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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 81 |
| AccB1I | GGYRCC | 2 cut(s) | 254, 275 |
| AccBSI | CCGCTC | 1 cut(s) | 167 |
| AccII | CGCG | 1 cut(s) | 121 |
| AciI | CCGC | 4 cut(s) | 154, 167, 249, 252 |
| AclWI | GGATC | 1 cut(s) | 373 |
| AcvI | CACGTG | 2 cut(s) | 176, 194 |
| AcyI | GRCGYC | 2 cut(s) | 255, 276 |
| AdeI | CACNNNGTG | 2 cut(s) | 179, 314 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 47, 195, 224 |
| AflIII | ACRYGT | 2 cut(s) | 173, 191 |
| AgsI | TTSAA | 1 cut(s) | 385 |
| AluBI | AGCT | 2 cut(s) | 242, 413 |
| AluI | AGCT | 2 cut(s) | 242, 413 |
| Alw21I | GWGCWC | 1 cut(s) | 319 |
| Alw44I | GTGCAC | 1 cut(s) | 315 |
| AlwI | GGATC | 1 cut(s) | 373 |
| Ama87I | CYCGRG | 1 cut(s) | 18 |
| AoxI | GGCC | 2 cut(s) | 15, 53 |
| ApaLI | GTGCAC | 1 cut(s) | 315 |
| ApeKI | GCWGC | 5 cut(s) | 89, 92, 95, 108, 413 |
| AspA2I | CCTAGG | 1 cut(s) | 287 |
| AspLEI | GCGC | 3 cut(s) | 123, 257, 278 |
| AspS9I | GGNCC | 3 cut(s) | 10, 16, 54 |
| AsuC2I | CCSGG | 1 cut(s) | 14 |
| AvaI | CYCGRG | 1 cut(s) | 18 |
| AvaII | GGWCC | 1 cut(s) | 10 |
| AvrII | CCTAGG | 1 cut(s) | 287 |
| BaeGI | GKGCMC | 1 cut(s) | 319 |
| BanI | GGYRCC | 2 cut(s) | 254, 275 |
| BauI | CACGAG | 1 cut(s) | 243 |
| BbrPI | CACGTG | 2 cut(s) | 176, 194 |
| Bbv12I | GWGCWC | 1 cut(s) | 319 |
| BbvI | GCAGC | 5 cut(s) | 76, 79, 82, 95, 400 |
| BccI | CCATC | 1 cut(s) | 151 |
| BceAI | ACGGC | 2 cut(s) | 68, 207 |
| BciVI | GTATCC | 1 cut(s) | 163 |
| BcnI | CCSGG | 1 cut(s) | 14 |
| BfaI | CTAG | 3 cut(s) | 219, 288, 410 |
| BfoI | RGCGCY | 2 cut(s) | 258, 279 |
| BfuAI | ACCTGC | 1 cut(s) | 81 |
| BfuI | GTATCC | 1 cut(s) | 163 |
| BisI | GCNGC | 7 cut(s) | 90, 93, 96, 109, 250, 253, 414 |
| BlnI | CCTAGG | 1 cut(s) | 287 |
| BlsI | GCNGC | 7 cut(s) | 91, 94, 97, 110, 251, 254, 415 |
| Bme1390I | CCNGG | 1 cut(s) | 14 |
| Bme18I | GGWCC | 1 cut(s) | 10 |
| BmeT110I | CYCGRG | 1 cut(s) | 18 |
| BmgT120I | GGNCC | 3 cut(s) | 10, 16, 54 |
| BmiI | GGNNCC | 5 cut(s) | 11, 12, 235, 256, 277 |
| BmrFI | CCNGG | 1 cut(s) | 14 |
| BpuEI | CTTGAG | 1 cut(s) | 115 |
| BpuMI | CCSGG | 1 cut(s) | 14 |
| Bsa29I | ATCGAT | 1 cut(s) | 358 |
| BsaAI | YACGTR | 2 cut(s) | 176, 194 |
| BsaBI | GATNNNNATC | 1 cut(s) | 364 |
| BsaHI | GRCGYC | 2 cut(s) | 255, 276 |
| BsaJI | CCNNGG | 3 cut(s) | 223, 258, 287 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 190, 220 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 47, 195, 224 |
| Bse3DI | GCAATG | 2 cut(s) | 190, 395 |
| Bse8I | GATNNNNATC | 1 cut(s) | 364 |
| BseCI | ATCGAT | 1 cut(s) | 358 |
| BseDI | CCNNGG | 3 cut(s) | 223, 258, 287 |
| BseJI | GATNNNNATC | 1 cut(s) | 364 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 47, 195, 224 |
| BseMI | GCAATG | 2 cut(s) | 190, 395 |
| BseSI | GKGCMC | 1 cut(s) | 319 |
| BseXI | GCAGC | 5 cut(s) | 76, 79, 82, 95, 400 |
| Bsh1236I | CGCG | 1 cut(s) | 121 |
| BshFI | GGCC | 2 cut(s) | 17, 55 |
| BshNI | GGYRCC | 2 cut(s) | 254, 275 |
| BshVI | ATCGAT | 1 cut(s) | 358 |
| BsiHKAI | GWGCWC | 1 cut(s) | 319 |
| BsiHKCI | CYCGRG | 1 cut(s) | 18 |
| BsiSI | CCGG | 1 cut(s) | 14 |
| BslFI | GGGAC | 1 cut(s) | 23 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 47, 195, 224 |
| BsmFI | GGGAC | 1 cut(s) | 23 |
| BsnI | GGCC | 2 cut(s) | 17, 55 |
| BsoBI | CYCGRG | 1 cut(s) | 18 |
| Bsp1286I | GDGCHC | 1 cut(s) | 319 |
| Bsp143I | GATC | 1 cut(s) | 365 |
| Bsp19I | CCATGG | 1 cut(s) | 258 |
| BspACI | CCGC | 4 cut(s) | 154, 167, 249, 252 |
| BspANI | GGCC | 2 cut(s) | 17, 55 |
| BspDI | ATCGAT | 1 cut(s) | 358 |
| BspFNI | CGCG | 1 cut(s) | 121 |
| BspLI | GGNNCC | 5 cut(s) | 11, 12, 235, 256, 277 |
| BspMI | ACCTGC | 1 cut(s) | 81 |
| BspPI | GGATC | 1 cut(s) | 373 |
| BspT107I | GGYRCC | 2 cut(s) | 254, 275 |
| BsrBI | CCGCTC | 1 cut(s) | 167 |
| BsrDI | GCAATG | 2 cut(s) | 190, 395 |
| BssECI | CCNNGG | 3 cut(s) | 223, 258, 287 |
| BssMI | GATC | 1 cut(s) | 365 |
| BssNI | GRCGYC | 2 cut(s) | 255, 276 |
| BssSI | CACGAG | 1 cut(s) | 243 |
| BssT1I | CCWWGG | 2 cut(s) | 258, 287 |
| Bst2BI | CACGAG | 1 cut(s) | 243 |
| BstACI | GRCGYC | 2 cut(s) | 255, 276 |
| BstBAI | YACGTR | 2 cut(s) | 176, 194 |
| BstC8I | GCNNGC | 2 cut(s) | 400, 404 |
| BstDSI | CCRYGG | 2 cut(s) | 223, 258 |
| BstFNI | CGCG | 1 cut(s) | 121 |
| BstH2I | RGCGCY | 2 cut(s) | 258, 279 |
| BstHHI | GCGC | 3 cut(s) | 123, 257, 278 |
| BstKTI | GATC | 1 cut(s) | 368 |
| BstMBI | GATC | 1 cut(s) | 365 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 95, 219, 303, 399 |
| BstSCI | CCNGG | 1 cut(s) | 12 |
| BstSLI | GKGCMC | 1 cut(s) | 319 |
| BstUI | CGCG | 1 cut(s) | 121 |
| BstV1I | GCAGC | 5 cut(s) | 76, 79, 82, 95, 400 |
| Bsu15I | ATCGAT | 1 cut(s) | 358 |
| BsuI | GTATCC | 1 cut(s) | 163 |
| BsuRI | GGCC | 2 cut(s) | 17, 55 |
| BsuTUI | ATCGAT | 1 cut(s) | 358 |
| BtgI | CCRYGG | 2 cut(s) | 223, 258 |
| BveI | ACCTGC | 1 cut(s) | 81 |
| Cac8I | GCNNGC | 2 cut(s) | 400, 404 |
| CfoI | GCGC | 3 cut(s) | 123, 257, 278 |
| Cfr13I | GGNCC | 3 cut(s) | 10, 16, 54 |
| ClaI | ATCGAT | 1 cut(s) | 358 |
| CviAII | CATG | 2 cut(s) | 259, 438 |
| CviJI | RGCY | 7 cut(s) | 17, 55, 135, 222, 236, 242, 413 |
| CviKI_1 | RGCY | 7 cut(s) | 17, 55, 135, 222, 236, 242, 413 |
| DinI | GGCGCC | 2 cut(s) | 256, 277 |
| DpnI | GATC | 1 cut(s) | 367 |
| DpnII | GATC | 1 cut(s) | 365 |
| DraIII | CACNNNGTG | 2 cut(s) | 179, 314 |
| Eco130I | CCWWGG | 2 cut(s) | 258, 287 |
| Eco47I | GGWCC | 1 cut(s) | 10 |
| Eco72I | CACGTG | 2 cut(s) | 176, 194 |
| Eco88I | CYCGRG | 1 cut(s) | 18 |
| EcoO109I | RGGNCCY | 1 cut(s) | 10 |
| EcoT14I | CCWWGG | 2 cut(s) | 258, 287 |
| EgeI | GGCGCC | 2 cut(s) | 256, 277 |
| EheI | GGCGCC | 2 cut(s) | 256, 277 |
| ErhI | CCWWGG | 2 cut(s) | 258, 287 |
| FaeI | CATG | 2 cut(s) | 262, 441 |
| FaiI | YATR | 6 cut(s) | 239, 260, 350, 429, 431, 439 |
| FaqI | GGGAC | 1 cut(s) | 23 |
| FatI | CATG | 2 cut(s) | 258, 437 |
| Fnu4HI | GCNGC | 7 cut(s) | 90, 93, 96, 109, 250, 253, 414 |
| Fsp4HI | GCNGC | 7 cut(s) | 90, 93, 96, 109, 250, 253, 414 |
| FspBI | CTAG | 3 cut(s) | 219, 288, 410 |
| GlaI | GCGC | 3 cut(s) | 122, 256, 277 |
| GluI | GCNGC | 7 cut(s) | 90, 93, 96, 109, 250, 253, 414 |
| HaeII | RGCGCY | 2 cut(s) | 258, 279 |
| HaeIII | GGCC | 2 cut(s) | 17, 55 |
| HapII | CCGG | 1 cut(s) | 14 |
| HhaI | GCGC | 3 cut(s) | 123, 257, 278 |
| Hin1I | GRCGYC | 2 cut(s) | 255, 276 |
| Hin1II | CATG | 2 cut(s) | 262, 441 |
| Hin6I | GCGC | 3 cut(s) | 121, 255, 276 |
| HinP1I | GCGC | 3 cut(s) | 121, 255, 276 |
| HpaII | CCGG | 1 cut(s) | 14 |
| Hpy166II | GTNNAC | 1 cut(s) | 317 |
| Hpy188III | TCNNGA | 1 cut(s) | 147 |
| Hpy8I | GTNNAC | 1 cut(s) | 317 |
| HpyCH4IV | ACGT | 3 cut(s) | 175, 193, 313 |
| HpyCH4V | TGCA | 3 cut(s) | 317, 393, 416 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 95, 219, 303, 399 |
| HpySE526I | ACGT | 3 cut(s) | 175, 193, 313 |
| Hsp92I | GRCGYC | 2 cut(s) | 255, 276 |
| Hsp92II | CATG | 2 cut(s) | 262, 441 |
| HspAI | GCGC | 3 cut(s) | 121, 255, 276 |
| KasI | GGCGCC | 2 cut(s) | 254, 275 |
| KflI | GGGWCCC | 1 cut(s) | 10 |
| Kzo9I | GATC | 1 cut(s) | 365 |
| LmnI | GCTCC | 3 cut(s) | 116, 164, 233 |
| LpnPI | CCDG | 4 cut(s) | 27, 86, 150, 409 |
| Lsp1109I | GCAGC | 5 cut(s) | 76, 79, 82, 95, 400 |
| MaeI | CTAG | 3 cut(s) | 219, 288, 410 |
| MaeII | ACGT | 3 cut(s) | 175, 193, 313 |
| MalI | GATC | 1 cut(s) | 367 |
| MbiI | CCGCTC | 1 cut(s) | 167 |
| MboI | GATC | 1 cut(s) | 365 |
| MhlI | GDGCHC | 1 cut(s) | 319 |
| Mly113I | GGCGCC | 2 cut(s) | 255, 276 |
| MmeI | TCCRAC | 1 cut(s) | 138 |
| MnlI | CCTC | 5 cut(s) | 194, 266, 294, 326, 330 |
| MslI | CAYNNNNRTG | 1 cut(s) | 360 |
| MspI | CCGG | 1 cut(s) | 14 |
| MspR9I | CCNGG | 1 cut(s) | 14 |
| MvnI | CGCG | 1 cut(s) | 121 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 95, 219, 303, 399 |
| NarI | GGCGCC | 2 cut(s) | 255, 276 |
| NciI | CCSGG | 1 cut(s) | 14 |
| NcoI | CCATGG | 1 cut(s) | 258 |
| NdeII | GATC | 1 cut(s) | 365 |
| NlaIII | CATG | 2 cut(s) | 262, 441 |
| NlaIV | GGNNCC | 5 cut(s) | 11, 12, 235, 256, 277 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 54, 310 |
| PkrI | GCNGC | 7 cut(s) | 91, 94, 97, 110, 251, 254, 415 |
| PluTI | GGCGCC | 2 cut(s) | 258, 279 |
| PmaCI | CACGTG | 2 cut(s) | 176, 194 |
| PmlI | CACGTG | 2 cut(s) | 176, 194 |
| Ppu21I | YACGTR | 2 cut(s) | 176, 194 |
| PpuMI | RGGWCCY | 1 cut(s) | 10 |
| Psp5II | RGGWCCY | 1 cut(s) | 10 |
| PspCI | CACGTG | 2 cut(s) | 176, 194 |
| PspN4I | GGNNCC | 5 cut(s) | 11, 12, 235, 256, 277 |
| PspPI | GGNCC | 3 cut(s) | 10, 16, 54 |
| PspPPI | RGGWCCY | 1 cut(s) | 10 |
| RseI | CAYNNNNRTG | 1 cut(s) | 360 |
| SatI | GCNGC | 7 cut(s) | 90, 93, 96, 109, 250, 253, 414 |
| Sau3AI | GATC | 1 cut(s) | 365 |
| Sau96I | GGNCC | 3 cut(s) | 10, 16, 54 |
| ScrFI | CCNGG | 1 cut(s) | 14 |
| SduI | GDGCHC | 1 cut(s) | 319 |
| SetI | ASST | 7 cut(s) | 75, 178, 196, 244, 316, 322, 415 |
| SfoI | GGCGCC | 2 cut(s) | 256, 277 |
| SinI | GGWCC | 1 cut(s) | 10 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 360 |
| SmlI | CTYRAG | 1 cut(s) | 130 |
| SmoI | CTYRAG | 1 cut(s) | 130 |
| SsiI | CCGC | 4 cut(s) | 154, 167, 249, 252 |
| SspDI | GGCGCC | 2 cut(s) | 254, 275 |
| SspMI | CTAG | 3 cut(s) | 219, 288, 410 |
| StyD4I | CCNGG | 1 cut(s) | 12 |
| StyI | CCWWGG | 2 cut(s) | 258, 287 |
| TaiI | ACGT | 3 cut(s) | 178, 196, 316 |
| TaqI | TCGA | 1 cut(s) | 358 |
| TauI | GCSGC | 2 cut(s) | 252, 255 |
| TseI | GCWGC | 5 cut(s) | 89, 92, 95, 108, 413 |
| TspGWI | ACGGA | 1 cut(s) | 63 |
| VneI | GTGCAC | 1 cut(s) | 315 |
| VpaK11BI | GGWCC | 1 cut(s) | 10 |
| XmaJI | CCTAGG | 1 cut(s) | 287 |
| XspI | CTAG | 3 cut(s) | 219, 288, 410 |