| CviAII | CATG | 2 cut(s) | 134, 317 |
| CviQI | GTAC | 2 cut(s) | 58, 496 |
| DdeI | CTNAG | 1 cut(s) | 423 |
| DpnI | GATC | 2 cut(s) | 481, 531 |
| DpnII | GATC | 2 cut(s) | 479, 529 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 270 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 270 |
| EaeI | YGGCCR | 1 cut(s) | 391 |
| Eam1104I | CTCTTC | 1 cut(s) | 346 |
| EarI | CTCTTC | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 1 cut(s) | 316 |
| Eco47I | GGWCC | 2 cut(s) | 272, 295 |
| Eco57I | CTGAAG | 1 cut(s) | 210 |
| Eco88I | CYCGRG | 2 cut(s) | 5, 438 |
| EcoT14I | CCWWGG | 1 cut(s) | 316 |
| ErhI | CCWWGG | 1 cut(s) | 316 |
| FaeI | CATG | 2 cut(s) | 137, 320 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 252, 284 |
| FaqI | GGGAC | 3 cut(s) | 187, 349, 534 |
| FatI | CATG | 2 cut(s) | 133, 316 |
| FbaI | TGATCA | 1 cut(s) | 529 |
| FspBI | CTAG | 2 cut(s) | 513, 563 |
| GlaI | GCGC | 1 cut(s) | 224 |
| HaeIII | GGCC | 7 cut(s) | 166, 315, 324, 348, 357, 375, 393 |
| HapII | CCGG | 3 cut(s) | 29, 78, 662 |
| HhaI | GCGC | 1 cut(s) | 225 |
| Hin1II | CATG | 2 cut(s) | 137, 320 |
| Hin6I | GCGC | 1 cut(s) | 223 |
| HinP1I | GCGC | 1 cut(s) | 223 |
| HindIII | AAGCTT | 2 cut(s) | 554, 567 |
| HinfI | GANTC | 2 cut(s) | 43, 644 |
| HpaII | CCGG | 3 cut(s) | 29, 78, 662 |
| Hpy188I | TCNGA | 1 cut(s) | 111 |
| Hpy188III | TCNNGA | 4 cut(s) | 7, 188, 289, 440 |
| HpyAV | CCTTC | 4 cut(s) | 34, 254, 286, 338 |
| HpyCH4V | TGCA | 5 cut(s) | 38, 50, 125, 468, 507 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 321, 354, 363, 372, 404, 465, 513 |
| HpyF3I | CTNAG | 1 cut(s) | 423 |
| Hsp92II | CATG | 2 cut(s) | 137, 320 |
| HspAI | GCGC | 1 cut(s) | 223 |
| Ksp22I | TGATCA | 1 cut(s) | 529 |
| KspI | CCGCGG | 1 cut(s) | 460 |
| Kzo9I | GATC | 2 cut(s) | 479, 529 |
| LpnPI | CCDG | 5 cut(s) | 42, 48, 91, 132, 201 |
| LweI | GCATC | 1 cut(s) | 311 |
| MaeI | CTAG | 2 cut(s) | 513, 563 |
| MalI | GATC | 2 cut(s) | 481, 531 |
| MboI | GATC | 2 cut(s) | 479, 529 |
| MboII | GAAGA | 3 cut(s) | 264, 363, 599 |
| MfeI | CAATTG | 1 cut(s) | 168 |
| MluCI | AATT | 4 cut(s) | 168, 183, 463, 633 |
| MlyI | GAGTC | 1 cut(s) | 638 |
| MseI | TTAA | 1 cut(s) | 96 |
| MslI | CAYNNNNRTG | 1 cut(s) | 146 |
| MspA1I | CMGCKG | 1 cut(s) | 459 |
| MspI | CCGG | 3 cut(s) | 29, 78, 662 |
| MspR9I | CCNGG | 1 cut(s) | 29 |
| MunI | CAATTG | 1 cut(s) | 168 |
| MvnI | CGCG | 3 cut(s) | 307, 459, 549 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 321, 354, 363, 372, 404, 465, 513 |
| NciI | CCSGG | 1 cut(s) | 29 |
| NcoI | CCATGG | 1 cut(s) | 316 |
| NdeII | GATC | 2 cut(s) | 479, 529 |
| NheI | GCTAGC | 1 cut(s) | 512 |
| NlaIII | CATG | 2 cut(s) | 137, 320 |
| NlaIV | GGNNCC | 2 cut(s) | 33, 236 |
| NmeAIII | GCCGAG | 4 cut(s) | 350, 383, 401, 419 |
| PaeR7I | CTCGAG | 2 cut(s) | 5, 438 |
| PfeI | GAWTC | 1 cut(s) | 43 |
| PinAI | ACCGGT | 1 cut(s) | 77 |
| PleI | GAGTC | 1 cut(s) | 638 |
| PpsI | GAGTC | 1 cut(s) | 638 |
| PspN4I | GGNNCC | 2 cut(s) | 33, 236 |
| PspPI | GGNCC | 2 cut(s) | 272, 295 |
| RsaI | GTAC | 2 cut(s) | 59, 497 |
| RsaNI | GTAC | 2 cut(s) | 58, 496 |
| RseI | CAYNNNNRTG | 1 cut(s) | 146 |
| SacII | CCGCGG | 1 cut(s) | 460 |
| SaqAI | TTAA | 1 cut(s) | 96 |
| Sau3AI | GATC | 2 cut(s) | 479, 529 |
| Sau96I | GGNCC | 2 cut(s) | 272, 295 |
| SchI | GAGTC | 1 cut(s) | 638 |
| ScrFI | CCNGG | 1 cut(s) | 29 |
| SfaNI | GCATC | 1 cut(s) | 311 |
| SfiI | GGCCNNNNNGGCC | 2 cut(s) | 321, 354 |
| Sfr274I | CTCGAG | 2 cut(s) | 5, 438 |
| Sfr303I | CCGCGG | 1 cut(s) | 460 |
| SgrBI | CCGCGG | 1 cut(s) | 460 |
| SinI | GGWCC | 2 cut(s) | 272, 295 |
| SlaI | CTCGAG | 2 cut(s) | 5, 438 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 146 |
| SmlI | CTYRAG | 3 cut(s) | 5, 438, 557 |
| SmoI | CTYRAG | 3 cut(s) | 5, 438, 557 |
| Sse9I | AATT | 4 cut(s) | 168, 183, 463, 633 |
| SsiI | CCGC | 4 cut(s) | 61, 457, 459, 547 |
| SspMI | CTAG | 2 cut(s) | 513, 563 |
| StyD4I | CCNGG | 1 cut(s) | 27 |
| StyI | CCWWGG | 1 cut(s) | 316 |
| TaqI | TCGA | 3 cut(s) | 6, 439, 647 |
| TasI | AATT | 4 cut(s) | 168, 183, 463, 633 |
| TfiI | GAWTC | 1 cut(s) | 43 |
| Tru1I | TTAA | 1 cut(s) | 96 |
| Tru9I | TTAA | 1 cut(s) | 96 |
| TspDTI | ATGAA | 2 cut(s) | 447, 594 |
| VpaK11BI | GGWCC | 2 cut(s) | 272, 295 |
| XapI | RAATTY | 1 cut(s) | 183 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 305 |
| XhoI | CTCGAG | 2 cut(s) | 5, 438 |
| XspI | CTAG | 2 cut(s) | 513, 563 |