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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 528, 573 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 636 |
| Acc36I | ACCTGC | 1 cut(s) | 663 |
| AccB1I | GGYRCC | 3 cut(s) | 749, 770, 791 |
| AccBSI | CCGCTC | 1 cut(s) | 601 |
| AciI | CCGC | 3 cut(s) | 430, 601, 747 |
| AclWI | GGATC | 2 cut(s) | 141, 461 |
| AcuI | CTGAAG | 1 cut(s) | 456 |
| AcvI | CACGTG | 2 cut(s) | 692, 710 |
| AcyI | GRCGYC | 2 cut(s) | 750, 771 |
| AdeI | CACNNNGTG | 2 cut(s) | 695, 821 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 336, 587, 588, 658, 711, 740, 805 |
| AflIII | ACRYGT | 2 cut(s) | 689, 707 |
| AgsI | TTSAA | 5 cut(s) | 96, 257, 286, 309, 534 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 353 |
| AjnI | CCWGG | 2 cut(s) | 29, 733 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 4 cut(s) | 314, 370, 472, 494 |
| AluI | AGCT | 4 cut(s) | 314, 370, 472, 494 |
| Alw21I | GWGCWC | 2 cut(s) | 316, 826 |
| Alw44I | GTGCAC | 1 cut(s) | 822 |
| AlwI | GGATC | 2 cut(s) | 141, 461 |
| ApaLI | GTGCAC | 1 cut(s) | 822 |
| AspA2I | CCTAGG | 1 cut(s) | 803 |
| AspLEI | GCGC | 4 cut(s) | 273, 594, 752, 773 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AvrII | CCTAGG | 1 cut(s) | 803 |
| BaeGI | GKGCMC | 1 cut(s) | 826 |
| BanI | GGYRCC | 3 cut(s) | 749, 770, 791 |
| BanII | GRGCYC | 1 cut(s) | 316 |
| BbrPI | CACGTG | 2 cut(s) | 692, 710 |
| Bbv12I | GWGCWC | 2 cut(s) | 316, 826 |
| BciT130I | CCWGG | 2 cut(s) | 31, 735 |
| BciVI | GTATCC | 2 cut(s) | 679, 740 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 3 cut(s) | 15, 447, 804 |
| BfmI | CTRYAG | 3 cut(s) | 323, 489, 670 |
| BfoI | RGCGCY | 2 cut(s) | 753, 774 |
| BfuAI | ACCTGC | 1 cut(s) | 663 |
| BfuI | GTATCC | 2 cut(s) | 679, 740 |
| BisI | GCNGC | 1 cut(s) | 748 |
| BlnI | CCTAGG | 1 cut(s) | 803 |
| BlsI | GCNGC | 1 cut(s) | 749 |
| Bme1390I | CCNGG | 3 cut(s) | 31, 131, 735 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 353 |
| BmiI | GGNNCC | 4 cut(s) | 605, 751, 772, 793 |
| BmrFI | CCNGG | 3 cut(s) | 31, 131, 735 |
| BmsI | GCATC | 2 cut(s) | 174, 226 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaAI | YACGTR | 2 cut(s) | 692, 710 |
| BsaHI | GRCGYC | 2 cut(s) | 750, 771 |
| BsaJI | CCNNGG | 5 cut(s) | 29, 733, 753, 774, 803 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 706, 736, 784, 814 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 336, 587, 588, 658, 711, 740, 805 |
| Bse3DI | GCAATG | 1 cut(s) | 706 |
| BseBI | CCWGG | 2 cut(s) | 31, 735 |
| BseDI | CCNNGG | 5 cut(s) | 29, 733, 753, 774, 803 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 336, 587, 588, 658, 711, 740, 805 |
| BseMI | GCAATG | 1 cut(s) | 706 |
| BseMII | CTCAG | 2 cut(s) | 223, 486 |
| BseSI | GKGCMC | 1 cut(s) | 826 |
| BshNI | GGYRCC | 3 cut(s) | 749, 770, 791 |
| BsiHKAI | GWGCWC | 2 cut(s) | 316, 826 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 642 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 336, 587, 588, 658, 711, 740, 805 |
| BsmFI | GGGAC | 1 cut(s) | 642 |
| Bsp1286I | GDGCHC | 2 cut(s) | 316, 826 |
| Bsp143I | GATC | 3 cut(s) | 133, 228, 453 |
| Bsp19I | CCATGG | 2 cut(s) | 753, 774 |
| BspACI | CCGC | 3 cut(s) | 430, 601, 747 |
| BspCNI | CTCAG | 2 cut(s) | 222, 487 |
| BspHI | TCATGA | 3 cut(s) | 456, 516, 559 |
| BspLI | GGNNCC | 4 cut(s) | 605, 751, 772, 793 |
| BspMAI | CTGCAG | 1 cut(s) | 674 |
| BspMI | ACCTGC | 1 cut(s) | 663 |
| BspPI | GGATC | 2 cut(s) | 141, 461 |
| BspQI | GCTCTTC | 1 cut(s) | 321 |
| BspT107I | GGYRCC | 3 cut(s) | 749, 770, 791 |
| BsrBI | CCGCTC | 1 cut(s) | 601 |
| BsrDI | GCAATG | 1 cut(s) | 706 |
| BssECI | CCNNGG | 5 cut(s) | 29, 733, 753, 774, 803 |
| BssMI | GATC | 3 cut(s) | 133, 228, 453 |
| BssNI | GRCGYC | 2 cut(s) | 750, 771 |
| BssT1I | CCWWGG | 3 cut(s) | 753, 774, 803 |
| Bst2UI | CCWGG | 2 cut(s) | 31, 735 |
| Bst4CI | ACNGT | 1 cut(s) | 327 |
| Bst6I | CTCTTC | 1 cut(s) | 321 |
| BstACI | GRCGYC | 2 cut(s) | 750, 771 |
| BstBAI | YACGTR | 2 cut(s) | 692, 710 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 3 cut(s) | 209, 495, 828 |
| BstDSI | CCRYGG | 2 cut(s) | 753, 774 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstH2I | RGCGCY | 2 cut(s) | 753, 774 |
| BstHHI | GCGC | 4 cut(s) | 273, 594, 752, 773 |
| BstKTI | GATC | 3 cut(s) | 136, 231, 456 |
| BstMBI | GATC | 3 cut(s) | 133, 228, 453 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 598 |
| BstNI | CCWGG | 2 cut(s) | 31, 735 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 3 cut(s) | 29, 129, 733 |
| BstSFI | CTRYAG | 3 cut(s) | 323, 489, 670 |
| BstSLI | GKGCMC | 1 cut(s) | 826 |
| BsuI | GTATCC | 2 cut(s) | 679, 740 |
| BtgI | CCRYGG | 2 cut(s) | 753, 774 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| BtsIMutI | CAGTG | 1 cut(s) | 432 |
| BveI | ACCTGC | 1 cut(s) | 663 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CciI | TCATGA | 3 cut(s) | 456, 516, 559 |
| CfoI | GCGC | 4 cut(s) | 273, 594, 752, 773 |
| CviAII | CATG | 8 cut(s) | 119, 164, 331, 457, 517, 560, 754, 775 |
| CviJI | RGCY | 8 cut(s) | 34, 48, 314, 370, 407, 472, 494, 651 |
| CviKI_1 | RGCY | 8 cut(s) | 34, 48, 314, 370, 407, 472, 494, 651 |
| DdeI | CTNAG | 3 cut(s) | 209, 495, 828 |
| DinI | GGCGCC | 2 cut(s) | 751, 772 |
| DpnI | GATC | 3 cut(s) | 135, 230, 455 |
| DpnII | GATC | 3 cut(s) | 133, 228, 453 |
| DraIII | CACNNNGTG | 2 cut(s) | 695, 821 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 636 |
| DriI | GACNNNNNGTC | 1 cut(s) | 353 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 636 |
| Eam1104I | CTCTTC | 1 cut(s) | 321 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 353 |
| EarI | CTCTTC | 1 cut(s) | 321 |
| Ecl136II | GAGCTC | 1 cut(s) | 314 |
| Eco130I | CCWWGG | 3 cut(s) | 753, 774, 803 |
| Eco24I | GRGCYC | 1 cut(s) | 316 |
| Eco53kI | GAGCTC | 1 cut(s) | 314 |
| Eco57I | CTGAAG | 1 cut(s) | 456 |
| Eco72I | CACGTG | 2 cut(s) | 692, 710 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoICRI | GAGCTC | 1 cut(s) | 314 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 29, 733 |
| EcoT14I | CCWWGG | 3 cut(s) | 753, 774, 803 |
| EcoT38I | GRGCYC | 1 cut(s) | 316 |
| EgeI | GGCGCC | 2 cut(s) | 751, 772 |
| EheI | GGCGCC | 2 cut(s) | 751, 772 |
| ErhI | CCWWGG | 3 cut(s) | 753, 774, 803 |
| FaeI | CATG | 8 cut(s) | 122, 167, 334, 460, 520, 563, 757, 778 |
| FaqI | GGGAC | 1 cut(s) | 642 |
| FatI | CATG | 8 cut(s) | 118, 163, 330, 456, 516, 559, 753, 774 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 748 |
| FokI | GGATG | 1 cut(s) | 248 |
| FriOI | GRGCYC | 1 cut(s) | 316 |
| Fsp4HI | GCNGC | 1 cut(s) | 748 |
| FspBI | CTAG | 3 cut(s) | 15, 447, 804 |
| GlaI | GCGC | 4 cut(s) | 272, 593, 751, 772 |
| GluI | GCNGC | 1 cut(s) | 748 |
| HaeII | RGCGCY | 2 cut(s) | 753, 774 |
| HapII | CCGG | 1 cut(s) | 131 |
| HhaI | GCGC | 4 cut(s) | 273, 594, 752, 773 |
| Hin1I | GRCGYC | 2 cut(s) | 750, 771 |
| Hin1II | CATG | 8 cut(s) | 122, 167, 334, 460, 520, 563, 757, 778 |
| Hin6I | GCGC | 4 cut(s) | 271, 592, 750, 771 |
| HinP1I | GCGC | 4 cut(s) | 271, 592, 750, 771 |
| HinfI | GANTC | 2 cut(s) | 18, 38 |
| HpaII | CCGG | 1 cut(s) | 131 |
| Hpy166II | GTNNAC | 2 cut(s) | 347, 824 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 212 |
| Hpy188III | TCNNGA | 5 cut(s) | 181, 309, 457, 517, 560 |
| Hpy8I | GTNNAC | 2 cut(s) | 347, 824 |
| HpyAV | CCTTC | 1 cut(s) | 403 |
| HpyCH4III | ACNGT | 1 cut(s) | 327 |
| HpyCH4IV | ACGT | 4 cut(s) | 631, 691, 709, 820 |
| HpyCH4V | TGCA | 6 cut(s) | 122, 148, 239, 578, 672, 824 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 598 |
| HpyF3I | CTNAG | 3 cut(s) | 209, 495, 828 |
| HpySE526I | ACGT | 4 cut(s) | 631, 691, 709, 820 |
| Hsp92I | GRCGYC | 2 cut(s) | 750, 771 |
| Hsp92II | CATG | 8 cut(s) | 122, 167, 334, 460, 520, 563, 757, 778 |
| HspAI | GCGC | 4 cut(s) | 271, 592, 750, 771 |
| KasI | GGCGCC | 2 cut(s) | 749, 770 |
| Kzo9I | GATC | 3 cut(s) | 133, 228, 453 |
| LguI | GCTCTTC | 1 cut(s) | 321 |
| LmnI | GCTCC | 1 cut(s) | 598 |
| LpnPI | CCDG | 7 cut(s) | 16, 43, 144, 158, 658, 720, 747 |
| LweI | GCATC | 2 cut(s) | 174, 226 |
| MaeI | CTAG | 3 cut(s) | 15, 447, 804 |
| MaeII | ACGT | 4 cut(s) | 631, 691, 709, 820 |
| MaeIII | GTNAC | 2 cut(s) | 67, 355 |
| MalI | GATC | 3 cut(s) | 135, 230, 455 |
| MbiI | CCGCTC | 1 cut(s) | 601 |
| MboI | GATC | 3 cut(s) | 133, 228, 453 |
| MboII | GAAGA | 1 cut(s) | 308 |
| MhlI | GDGCHC | 2 cut(s) | 316, 826 |
| MluCI | AATT | 6 cut(s) | 174, 304, 372, 523, 529, 568 |
| Mly113I | GGCGCC | 2 cut(s) | 750, 771 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MslI | CAYNNNNRTG | 1 cut(s) | 515 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 3 cut(s) | 31, 131, 735 |
| MvaI | CCWGG | 2 cut(s) | 31, 735 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 598 |
| NarI | GGCGCC | 2 cut(s) | 750, 771 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NcoI | CCATGG | 2 cut(s) | 753, 774 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 3 cut(s) | 133, 228, 453 |
| NlaIII | CATG | 8 cut(s) | 122, 167, 334, 460, 520, 563, 757, 778 |
| NlaIV | GGNNCC | 4 cut(s) | 605, 751, 772, 793 |
| NmuCI | GTSAC | 1 cut(s) | 355 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 3 cut(s) | 456, 516, 559 |
| PciSI | GCTCTTC | 1 cut(s) | 321 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 817 |
| PkrI | GCNGC | 1 cut(s) | 749 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PluTI | GGCGCC | 2 cut(s) | 753, 774 |
| PmaCI | CACGTG | 2 cut(s) | 692, 710 |
| PmlI | CACGTG | 2 cut(s) | 692, 710 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 692, 710 |
| PsiI | TTATAA | 2 cut(s) | 528, 573 |
| Psp124BI | GAGCTC | 1 cut(s) | 316 |
| Psp6I | CCWGG | 2 cut(s) | 29, 733 |
| PspCI | CACGTG | 2 cut(s) | 692, 710 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 2 cut(s) | 29, 733 |
| PspN4I | GGNNCC | 4 cut(s) | 605, 751, 772, 793 |
| PstI | CTGCAG | 1 cut(s) | 674 |
| RseI | CAYNNNNRTG | 1 cut(s) | 515 |
| SacI | GAGCTC | 1 cut(s) | 316 |
| SapI | GCTCTTC | 1 cut(s) | 321 |
| SatI | GCNGC | 1 cut(s) | 748 |
| Sau3AI | GATC | 3 cut(s) | 133, 228, 453 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 3 cut(s) | 31, 131, 735 |
| SduI | GDGCHC | 2 cut(s) | 316, 826 |
| SfaNI | GCATC | 2 cut(s) | 174, 226 |
| SfcI | CTRYAG | 3 cut(s) | 323, 489, 670 |
| SfoI | GGCGCC | 2 cut(s) | 751, 772 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 515 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 6 cut(s) | 174, 304, 372, 523, 529, 568 |
| SsiI | CCGC | 3 cut(s) | 430, 601, 747 |
| SspDI | GGCGCC | 2 cut(s) | 749, 770 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 3 cut(s) | 15, 447, 804 |
| SstI | GAGCTC | 1 cut(s) | 316 |
| StyD4I | CCNGG | 3 cut(s) | 29, 129, 733 |
| StyI | CCWWGG | 3 cut(s) | 753, 774, 803 |
| TaaI | ACNGT | 1 cut(s) | 327 |
| TaiI | ACGT | 4 cut(s) | 634, 694, 712, 823 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 227 |
| TasI | AATT | 6 cut(s) | 174, 304, 372, 523, 529, 568 |
| TauI | GCSGC | 1 cut(s) | 750 |
| TscAI | CASTG | 1 cut(s) | 439 |
| TseFI | GTSAC | 1 cut(s) | 355 |
| Tsp45I | GTSAC | 1 cut(s) | 355 |
| TspDTI | ATGAA | 3 cut(s) | 24, 455, 548 |
| TspGWI | ACGGA | 1 cut(s) | 466 |
| TspRI | CASTG | 1 cut(s) | 439 |
| VneI | GTGCAC | 1 cut(s) | 822 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmaJI | CCTAGG | 1 cut(s) | 803 |
| XspI | CTAG | 3 cut(s) | 15, 447, 804 |