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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 267 |
| AatII | GACGTC | 1 cut(s) | 392 |
| Acc36I | ACCTGC | 1 cut(s) | 267 |
| AccI | GTMKAC | 1 cut(s) | 236 |
| AciI | CCGC | 3 cut(s) | 45, 383, 491 |
| AclWI | GGATC | 3 cut(s) | 505, 517, 518 |
| AcoI | YGGCCR | 2 cut(s) | 459, 481 |
| AcsI | RAATTY | 1 cut(s) | 740 |
| AcyI | GRCGYC | 2 cut(s) | 89, 389 |
| AfaI | GTAC | 2 cut(s) | 164, 696 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 103, 457, 992, 1062 |
| AflII | CTTAAG | 1 cut(s) | 497 |
| AflIII | ACRYGT | 2 cut(s) | 440, 1110 |
| AgeI | ACCGGT | 1 cut(s) | 940 |
| AgsI | TTSAA | 3 cut(s) | 56, 575, 688 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1040 |
| AjiI | CACGTC | 2 cut(s) | 426, 443 |
| AjnI | CCWGG | 1 cut(s) | 68 |
| AluBI | AGCT | 5 cut(s) | 205, 304, 431, 563, 874 |
| AluI | AGCT | 5 cut(s) | 205, 304, 431, 563, 874 |
| Alw26I | GTCTC | 1 cut(s) | 808 |
| AlwI | GGATC | 3 cut(s) | 505, 517, 518 |
| Ama87I | CYCGRG | 1 cut(s) | 605 |
| AoxI | GGCC | 2 cut(s) | 459, 481 |
| ApeKI | GCWGC | 2 cut(s) | 262, 349 |
| ApoI | RAATTY | 1 cut(s) | 740 |
| AsiGI | ACCGGT | 1 cut(s) | 940 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 717 |
| AsuC2I | CCSGG | 1 cut(s) | 98 |
| AsuHPI | GGTGA | 3 cut(s) | 437, 448, 482 |
| AvaI | CYCGRG | 1 cut(s) | 605 |
| AxyI | CCTNAGG | 1 cut(s) | 1014 |
| BalI | TGGCCA | 1 cut(s) | 483 |
| BamHI | GGATCC | 1 cut(s) | 510 |
| BanII | GRGCYC | 1 cut(s) | 277 |
| BbsI | GAAGAC | 2 cut(s) | 92, 788 |
| BbvI | GCAGC | 2 cut(s) | 274, 361 |
| BccI | CCATC | 3 cut(s) | 184, 500, 654 |
| BciT130I | CCWGG | 1 cut(s) | 70 |
| BcnI | CCSGG | 1 cut(s) | 98 |
| BcoDI | GTCTC | 1 cut(s) | 808 |
| BfaI | CTAG | 6 cut(s) | 219, 305, 375, 515, 936, 1032 |
| BfmI | CTRYAG | 3 cut(s) | 206, 260, 564 |
| BfrI | CTTAAG | 1 cut(s) | 497 |
| BfuAI | ACCTGC | 1 cut(s) | 267 |
| BglII | AGATCT | 1 cut(s) | 145 |
| BisI | GCNGC | 2 cut(s) | 263, 350 |
| BlsI | GCNGC | 2 cut(s) | 264, 351 |
| Bme1390I | CCNGG | 2 cut(s) | 70, 98 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1040 |
| BmeT110I | CYCGRG | 1 cut(s) | 605 |
| BmgBI | CACGTC | 2 cut(s) | 426, 443 |
| BmiI | GGNNCC | 4 cut(s) | 128, 512, 883, 949 |
| BmrFI | CCNGG | 2 cut(s) | 70, 98 |
| BmsI | GCATC | 2 cut(s) | 502, 864 |
| BpiI | GAAGAC | 2 cut(s) | 92, 788 |
| Bpu10I | CCTNAGC | 1 cut(s) | 432 |
| BpuMI | CCSGG | 1 cut(s) | 98 |
| BsaBI | GATNNNNATC | 1 cut(s) | 773 |
| BsaHI | GRCGYC | 2 cut(s) | 89, 389 |
| BsaJI | CCNNGG | 2 cut(s) | 68, 96 |
| BsaWI | WCCGGW | 1 cut(s) | 940 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 432, 462 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 103, 457, 992, 1062 |
| Bse118I | RCCGGY | 3 cut(s) | 123, 457, 940 |
| Bse1I | ACTGG | 1 cut(s) | 108 |
| Bse21I | CCTNAGG | 1 cut(s) | 1014 |
| Bse8I | GATNNNNATC | 1 cut(s) | 773 |
| BseBI | CCWGG | 1 cut(s) | 70 |
| BseDI | CCNNGG | 2 cut(s) | 68, 96 |
| BseJI | GATNNNNATC | 1 cut(s) | 773 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 103, 457, 992, 1062 |
| BseMII | CTCAG | 1 cut(s) | 446 |
| BseNI | ACTGG | 1 cut(s) | 108 |
| BseRI | GAGGAG | 1 cut(s) | 543 |
| BseXI | GCAGC | 2 cut(s) | 274, 361 |
| BsgI | GTGCAG | 1 cut(s) | 239 |
| BshFI | GGCC | 2 cut(s) | 461, 483 |
| BshTI | ACCGGT | 1 cut(s) | 940 |
| BsiHKCI | CYCGRG | 1 cut(s) | 605 |
| BsiSI | CCGG | 6 cut(s) | 98, 124, 451, 458, 849, 941 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 103, 457, 992, 1062 |
| BsmAI | GTCTC | 1 cut(s) | 808 |
| BsmBI | CGTCTC | 1 cut(s) | 808 |
| BsnI | GGCC | 2 cut(s) | 461, 483 |
| BsoBI | CYCGRG | 1 cut(s) | 605 |
| Bsp1286I | GDGCHC | 1 cut(s) | 277 |
| Bsp143I | GATC | 4 cut(s) | 145, 510, 522, 774 |
| BspACI | CCGC | 3 cut(s) | 45, 383, 491 |
| BspANI | GGCC | 2 cut(s) | 461, 483 |
| BspCNI | CTCAG | 1 cut(s) | 445 |
| BspHI | TCATGA | 1 cut(s) | 868 |
| BspLI | GGNNCC | 4 cut(s) | 128, 512, 883, 949 |
| BspMAI | CTGCAG | 1 cut(s) | 264 |
| BspMI | ACCTGC | 1 cut(s) | 267 |
| BspPI | GGATC | 3 cut(s) | 505, 517, 518 |
| BspTI | CTTAAG | 1 cut(s) | 497 |
| BsrFI | RCCGGY | 3 cut(s) | 123, 457, 940 |
| BsrI | ACTGG | 1 cut(s) | 108 |
| BssAI | RCCGGY | 3 cut(s) | 123, 457, 940 |
| BssECI | CCNNGG | 2 cut(s) | 68, 96 |
| BssMI | GATC | 4 cut(s) | 145, 510, 522, 774 |
| BssNI | GRCGYC | 2 cut(s) | 89, 389 |
| Bst2UI | CCWGG | 1 cut(s) | 70 |
| Bst4CI | ACNGT | 4 cut(s) | 187, 234, 568, 1099 |
| BstACI | GRCGYC | 2 cut(s) | 89, 389 |
| BstAFI | CTTAAG | 1 cut(s) | 497 |
| BstC8I | GCNNGC | 2 cut(s) | 383, 1088 |
| BstDEI | CTNAG | 2 cut(s) | 432, 1014 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 990 |
| BstKTI | GATC | 4 cut(s) | 148, 513, 525, 777 |
| BstMAI | GTCTC | 1 cut(s) | 808 |
| BstMBI | GATC | 4 cut(s) | 145, 510, 522, 774 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 262 |
| BstNI | CCWGG | 1 cut(s) | 70 |
| BstNSI | RCATGY | 1 cut(s) | 1090 |
| BstSCI | CCNGG | 2 cut(s) | 68, 96 |
| BstSFI | CTRYAG | 3 cut(s) | 206, 260, 564 |
| BstV1I | GCAGC | 2 cut(s) | 274, 361 |
| BstV2I | GAAGAC | 2 cut(s) | 92, 788 |
| BstX2I | RGATCY | 2 cut(s) | 145, 510 |
| BstYI | RGATCY | 2 cut(s) | 145, 510 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1014 |
| BsuRI | GGCC | 2 cut(s) | 461, 483 |
| BtrI | CACGTC | 2 cut(s) | 426, 443 |
| BtsIMutI | CAGTG | 2 cut(s) | 116, 759 |
| BveI | ACCTGC | 1 cut(s) | 267 |
| Cac8I | GCNNGC | 2 cut(s) | 383, 1088 |
| CciI | TCATGA | 1 cut(s) | 868 |
| Cfr10I | RCCGGY | 3 cut(s) | 123, 457, 940 |
| CseI | GACGC | 4 cut(s) | 97, 408, 658, 861 |
| Csp6I | GTAC | 2 cut(s) | 163, 695 |
| CspAI | ACCGGT | 1 cut(s) | 940 |
| CviAII | CATG | 3 cut(s) | 869, 886, 1087 |
| CviQI | GTAC | 2 cut(s) | 163, 695 |
| DdeI | CTNAG | 2 cut(s) | 432, 1014 |
| DpnI | GATC | 4 cut(s) | 147, 512, 524, 776 |
| DpnII | GATC | 4 cut(s) | 145, 510, 522, 774 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1040 |
| EaeI | YGGCCR | 2 cut(s) | 459, 481 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1040 |
| Eco24I | GRGCYC | 1 cut(s) | 277 |
| Eco81I | CCTNAGG | 1 cut(s) | 1014 |
| Eco88I | CYCGRG | 1 cut(s) | 605 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 990 |
| EcoRI | GAATTC | 1 cut(s) | 740 |
| EcoRII | CCWGG | 1 cut(s) | 68 |
| EcoT38I | GRGCYC | 1 cut(s) | 277 |
| Esp3I | CGTCTC | 1 cut(s) | 808 |
| FaeI | CATG | 3 cut(s) | 872, 889, 1090 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 705, 737 |
| FatI | CATG | 3 cut(s) | 868, 885, 1086 |
| FauI | CCCGC | 1 cut(s) | 390 |
| FblI | GTMKAC | 1 cut(s) | 236 |
| Fnu4HI | GCNGC | 2 cut(s) | 263, 350 |
| FriOI | GRGCYC | 1 cut(s) | 277 |
| Fsp4HI | GCNGC | 2 cut(s) | 263, 350 |
| FspBI | CTAG | 6 cut(s) | 219, 305, 375, 515, 936, 1032 |
| GluI | GCNGC | 2 cut(s) | 263, 350 |
| HaeIII | GGCC | 2 cut(s) | 461, 483 |
| HapII | CCGG | 6 cut(s) | 98, 124, 451, 458, 849, 941 |
| HgaI | GACGC | 4 cut(s) | 97, 408, 658, 861 |
| Hin1I | GRCGYC | 2 cut(s) | 89, 389 |
| Hin1II | CATG | 3 cut(s) | 872, 889, 1090 |
| HincII | GTYRAC | 1 cut(s) | 1108 |
| HindII | GTYRAC | 1 cut(s) | 1108 |
| HinfI | GANTC | 7 cut(s) | 73, 137, 158, 222, 632, 784, 965 |
| HpaII | CCGG | 6 cut(s) | 98, 124, 451, 458, 849, 941 |
| HphI | GGTGA | 3 cut(s) | 437, 448, 482 |
| Hpy166II | GTNNAC | 3 cut(s) | 237, 423, 1108 |
| Hpy188I | TCNGA | 7 cut(s) | 142, 227, 527, 540, 834, 898, 964 |
| Hpy188III | TCNNGA | 8 cut(s) | 77, 607, 629, 644, 778, 869, 936, 1032 |
| Hpy8I | GTNNAC | 3 cut(s) | 237, 423, 1108 |
| HpyAV | CCTTC | 5 cut(s) | 28, 32, 339, 805, 1060 |
| HpyCH4III | ACNGT | 4 cut(s) | 187, 234, 568, 1099 |
| HpyCH4IV | ACGT | 8 cut(s) | 389, 425, 442, 543, 891, 997, 1036, 1110 |
| HpyCH4V | TGCA | 4 cut(s) | 35, 256, 262, 1090 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 262 |
| HpyF3I | CTNAG | 2 cut(s) | 432, 1014 |
| HpySE526I | ACGT | 8 cut(s) | 389, 425, 442, 543, 891, 997, 1036, 1110 |
| Hsp92I | GRCGYC | 2 cut(s) | 89, 389 |
| Hsp92II | CATG | 3 cut(s) | 872, 889, 1090 |
| Kzo9I | GATC | 4 cut(s) | 145, 510, 522, 774 |
| LmnI | GCTCC | 3 cut(s) | 132, 881, 947 |
| Lsp1109I | GCAGC | 2 cut(s) | 274, 361 |
| LweI | GCATC | 2 cut(s) | 502, 864 |
| MaeI | CTAG | 6 cut(s) | 219, 305, 375, 515, 936, 1032 |
| MaeII | ACGT | 8 cut(s) | 389, 425, 442, 543, 891, 997, 1036, 1110 |
| MaeIII | GTNAC | 4 cut(s) | 436, 443, 470, 629 |
| MalI | GATC | 4 cut(s) | 147, 512, 524, 776 |
| MboI | GATC | 4 cut(s) | 145, 510, 522, 774 |
| MboII | GAAGA | 6 cut(s) | 97, 146, 155, 354, 793, 934 |
| MflI | RGATCY | 2 cut(s) | 145, 510 |
| MhlI | GDGCHC | 1 cut(s) | 277 |
| MlsI | TGGCCA | 1 cut(s) | 483 |
| MluCI | AATT | 6 cut(s) | 36, 706, 740, 957, 970, 1027 |
| MluNI | TGGCCA | 1 cut(s) | 483 |
| MlyI | GAGTC | 4 cut(s) | 82, 626, 778, 974 |
| Mox20I | TGGCCA | 1 cut(s) | 483 |
| MroXI | GAANNNNTTC | 1 cut(s) | 717 |
| MscI | TGGCCA | 1 cut(s) | 483 |
| MseI | TTAA | 2 cut(s) | 498, 734 |
| MslI | CAYNNNNRTG | 1 cut(s) | 917 |
| Msp20I | TGGCCA | 1 cut(s) | 483 |
| MspA1I | CMGCKG | 1 cut(s) | 385 |
| MspCI | CTTAAG | 1 cut(s) | 497 |
| MspI | CCGG | 6 cut(s) | 98, 124, 451, 458, 849, 941 |
| MspR9I | CCNGG | 2 cut(s) | 70, 98 |
| MvaI | CCWGG | 1 cut(s) | 70 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 262 |
| NciI | CCSGG | 1 cut(s) | 98 |
| NdeII | GATC | 4 cut(s) | 145, 510, 522, 774 |
| NlaIII | CATG | 3 cut(s) | 872, 889, 1090 |
| NlaIV | GGNNCC | 4 cut(s) | 128, 512, 883, 949 |
| NmuCI | GTSAC | 4 cut(s) | 436, 443, 470, 629 |
| NspI | RCATGY | 1 cut(s) | 1090 |
| PaeI | GCATGC | 1 cut(s) | 1090 |
| PaeR7I | CTCGAG | 1 cut(s) | 605 |
| PagI | TCATGA | 1 cut(s) | 868 |
| PaqCI | CACCTGC | 1 cut(s) | 267 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1042 |
| PdmI | GAANNNNTTC | 1 cut(s) | 717 |
| PfeI | GAWTC | 3 cut(s) | 137, 158, 222 |
| PinAI | ACCGGT | 1 cut(s) | 940 |
| PkrI | GCNGC | 2 cut(s) | 264, 351 |
| PleI | GAGTC | 4 cut(s) | 81, 626, 778, 973 |
| PpsI | GAGTC | 4 cut(s) | 81, 626, 778, 973 |
| Psp6I | CCWGG | 1 cut(s) | 68 |
| PspGI | CCWGG | 1 cut(s) | 68 |
| PspN4I | GGNNCC | 4 cut(s) | 128, 512, 883, 949 |
| PstI | CTGCAG | 1 cut(s) | 264 |
| PsuI | RGATCY | 2 cut(s) | 145, 510 |
| RsaI | GTAC | 2 cut(s) | 164, 696 |
| RsaNI | GTAC | 2 cut(s) | 163, 695 |
| RseI | CAYNNNNRTG | 1 cut(s) | 917 |
| SaqAI | TTAA | 2 cut(s) | 498, 734 |
| SatI | GCNGC | 2 cut(s) | 263, 350 |
| Sau3AI | GATC | 4 cut(s) | 145, 510, 522, 774 |
| SchI | GAGTC | 4 cut(s) | 82, 626, 778, 974 |
| ScrFI | CCNGG | 2 cut(s) | 70, 98 |
| SduI | GDGCHC | 1 cut(s) | 277 |
| SfaNI | GCATC | 2 cut(s) | 502, 864 |
| SfcI | CTRYAG | 3 cut(s) | 206, 260, 564 |
| Sfr274I | CTCGAG | 1 cut(s) | 605 |
| SlaI | CTCGAG | 1 cut(s) | 605 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 917 |
| SmlI | CTYRAG | 2 cut(s) | 497, 605 |
| SmoI | CTYRAG | 2 cut(s) | 497, 605 |
| SphI | GCATGC | 1 cut(s) | 1090 |
| Sse9I | AATT | 6 cut(s) | 36, 706, 740, 957, 970, 1027 |
| SsiI | CCGC | 3 cut(s) | 45, 383, 491 |
| SspMI | CTAG | 6 cut(s) | 219, 305, 375, 515, 936, 1032 |
| StyD4I | CCNGG | 2 cut(s) | 68, 96 |
| TaaI | ACNGT | 4 cut(s) | 187, 234, 568, 1099 |
| TaiI | ACGT | 8 cut(s) | 392, 428, 445, 546, 894, 1000, 1039, 1113 |
| TaqI | TCGA | 3 cut(s) | 156, 606, 777 |
| TasI | AATT | 6 cut(s) | 36, 706, 740, 957, 970, 1027 |
| TatI | WGTACW | 1 cut(s) | 694 |
| TfiI | GAWTC | 3 cut(s) | 137, 158, 222 |
| Tru1I | TTAA | 2 cut(s) | 498, 734 |
| Tru9I | TTAA | 2 cut(s) | 498, 734 |
| TscAI | CASTG | 2 cut(s) | 123, 766 |
| TseFI | GTSAC | 4 cut(s) | 436, 443, 470, 629 |
| TseI | GCWGC | 2 cut(s) | 262, 349 |
| Tsp45I | GTSAC | 4 cut(s) | 436, 443, 470, 629 |
| TspDTI | ATGAA | 5 cut(s) | 14, 350, 857, 902, 935 |
| TspGWI | ACGGA | 3 cut(s) | 161, 1034, 1107 |
| TspRI | CASTG | 2 cut(s) | 123, 766 |
| Vha464I | CTTAAG | 1 cut(s) | 497 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 990 |
| XapI | RAATTY | 1 cut(s) | 740 |
| XbaI | TCTAGA | 2 cut(s) | 935, 1031 |
| XceI | RCATGY | 1 cut(s) | 1090 |
| XhoI | CTCGAG | 1 cut(s) | 605 |
| XmiI | GTMKAC | 1 cut(s) | 236 |
| XmnI | GAANNNNTTC | 1 cut(s) | 717 |
| XspI | CTAG | 6 cut(s) | 219, 305, 375, 515, 936, 1032 |
| ZraI | GACGTC | 1 cut(s) | 390 |