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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 432 |
| AccB1I | GGYRCC | 2 cut(s) | 620, 701 |
| AccBSI | CCGCTC | 2 cut(s) | 25, 818 |
| AccII | CGCG | 1 cut(s) | 372 |
| AccIII | TCCGGA | 1 cut(s) | 352 |
| AciI | CCGC | 4 cut(s) | 23, 145, 624, 816 |
| AclWI | GGATC | 1 cut(s) | 14 |
| AcoI | YGGCCR | 1 cut(s) | 532 |
| AcsI | RAATTY | 2 cut(s) | 200, 769 |
| AcyI | GRCGYC | 1 cut(s) | 702 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 646, 650 |
| AgsI | TTSAA | 3 cut(s) | 160, 583, 737 |
| AjnI | CCWGG | 1 cut(s) | 643 |
| AluBI | AGCT | 1 cut(s) | 265 |
| AluI | AGCT | 1 cut(s) | 265 |
| Alw21I | GWGCWC | 1 cut(s) | 267 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AlwI | GGATC | 1 cut(s) | 14 |
| Aor13HI | TCCGGA | 1 cut(s) | 352 |
| AoxI | GGCC | 2 cut(s) | 532, 758 |
| ApeKI | GCWGC | 1 cut(s) | 716 |
| ApoI | RAATTY | 2 cut(s) | 200, 769 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspA2I | CCTAGG | 1 cut(s) | 706 |
| AspLEI | GCGC | 4 cut(s) | 374, 548, 589, 704 |
| AspS9I | GGNCC | 2 cut(s) | 434, 759 |
| AsuHPI | GGTGA | 5 cut(s) | 233, 458, 707, 715, 722 |
| AvaII | GGWCC | 1 cut(s) | 434 |
| AvrII | CCTAGG | 1 cut(s) | 706 |
| BalI | TGGCCA | 1 cut(s) | 534 |
| BanI | GGYRCC | 2 cut(s) | 620, 701 |
| BanII | GRGCYC | 1 cut(s) | 267 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 1 cut(s) | 267 |
| BbvI | GCAGC | 1 cut(s) | 703 |
| BccI | CCATC | 5 cut(s) | 126, 573, 611, 692, 696 |
| BciT130I | CCWGG | 1 cut(s) | 645 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 3 cut(s) | 57, 122, 707 |
| BfoI | RGCGCY | 3 cut(s) | 549, 590, 705 |
| BisI | GCNGC | 1 cut(s) | 717 |
| BlnI | CCTAGG | 1 cut(s) | 706 |
| BlsI | GCNGC | 1 cut(s) | 718 |
| Bme1390I | CCNGG | 1 cut(s) | 645 |
| Bme18I | GGWCC | 1 cut(s) | 434 |
| BmgT120I | GGNCC | 2 cut(s) | 434, 759 |
| BmiI | GGNNCC | 4 cut(s) | 389, 488, 622, 703 |
| BmrFI | CCNGG | 1 cut(s) | 645 |
| BmsI | GCATC | 1 cut(s) | 703 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bpu10I | CCTNAGC | 1 cut(s) | 755 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaHI | GRCGYC | 1 cut(s) | 702 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 3 cut(s) | 644, 675, 706 |
| BsaWI | WCCGGW | 1 cut(s) | 352 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 646, 650 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseAI | TCCGGA | 1 cut(s) | 352 |
| BseBI | CCWGG | 1 cut(s) | 645 |
| BseDI | CCNNGG | 3 cut(s) | 644, 675, 706 |
| BseGI | GGATG | 2 cut(s) | 22, 303 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 646, 650 |
| BseMII | CTCAG | 2 cut(s) | 195, 769 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseXI | GCAGC | 1 cut(s) | 703 |
| Bsh1236I | CGCG | 1 cut(s) | 372 |
| BshFI | GGCC | 2 cut(s) | 534, 760 |
| BshNI | GGYRCC | 2 cut(s) | 620, 701 |
| BsiHKAI | GWGCWC | 1 cut(s) | 267 |
| BsiSI | CCGG | 1 cut(s) | 353 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 646, 650 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsnI | GGCC | 2 cut(s) | 534, 760 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 1 cut(s) | 267 |
| Bsp13I | TCCGGA | 1 cut(s) | 352 |
| Bsp143I | GATC | 2 cut(s) | 19, 228 |
| Bsp19I | CCATGG | 1 cut(s) | 675 |
| BspACI | CCGC | 4 cut(s) | 23, 145, 624, 816 |
| BspANI | GGCC | 2 cut(s) | 534, 760 |
| BspCNI | CTCAG | 2 cut(s) | 194, 768 |
| BspEI | TCCGGA | 1 cut(s) | 352 |
| BspFNI | CGCG | 1 cut(s) | 372 |
| BspHI | TCATGA | 1 cut(s) | 259 |
| BspLI | GGNNCC | 4 cut(s) | 389, 488, 622, 703 |
| BspPI | GGATC | 1 cut(s) | 14 |
| BspT107I | GGYRCC | 2 cut(s) | 620, 701 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrBI | CCGCTC | 2 cut(s) | 25, 818 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 3 cut(s) | 644, 675, 706 |
| BssMI | GATC | 2 cut(s) | 19, 228 |
| BssNI | GRCGYC | 1 cut(s) | 702 |
| BssT1I | CCWWGG | 2 cut(s) | 675, 706 |
| Bst2UI | CCWGG | 1 cut(s) | 645 |
| Bst6I | CTCTTC | 2 cut(s) | 219, 487 |
| BstACI | GRCGYC | 1 cut(s) | 702 |
| BstC8I | GCNNGC | 2 cut(s) | 652, 816 |
| BstDEI | CTNAG | 5 cut(s) | 181, 410, 558, 755, 822 |
| BstDSI | CCRYGG | 1 cut(s) | 675 |
| BstF5I | GGATG | 2 cut(s) | 22, 303 |
| BstFNI | CGCG | 1 cut(s) | 372 |
| BstH2I | RGCGCY | 3 cut(s) | 549, 590, 705 |
| BstHHI | GCGC | 4 cut(s) | 374, 548, 589, 704 |
| BstKTI | GATC | 2 cut(s) | 22, 231 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 2 cut(s) | 19, 228 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 394, 790 |
| BstNI | CCWGG | 1 cut(s) | 645 |
| BstSCI | CCNGG | 1 cut(s) | 643 |
| BstUI | CGCG | 1 cut(s) | 372 |
| BstV1I | GCAGC | 1 cut(s) | 703 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 644 |
| BsuRI | GGCC | 2 cut(s) | 534, 760 |
| BtgI | CCRYGG | 1 cut(s) | 675 |
| BtsCI | GGATG | 2 cut(s) | 22, 303 |
| Cac8I | GCNNGC | 2 cut(s) | 652, 816 |
| CciI | TCATGA | 1 cut(s) | 259 |
| CfoI | GCGC | 4 cut(s) | 374, 548, 589, 704 |
| Cfr13I | GGNCC | 2 cut(s) | 434, 759 |
| CseI | GACGC | 2 cut(s) | 673, 760 |
| CviAII | CATG | 6 cut(s) | 260, 296, 536, 668, 676, 692 |
| DdeI | CTNAG | 5 cut(s) | 181, 410, 558, 755, 822 |
| DinI | GGCGCC | 1 cut(s) | 703 |
| DpnI | GATC | 2 cut(s) | 21, 230 |
| DpnII | GATC | 2 cut(s) | 19, 228 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 432 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 432 |
| EaeI | YGGCCR | 1 cut(s) | 532 |
| Eam1104I | CTCTTC | 2 cut(s) | 219, 487 |
| EarI | CTCTTC | 2 cut(s) | 219, 487 |
| Ecl136II | GAGCTC | 1 cut(s) | 265 |
| Eco130I | CCWWGG | 2 cut(s) | 675, 706 |
| Eco24I | GRGCYC | 1 cut(s) | 267 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 434 |
| Eco53kI | GAGCTC | 1 cut(s) | 265 |
| EcoICRI | GAGCTC | 1 cut(s) | 265 |
| EcoRII | CCWGG | 1 cut(s) | 643 |
| EcoT14I | CCWWGG | 2 cut(s) | 675, 706 |
| EcoT38I | GRGCYC | 1 cut(s) | 267 |
| EgeI | GGCGCC | 1 cut(s) | 703 |
| EheI | GGCGCC | 1 cut(s) | 703 |
| ErhI | CCWWGG | 2 cut(s) | 675, 706 |
| FaeI | CATG | 6 cut(s) | 263, 299, 539, 671, 679, 695 |
| FatI | CATG | 6 cut(s) | 259, 295, 535, 667, 675, 691 |
| FauI | CCCGC | 1 cut(s) | 823 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 717 |
| FokI | GGATG | 2 cut(s) | 29, 290 |
| FriOI | GRGCYC | 1 cut(s) | 267 |
| Fsp4HI | GCNGC | 1 cut(s) | 717 |
| FspBI | CTAG | 3 cut(s) | 57, 122, 707 |
| GlaI | GCGC | 4 cut(s) | 373, 547, 588, 703 |
| GluI | GCNGC | 1 cut(s) | 717 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 3 cut(s) | 549, 590, 705 |
| HaeIII | GGCC | 2 cut(s) | 534, 760 |
| HapII | CCGG | 1 cut(s) | 353 |
| HgaI | GACGC | 2 cut(s) | 673, 760 |
| HhaI | GCGC | 4 cut(s) | 374, 548, 589, 704 |
| Hin1I | GRCGYC | 1 cut(s) | 702 |
| Hin1II | CATG | 6 cut(s) | 263, 299, 539, 671, 679, 695 |
| Hin6I | GCGC | 4 cut(s) | 372, 546, 587, 702 |
| HinP1I | GCGC | 4 cut(s) | 372, 546, 587, 702 |
| HincII | GTYRAC | 1 cut(s) | 500 |
| HindII | GTYRAC | 1 cut(s) | 500 |
| HinfI | GANTC | 3 cut(s) | 4, 246, 356 |
| HpaII | CCGG | 1 cut(s) | 353 |
| HphI | GGTGA | 5 cut(s) | 233, 458, 707, 715, 722 |
| Hpy166II | GTNNAC | 2 cut(s) | 500, 634 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 750 |
| Hpy188III | TCNNGA | 5 cut(s) | 116, 170, 260, 327, 353 |
| Hpy8I | GTNNAC | 2 cut(s) | 500, 634 |
| HpyAV | CCTTC | 3 cut(s) | 54, 378, 452 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 502 |
| HpyCH4V | TGCA | 1 cut(s) | 719 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 394, 790 |
| HpyF3I | CTNAG | 5 cut(s) | 181, 410, 558, 755, 822 |
| HpySE526I | ACGT | 2 cut(s) | 96, 502 |
| Hsp92I | GRCGYC | 1 cut(s) | 702 |
| Hsp92II | CATG | 6 cut(s) | 263, 299, 539, 671, 679, 695 |
| HspAI | GCGC | 4 cut(s) | 372, 546, 587, 702 |
| KasI | GGCGCC | 1 cut(s) | 701 |
| Kpn2I | TCCGGA | 1 cut(s) | 352 |
| Kzo9I | GATC | 2 cut(s) | 19, 228 |
| LmnI | GCTCC | 3 cut(s) | 30, 393, 823 |
| LpnPI | CCDG | 9 cut(s) | 41, 129, 366, 516, 630, 636, 653, 657, 742 |
| Lsp1109I | GCAGC | 1 cut(s) | 703 |
| LweI | GCATC | 1 cut(s) | 703 |
| MaeI | CTAG | 3 cut(s) | 57, 122, 707 |
| MaeII | ACGT | 2 cut(s) | 96, 502 |
| MalI | GATC | 2 cut(s) | 21, 230 |
| MbiI | CCGCTC | 2 cut(s) | 25, 818 |
| MboI | GATC | 2 cut(s) | 19, 228 |
| MboII | GAAGA | 5 cut(s) | 59, 62, 236, 325, 504 |
| MhlI | GDGCHC | 1 cut(s) | 267 |
| MlsI | TGGCCA | 1 cut(s) | 534 |
| MluCI | AATT | 5 cut(s) | 200, 212, 322, 361, 769 |
| MluNI | TGGCCA | 1 cut(s) | 534 |
| Mly113I | GGCGCC | 1 cut(s) | 702 |
| MnlI | CCTC | 8 cut(s) | 152, 488, 508, 512, 538, 600, 637, 804 |
| Mox20I | TGGCCA | 1 cut(s) | 534 |
| MroI | TCCGGA | 1 cut(s) | 352 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 534 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 5 cut(s) | 15, 308, 570, 693, 696 |
| Msp20I | TGGCCA | 1 cut(s) | 534 |
| MspI | CCGG | 1 cut(s) | 353 |
| MspR9I | CCNGG | 1 cut(s) | 645 |
| MvaI | CCWGG | 1 cut(s) | 645 |
| MvnI | CGCG | 1 cut(s) | 372 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 394, 790 |
| NarI | GGCGCC | 1 cut(s) | 702 |
| NcoI | CCATGG | 1 cut(s) | 675 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 19, 228 |
| NlaIII | CATG | 6 cut(s) | 263, 299, 539, 671, 679, 695 |
| NlaIV | GGNNCC | 4 cut(s) | 389, 488, 622, 703 |
| PagI | TCATGA | 1 cut(s) | 259 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 2 cut(s) | 246, 356 |
| PkrI | GCNGC | 1 cut(s) | 718 |
| PluTI | GGCGCC | 1 cut(s) | 705 |
| Psp124BI | GAGCTC | 1 cut(s) | 267 |
| Psp6I | CCWGG | 1 cut(s) | 643 |
| PspGI | CCWGG | 1 cut(s) | 643 |
| PspN4I | GGNNCC | 4 cut(s) | 389, 488, 622, 703 |
| PspPI | GGNCC | 2 cut(s) | 434, 759 |
| RseI | CAYNNNNRTG | 5 cut(s) | 15, 308, 570, 693, 696 |
| SacI | GAGCTC | 1 cut(s) | 267 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| SatI | GCNGC | 1 cut(s) | 717 |
| Sau3AI | GATC | 2 cut(s) | 19, 228 |
| Sau96I | GGNCC | 2 cut(s) | 434, 759 |
| ScrFI | CCNGG | 1 cut(s) | 645 |
| SduI | GDGCHC | 1 cut(s) | 267 |
| SetI | ASST | 8 cut(s) | 99, 123, 257, 267, 463, 499, 505, 712 |
| SfaNI | GCATC | 1 cut(s) | 703 |
| SfoI | GGCGCC | 1 cut(s) | 703 |
| SinI | GGWCC | 1 cut(s) | 434 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 15, 308, 570, 693, 696 |
| Sse9I | AATT | 5 cut(s) | 200, 212, 322, 361, 769 |
| SsiI | CCGC | 4 cut(s) | 23, 145, 624, 816 |
| SspDI | GGCGCC | 1 cut(s) | 701 |
| SspMI | CTAG | 3 cut(s) | 57, 122, 707 |
| SstI | GAGCTC | 1 cut(s) | 267 |
| StyD4I | CCNGG | 1 cut(s) | 643 |
| StyI | CCWWGG | 2 cut(s) | 675, 706 |
| TaiI | ACGT | 2 cut(s) | 99, 505 |
| TaqI | TCGA | 2 cut(s) | 78, 326 |
| TasI | AATT | 5 cut(s) | 200, 212, 322, 361, 769 |
| TfiI | GAWTC | 2 cut(s) | 246, 356 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseI | GCWGC | 1 cut(s) | 716 |
| TspDTI | ATGAA | 5 cut(s) | 56, 60, 96, 248, 293 |
| TspGWI | ACGGA | 2 cut(s) | 499, 619 |
| VpaK11BI | GGWCC | 1 cut(s) | 434 |
| XapI | RAATTY | 2 cut(s) | 200, 769 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 641, 647, 695 |
| XmaJI | CCTAGG | 1 cut(s) | 706 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 57, 122, 707 |