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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 110 |
| AciI | CCGC | 4 cut(s) | 79, 355, 550, 771 |
| AclWI | GGATC | 1 cut(s) | 293 |
| AcoI | YGGCCR | 1 cut(s) | 616 |
| AcyI | GRCGYC | 1 cut(s) | 630 |
| AdeI | CACNNNGTG | 1 cut(s) | 811 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 60, 732 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 370, 667 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 711, 743 |
| AluBI | AGCT | 3 cut(s) | 155, 752, 803 |
| AluI | AGCT | 3 cut(s) | 155, 752, 803 |
| Alw21I | GWGCWC | 1 cut(s) | 754 |
| Alw26I | GTCTC | 1 cut(s) | 490 |
| AlwI | GGATC | 1 cut(s) | 293 |
| AoxI | GGCC | 3 cut(s) | 93, 122, 616 |
| AseI | ATTAAT | 1 cut(s) | 494 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 399 |
| AsuHPI | GGTGA | 2 cut(s) | 625, 760 |
| BaeGI | GKGCMC | 1 cut(s) | 739 |
| BalI | TGGCCA | 1 cut(s) | 618 |
| BanII | GRGCYC | 1 cut(s) | 754 |
| BauI | CACGAG | 1 cut(s) | 753 |
| BbsI | GAAGAC | 2 cut(s) | 273, 470 |
| Bbv12I | GWGCWC | 1 cut(s) | 754 |
| BccI | CCATC | 4 cut(s) | 215, 336, 620, 657 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 508, 542 |
| BciVI | GTATCC | 1 cut(s) | 733 |
| BcoDI | GTCTC | 1 cut(s) | 490 |
| BfaI | CTAG | 3 cut(s) | 126, 332, 839 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 733 |
| BmiI | GGNNCC | 1 cut(s) | 572 |
| BmsI | GCATC | 4 cut(s) | 94, 188, 436, 682 |
| BpiI | GAAGAC | 2 cut(s) | 273, 470 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 518 |
| BsaHI | GRCGYC | 1 cut(s) | 630 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 711, 741 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 60, 732 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseCI | ATCGAT | 1 cut(s) | 518 |
| BseGI | GGATG | 4 cut(s) | 179, 210, 238, 538 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 60, 732 |
| BseMII | CTCAG | 3 cut(s) | 133, 405, 681 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseSI | GKGCMC | 1 cut(s) | 739 |
| Bsh1285I | CGRYCG | 1 cut(s) | 100 |
| BshFI | GGCC | 3 cut(s) | 95, 124, 618 |
| BshVI | ATCGAT | 1 cut(s) | 518 |
| BsiEI | CGRYCG | 1 cut(s) | 100 |
| BsiHKAI | GWGCWC | 1 cut(s) | 754 |
| BslFI | GGGAC | 1 cut(s) | 615 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 60, 732 |
| BsmAI | GTCTC | 1 cut(s) | 490 |
| BsmBI | CGTCTC | 1 cut(s) | 490 |
| BsmFI | GGGAC | 1 cut(s) | 615 |
| BsnI | GGCC | 3 cut(s) | 95, 124, 618 |
| Bsp1286I | GDGCHC | 2 cut(s) | 739, 754 |
| Bsp143I | GATC | 4 cut(s) | 97, 285, 438, 835 |
| BspACI | CCGC | 4 cut(s) | 79, 355, 550, 771 |
| BspANI | GGCC | 3 cut(s) | 95, 124, 618 |
| BspCNI | CTCAG | 3 cut(s) | 132, 404, 682 |
| BspDI | ATCGAT | 1 cut(s) | 518 |
| BspLI | GGNNCC | 1 cut(s) | 572 |
| BspPI | GGATC | 1 cut(s) | 293 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssMI | GATC | 4 cut(s) | 97, 285, 438, 835 |
| BssNAI | GTATAC | 1 cut(s) | 111 |
| BssNI | GRCGYC | 1 cut(s) | 630 |
| BssSI | CACGAG | 1 cut(s) | 753 |
| Bst1107I | GTATAC | 1 cut(s) | 111 |
| Bst2BI | CACGAG | 1 cut(s) | 753 |
| Bst4CI | ACNGT | 2 cut(s) | 33, 145 |
| Bst6I | CTCTTC | 1 cut(s) | 571 |
| BstACI | GRCGYC | 1 cut(s) | 630 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 5 cut(s) | 119, 184, 391, 642, 690 |
| BstEII | GGTNACC | 1 cut(s) | 545 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 58 |
| BstF5I | GGATG | 4 cut(s) | 179, 210, 238, 538 |
| BstKTI | GATC | 4 cut(s) | 100, 288, 441, 838 |
| BstMAI | GTCTC | 1 cut(s) | 490 |
| BstMBI | GATC | 4 cut(s) | 97, 285, 438, 835 |
| BstMCI | CGRYCG | 1 cut(s) | 100 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 176, 691, 779, 800 |
| BstPI | GGTNACC | 1 cut(s) | 545 |
| BstSLI | GKGCMC | 1 cut(s) | 739 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 470 |
| BstX2I | RGATCY | 1 cut(s) | 285 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 285 |
| BstZ17I | GTATAC | 1 cut(s) | 111 |
| Bsu15I | ATCGAT | 1 cut(s) | 518 |
| BsuI | GTATCC | 1 cut(s) | 733 |
| BsuRI | GGCC | 3 cut(s) | 95, 124, 618 |
| BsuTUI | ATCGAT | 1 cut(s) | 518 |
| BtgZI | GCGATG | 1 cut(s) | 464 |
| BtsCI | GGATG | 4 cut(s) | 179, 210, 238, 538 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| ClaI | ATCGAT | 1 cut(s) | 518 |
| CseI | GACGC | 3 cut(s) | 612, 619, 668 |
| CviAII | CATG | 2 cut(s) | 587, 620 |
| DdeI | CTNAG | 5 cut(s) | 119, 184, 391, 642, 690 |
| DpnI | GATC | 4 cut(s) | 99, 287, 440, 837 |
| DpnII | GATC | 4 cut(s) | 97, 285, 438, 835 |
| DraIII | CACNNNGTG | 1 cut(s) | 811 |
| EaeI | YGGCCR | 1 cut(s) | 616 |
| Eam1104I | CTCTTC | 1 cut(s) | 571 |
| EarI | CTCTTC | 1 cut(s) | 571 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 752 |
| Eco147I | AGGCCT | 1 cut(s) | 124 |
| Eco24I | GRGCYC | 1 cut(s) | 754 |
| Eco53kI | GAGCTC | 1 cut(s) | 752 |
| Eco91I | GGTNACC | 1 cut(s) | 545 |
| EcoICRI | GAGCTC | 1 cut(s) | 752 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 58 |
| EcoO65I | GGTNACC | 1 cut(s) | 545 |
| EcoT38I | GRGCYC | 1 cut(s) | 754 |
| Esp3I | CGTCTC | 1 cut(s) | 490 |
| FaeI | CATG | 2 cut(s) | 590, 623 |
| FaqI | GGGAC | 1 cut(s) | 615 |
| FatI | CATG | 2 cut(s) | 586, 619 |
| FblI | GTMKAC | 1 cut(s) | 110 |
| FokI | GGATG | 4 cut(s) | 166, 197, 245, 545 |
| FriOI | GRGCYC | 1 cut(s) | 754 |
| FspBI | CTAG | 3 cut(s) | 126, 332, 839 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 3 cut(s) | 95, 124, 618 |
| HgaI | GACGC | 3 cut(s) | 612, 619, 668 |
| Hin1I | GRCGYC | 1 cut(s) | 630 |
| Hin1II | CATG | 2 cut(s) | 590, 623 |
| HinfI | GANTC | 6 cut(s) | 102, 220, 236, 466, 515, 536 |
| HphI | GGTGA | 2 cut(s) | 625, 760 |
| Hpy166II | GTNNAC | 1 cut(s) | 111 |
| Hpy188I | TCNGA | 2 cut(s) | 394, 691 |
| Hpy188III | TCNNGA | 8 cut(s) | 71, 158, 214, 332, 380, 755, 827, 839 |
| Hpy8I | GTNNAC | 1 cut(s) | 111 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 2 cut(s) | 33, 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 113, 312 |
| HpyCH4V | TGCA | 4 cut(s) | 29, 309, 529, 685 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 176, 691, 779, 800 |
| HpyF3I | CTNAG | 5 cut(s) | 119, 184, 391, 642, 690 |
| HpySE526I | ACGT | 2 cut(s) | 113, 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 630 |
| Hsp92II | CATG | 2 cut(s) | 590, 623 |
| Kzo9I | GATC | 4 cut(s) | 97, 285, 438, 835 |
| LmnI | GCTCC | 1 cut(s) | 246 |
| LpnPI | CCDG | 8 cut(s) | 23, 95, 106, 119, 227, 257, 286, 515 |
| LweI | GCATC | 4 cut(s) | 94, 188, 436, 682 |
| MaeI | CTAG | 3 cut(s) | 126, 332, 839 |
| MaeII | ACGT | 2 cut(s) | 113, 312 |
| MaeIII | GTNAC | 4 cut(s) | 5, 545, 631, 766 |
| MalI | GATC | 4 cut(s) | 99, 287, 440, 837 |
| MboI | GATC | 4 cut(s) | 97, 285, 438, 835 |
| MboII | GAAGA | 6 cut(s) | 275, 278, 308, 475, 588, 770 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MflI | RGATCY | 1 cut(s) | 285 |
| MhlI | GDGCHC | 2 cut(s) | 739, 754 |
| MlsI | TGGCCA | 1 cut(s) | 618 |
| MluCI | AATT | 4 cut(s) | 17, 42, 422, 762 |
| MluNI | TGGCCA | 1 cut(s) | 618 |
| MlyI | GAGTC | 2 cut(s) | 214, 460 |
| MnlI | CCTC | 4 cut(s) | 181, 362, 572, 592 |
| Mox20I | TGGCCA | 1 cut(s) | 618 |
| MroXI | GAANNNNTTC | 1 cut(s) | 399 |
| MscI | TGGCCA | 1 cut(s) | 618 |
| MseI | TTAA | 5 cut(s) | 90, 147, 408, 416, 494 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 624, 654 |
| Msp20I | TGGCCA | 1 cut(s) | 618 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 176, 691, 779, 800 |
| NdeII | GATC | 4 cut(s) | 97, 285, 438, 835 |
| NlaIII | CATG | 2 cut(s) | 590, 623 |
| NlaIV | GGNNCC | 1 cut(s) | 572 |
| NmuCI | GTSAC | 3 cut(s) | 5, 631, 766 |
| PceI | AGGCCT | 1 cut(s) | 124 |
| PdmI | GAANNNNTTC | 1 cut(s) | 399 |
| PfeI | GAWTC | 4 cut(s) | 102, 236, 515, 536 |
| Ple19I | CGATCG | 1 cut(s) | 100 |
| PleI | GAGTC | 2 cut(s) | 214, 460 |
| PpsI | GAGTC | 2 cut(s) | 214, 460 |
| PshBI | ATTAAT | 1 cut(s) | 494 |
| Psp124BI | GAGCTC | 1 cut(s) | 754 |
| PspEI | GGTNACC | 1 cut(s) | 545 |
| PspN4I | GGNNCC | 1 cut(s) | 572 |
| PsuI | RGATCY | 1 cut(s) | 285 |
| PvuI | CGATCG | 1 cut(s) | 100 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 624, 654 |
| SacI | GAGCTC | 1 cut(s) | 754 |
| SaqAI | TTAA | 5 cut(s) | 90, 147, 408, 416, 494 |
| Sau3AI | GATC | 4 cut(s) | 97, 285, 438, 835 |
| SchI | GAGTC | 2 cut(s) | 214, 460 |
| SduI | GDGCHC | 2 cut(s) | 739, 754 |
| SfaNI | GCATC | 4 cut(s) | 94, 188, 436, 682 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 624, 654 |
| SmlI | CTYRAG | 2 cut(s) | 89, 156 |
| SmoI | CTYRAG | 2 cut(s) | 89, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 42, 422, 762 |
| SseBI | AGGCCT | 1 cut(s) | 124 |
| SsiI | CCGC | 4 cut(s) | 79, 355, 550, 771 |
| SspMI | CTAG | 3 cut(s) | 126, 332, 839 |
| SstI | GAGCTC | 1 cut(s) | 754 |
| StuI | AGGCCT | 1 cut(s) | 124 |
| TaaI | ACNGT | 2 cut(s) | 33, 145 |
| TaiI | ACGT | 2 cut(s) | 116, 315 |
| TaqI | TCGA | 4 cut(s) | 100, 294, 513, 518 |
| TasI | AATT | 4 cut(s) | 17, 42, 422, 762 |
| TfiI | GAWTC | 4 cut(s) | 102, 236, 515, 536 |
| Tru1I | TTAA | 5 cut(s) | 90, 147, 408, 416, 494 |
| Tru9I | TTAA | 5 cut(s) | 90, 147, 408, 416, 494 |
| TseFI | GTSAC | 3 cut(s) | 5, 631, 766 |
| Tsp45I | GTSAC | 3 cut(s) | 5, 631, 766 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 549, 719 |
| TspGWI | ACGGA | 3 cut(s) | 434, 583, 715 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VspI | ATTAAT | 1 cut(s) | 494 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 58 |
| XbaI | TCTAGA | 2 cut(s) | 331, 838 |
| XmiI | GTMKAC | 1 cut(s) | 110 |
| XmnI | GAANNNNTTC | 1 cut(s) | 399 |
| XspI | CTAG | 3 cut(s) | 126, 332, 839 |