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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 225, 432 |
| AciI | CCGC | 7 cut(s) | 9, 163, 208, 223, 432, 514, 796 |
| AclWI | GGATC | 3 cut(s) | 26, 986, 1056 |
| AcoI | YGGCCR | 4 cut(s) | 3, 72, 115, 184 |
| AcsI | RAATTY | 2 cut(s) | 141, 863 |
| AcyI | GRCGYC | 1 cut(s) | 59 |
| AfaI | GTAC | 1 cut(s) | 683 |
| AflIII | ACRYGT | 1 cut(s) | 884 |
| AgsI | TTSAA | 3 cut(s) | 448, 811, 1022 |
| AjiI | CACGTC | 1 cut(s) | 571 |
| AjnI | CCWGG | 3 cut(s) | 89, 540, 564 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 723, 755 |
| AluBI | AGCT | 5 cut(s) | 26, 590, 596, 997, 1007 |
| AluI | AGCT | 5 cut(s) | 26, 590, 596, 997, 1007 |
| Alw26I | GTCTC | 3 cut(s) | 348, 727, 931 |
| AlwI | GGATC | 3 cut(s) | 26, 986, 1056 |
| Ama87I | CYCGRG | 1 cut(s) | 554 |
| AoxI | GGCC | 9 cut(s) | 3, 72, 115, 135, 184, 271, 308, 323, 375 |
| ApeKI | GCWGC | 3 cut(s) | 11, 281, 614 |
| ApoI | RAATTY | 2 cut(s) | 141, 863 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 840 |
| AspLEI | GCGC | 1 cut(s) | 1122 |
| AspS9I | GGNCC | 5 cut(s) | 189, 272, 309, 324, 376 |
| AsuHPI | GGTGA | 5 cut(s) | 54, 87, 140, 152, 646 |
| AvaI | CYCGRG | 1 cut(s) | 554 |
| AvaII | GGWCC | 1 cut(s) | 189 |
| AxyI | CCTNAGG | 1 cut(s) | 132 |
| BalI | TGGCCA | 2 cut(s) | 5, 117 |
| BanII | GRGCYC | 1 cut(s) | 44 |
| BbsI | GAAGAC | 1 cut(s) | 911 |
| BbvI | GCAGC | 3 cut(s) | 23, 293, 626 |
| BccI | CCATC | 5 cut(s) | 527, 650, 777, 931, 969 |
| BceAI | ACGGC | 2 cut(s) | 72, 390 |
| BciT130I | CCWGG | 3 cut(s) | 91, 542, 566 |
| BciVI | GTATCC | 1 cut(s) | 538 |
| BcoDI | GTCTC | 3 cut(s) | 348, 727, 931 |
| BfaI | CTAG | 4 cut(s) | 363, 561, 708, 773 |
| BfmI | CTRYAG | 2 cut(s) | 330, 969 |
| BfoI | RGCGCY | 1 cut(s) | 1123 |
| BfuI | GTATCC | 1 cut(s) | 538 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 623 |
| BisI | GCNGC | 4 cut(s) | 12, 208, 282, 615 |
| BlsI | GCNGC | 4 cut(s) | 13, 209, 283, 616 |
| Bme1390I | CCNGG | 3 cut(s) | 91, 542, 566 |
| Bme18I | GGWCC | 1 cut(s) | 189 |
| BmeT110I | CYCGRG | 1 cut(s) | 554 |
| BmgBI | CACGTC | 1 cut(s) | 571 |
| BmgT120I | GGNCC | 5 cut(s) | 189, 272, 309, 324, 376 |
| BmiI | GGNNCC | 1 cut(s) | 69 |
| BmrFI | CCNGG | 3 cut(s) | 91, 542, 566 |
| BmsI | GCATC | 4 cut(s) | 91, 136, 271, 529 |
| BpiI | GAAGAC | 1 cut(s) | 911 |
| BpmI | CTGGAG | 1 cut(s) | 662 |
| BpuEI | CTTGAG | 2 cut(s) | 509, 576 |
| BsaHI | GRCGYC | 1 cut(s) | 59 |
| BsaI | GGTCTC | 2 cut(s) | 348, 727 |
| BsaJI | CCNNGG | 2 cut(s) | 312, 1065 |
| BsaWI | WCCGGW | 3 cut(s) | 64, 150, 418 |
| Bse118I | RCCGGY | 3 cut(s) | 70, 123, 171 |
| Bse1I | ACTGG | 4 cut(s) | 75, 409, 484, 679 |
| Bse21I | CCTNAGG | 1 cut(s) | 132 |
| BseBI | CCWGG | 3 cut(s) | 91, 542, 566 |
| BseDI | CCNNGG | 2 cut(s) | 312, 1065 |
| BseGI | GGATG | 7 cut(s) | 82, 127, 441, 645, 673, 980, 1035 |
| BseNI | ACTGG | 4 cut(s) | 75, 409, 484, 679 |
| BseXI | GCAGC | 3 cut(s) | 23, 293, 626 |
| BseYI | CCCAGC | 1 cut(s) | 258 |
| Bsh1236I | CGCG | 2 cut(s) | 225, 432 |
| BshFI | GGCC | 9 cut(s) | 5, 74, 117, 137, 186, 273, 310, 325, 377 |
| BsiHKCI | CYCGRG | 1 cut(s) | 554 |
| BsiSI | CCGG | 8 cut(s) | 65, 71, 124, 151, 172, 187, 270, 419 |
| BsmAI | GTCTC | 3 cut(s) | 348, 727, 931 |
| BsmBI | CGTCTC | 1 cut(s) | 931 |
| BsnI | GGCC | 9 cut(s) | 5, 74, 117, 137, 186, 273, 310, 325, 377 |
| Bso31I | GGTCTC | 2 cut(s) | 348, 727 |
| BsoBI | CYCGRG | 1 cut(s) | 554 |
| Bsp1286I | GDGCHC | 1 cut(s) | 44 |
| Bsp143I | GATC | 4 cut(s) | 31, 237, 978, 1061 |
| BspACI | CCGC | 7 cut(s) | 9, 163, 208, 223, 432, 514, 796 |
| BspANI | GGCC | 9 cut(s) | 5, 74, 117, 137, 186, 273, 310, 325, 377 |
| BspFNI | CGCG | 2 cut(s) | 225, 432 |
| BspHI | TCATGA | 1 cut(s) | 991 |
| BspLI | GGNNCC | 1 cut(s) | 69 |
| BspMAI | CTGCAG | 1 cut(s) | 334 |
| BspPI | GGATC | 3 cut(s) | 26, 986, 1056 |
| BspQI | GCTCTTC | 1 cut(s) | 296 |
| BspTNI | GGTCTC | 2 cut(s) | 348, 727 |
| BsrFI | RCCGGY | 3 cut(s) | 70, 123, 171 |
| BsrI | ACTGG | 4 cut(s) | 75, 409, 484, 679 |
| BssAI | RCCGGY | 3 cut(s) | 70, 123, 171 |
| BssECI | CCNNGG | 2 cut(s) | 312, 1065 |
| BssMI | GATC | 4 cut(s) | 31, 237, 978, 1061 |
| BssNI | GRCGYC | 1 cut(s) | 59 |
| BssT1I | CCWWGG | 1 cut(s) | 312 |
| Bst2UI | CCWGG | 3 cut(s) | 91, 542, 566 |
| Bst4CI | ACNGT | 3 cut(s) | 106, 580, 970 |
| Bst6I | CTCTTC | 1 cut(s) | 296 |
| BstACI | GRCGYC | 1 cut(s) | 59 |
| BstC8I | GCNNGC | 3 cut(s) | 308, 518, 588 |
| BstDEI | CTNAG | 4 cut(s) | 132, 619, 945, 1110 |
| BstDSI | CCRYGG | 1 cut(s) | 1065 |
| BstEII | GGTNACC | 1 cut(s) | 93 |
| BstF5I | GGATG | 7 cut(s) | 82, 127, 441, 645, 673, 980, 1035 |
| BstFNI | CGCG | 2 cut(s) | 225, 432 |
| BstH2I | RGCGCY | 1 cut(s) | 1123 |
| BstHHI | GCGC | 1 cut(s) | 1122 |
| BstKTI | GATC | 4 cut(s) | 34, 240, 981, 1064 |
| BstMAI | GTCTC | 3 cut(s) | 348, 727, 931 |
| BstMBI | GATC | 4 cut(s) | 31, 237, 978, 1061 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 192, 623 |
| BstNI | CCWGG | 3 cut(s) | 91, 542, 566 |
| BstNSI | RCATGY | 1 cut(s) | 888 |
| BstPI | GGTNACC | 1 cut(s) | 93 |
| BstSCI | CCNGG | 3 cut(s) | 89, 540, 564 |
| BstSFI | CTRYAG | 2 cut(s) | 330, 969 |
| BstUI | CGCG | 2 cut(s) | 225, 432 |
| BstV1I | GCAGC | 3 cut(s) | 23, 293, 626 |
| BstV2I | GAAGAC | 1 cut(s) | 911 |
| BstX2I | RGATCY | 1 cut(s) | 1061 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 404 |
| BstYI | RGATCY | 1 cut(s) | 1061 |
| Bsu36I | CCTNAGG | 1 cut(s) | 132 |
| BsuI | GTATCC | 1 cut(s) | 538 |
| BsuRI | GGCC | 9 cut(s) | 5, 74, 117, 137, 186, 273, 310, 325, 377 |
| BtgI | CCRYGG | 1 cut(s) | 1065 |
| BtgZI | GCGATG | 2 cut(s) | 240, 905 |
| BtrI | CACGTC | 1 cut(s) | 571 |
| BtsCI | GGATG | 7 cut(s) | 82, 127, 441, 645, 673, 980, 1035 |
| BtsI | GCAGTG | 2 cut(s) | 240, 327 |
| BtsIMutI | CAGTG | 3 cut(s) | 240, 327, 402 |
| Cac8I | GCNNGC | 3 cut(s) | 308, 518, 588 |
| CciI | TCATGA | 1 cut(s) | 991 |
| CfoI | GCGC | 1 cut(s) | 1122 |
| Cfr10I | RCCGGY | 3 cut(s) | 70, 123, 171 |
| Cfr13I | GGNCC | 5 cut(s) | 189, 272, 309, 324, 376 |
| CseI | GACGC | 1 cut(s) | 48 |
| Csp6I | GTAC | 1 cut(s) | 682 |
| CviAII | CATG | 2 cut(s) | 885, 992 |
| CviQI | GTAC | 1 cut(s) | 682 |
| DdeI | CTNAG | 4 cut(s) | 132, 619, 945, 1110 |
| DpnI | GATC | 4 cut(s) | 33, 239, 980, 1063 |
| DpnII | GATC | 4 cut(s) | 31, 237, 978, 1061 |
| EaeI | YGGCCR | 4 cut(s) | 3, 72, 115, 184 |
| Eam1104I | CTCTTC | 1 cut(s) | 296 |
| EarI | CTCTTC | 1 cut(s) | 296 |
| EciI | GGCGGA | 1 cut(s) | 503 |
| Eco130I | CCWWGG | 1 cut(s) | 312 |
| Eco24I | GRGCYC | 1 cut(s) | 44 |
| Eco31I | GGTCTC | 2 cut(s) | 348, 727 |
| Eco47I | GGWCC | 1 cut(s) | 189 |
| Eco81I | CCTNAGG | 1 cut(s) | 132 |
| Eco88I | CYCGRG | 1 cut(s) | 554 |
| Eco91I | GGTNACC | 1 cut(s) | 93 |
| EcoO65I | GGTNACC | 1 cut(s) | 93 |
| EcoRI | GAATTC | 2 cut(s) | 141, 863 |
| EcoRII | CCWGG | 3 cut(s) | 89, 540, 564 |
| EcoT14I | CCWWGG | 1 cut(s) | 312 |
| EcoT38I | GRGCYC | 1 cut(s) | 44 |
| ErhI | CCWWGG | 1 cut(s) | 312 |
| Esp3I | CGTCTC | 1 cut(s) | 931 |
| FaeI | CATG | 2 cut(s) | 888, 995 |
| FatI | CATG | 2 cut(s) | 884, 991 |
| FauI | CCCGC | 1 cut(s) | 425 |
| FauNDI | CATATG | 1 cut(s) | 663 |
| Fnu4HI | GCNGC | 4 cut(s) | 12, 208, 282, 615 |
| FokI | GGATG | 7 cut(s) | 69, 114, 448, 632, 680, 987, 1022 |
| FriOI | GRGCYC | 1 cut(s) | 44 |
| Fsp4HI | GCNGC | 4 cut(s) | 12, 208, 282, 615 |
| FspBI | CTAG | 4 cut(s) | 363, 561, 708, 773 |
| GlaI | GCGC | 1 cut(s) | 1121 |
| GluI | GCNGC | 4 cut(s) | 12, 208, 282, 615 |
| GsaI | CCCAGC | 1 cut(s) | 262 |
| GsuI | CTGGAG | 1 cut(s) | 662 |
| HaeII | RGCGCY | 1 cut(s) | 1123 |
| HaeIII | GGCC | 9 cut(s) | 5, 74, 117, 137, 186, 273, 310, 325, 377 |
| HapII | CCGG | 8 cut(s) | 65, 71, 124, 151, 172, 187, 270, 419 |
| HgaI | GACGC | 1 cut(s) | 48 |
| HhaI | GCGC | 1 cut(s) | 1122 |
| Hin1I | GRCGYC | 1 cut(s) | 59 |
| Hin1II | CATG | 2 cut(s) | 888, 995 |
| Hin6I | GCGC | 1 cut(s) | 1120 |
| HinP1I | GCGC | 1 cut(s) | 1120 |
| HincII | GTYRAC | 3 cut(s) | 372, 410, 424 |
| HindII | GTYRAC | 3 cut(s) | 372, 410, 424 |
| HindIII | AAGCTT | 1 cut(s) | 594 |
| HpaII | CCGG | 8 cut(s) | 65, 71, 124, 151, 172, 187, 270, 419 |
| HphI | GGTGA | 5 cut(s) | 54, 87, 140, 152, 646 |
| Hpy166II | GTNNAC | 3 cut(s) | 372, 410, 424 |
| Hpy188I | TCNGA | 2 cut(s) | 487, 835 |
| Hpy188III | TCNNGA | 8 cut(s) | 29, 506, 554, 767, 821, 992, 1028, 1059 |
| Hpy8I | GTNNAC | 3 cut(s) | 372, 410, 424 |
| HpyAV | CCTTC | 7 cut(s) | 96, 108, 256, 289, 437, 705, 928 |
| HpyCH4III | ACNGT | 3 cut(s) | 106, 580, 970 |
| HpyCH4IV | ACGT | 2 cut(s) | 570, 747 |
| HpyCH4V | TGCA | 1 cut(s) | 332 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 192, 623 |
| HpyF3I | CTNAG | 4 cut(s) | 132, 619, 945, 1110 |
| HpySE526I | ACGT | 2 cut(s) | 570, 747 |
| Hsp92I | GRCGYC | 1 cut(s) | 59 |
| Hsp92II | CATG | 2 cut(s) | 888, 995 |
| HspAI | GCGC | 1 cut(s) | 1120 |
| Kzo9I | GATC | 4 cut(s) | 31, 237, 978, 1061 |
| LguI | GCTCTTC | 1 cut(s) | 296 |
| LmnI | GCTCC | 2 cut(s) | 681, 1004 |
| Lsp1109I | GCAGC | 3 cut(s) | 23, 293, 626 |
| LweI | GCATC | 4 cut(s) | 91, 136, 271, 529 |
| MaeI | CTAG | 4 cut(s) | 363, 561, 708, 773 |
| MaeII | ACGT | 2 cut(s) | 570, 747 |
| MaeIII | GTNAC | 6 cut(s) | 60, 93, 440, 752, 964, 1100 |
| MalI | GATC | 4 cut(s) | 33, 239, 980, 1063 |
| MboI | GATC | 4 cut(s) | 31, 237, 978, 1061 |
| MboII | GAAGA | 6 cut(s) | 137, 313, 394, 743, 916, 1057 |
| MfeI | CAATTG | 1 cut(s) | 390 |
| MflI | RGATCY | 1 cut(s) | 1061 |
| MhlI | GDGCHC | 1 cut(s) | 44 |
| MlsI | TGGCCA | 2 cut(s) | 5, 117 |
| MluCI | AATT | 6 cut(s) | 141, 390, 452, 863, 1054, 1093 |
| MluNI | TGGCCA | 2 cut(s) | 5, 117 |
| MlyI | GAGTC | 4 cut(s) | 224, 649, 749, 901 |
| MnlI | CCTC | 4 cut(s) | 616, 803, 1109, 1117 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 117 |
| MroXI | GAANNNNTTC | 1 cut(s) | 840 |
| MscI | TGGCCA | 2 cut(s) | 5, 117 |
| MseI | TTAA | 3 cut(s) | 21, 849, 857 |
| MslI | CAYNNNNRTG | 3 cut(s) | 650, 666, 1040 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 117 |
| MspI | CCGG | 8 cut(s) | 65, 71, 124, 151, 172, 187, 270, 419 |
| MspR9I | CCNGG | 3 cut(s) | 91, 542, 566 |
| MunI | CAATTG | 1 cut(s) | 390 |
| MvaI | CCWGG | 3 cut(s) | 91, 542, 566 |
| MvnI | CGCG | 2 cut(s) | 225, 432 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 192, 623 |
| NdeI | CATATG | 1 cut(s) | 663 |
| NdeII | GATC | 4 cut(s) | 31, 237, 978, 1061 |
| NlaIII | CATG | 2 cut(s) | 888, 995 |
| NlaIV | GGNNCC | 1 cut(s) | 69 |
| NmuCI | GTSAC | 4 cut(s) | 60, 93, 752, 1100 |
| NspI | RCATGY | 1 cut(s) | 888 |
| PaeR7I | CTCGAG | 1 cut(s) | 554 |
| PagI | TCATGA | 1 cut(s) | 991 |
| PciI | ACATGT | 1 cut(s) | 884 |
| PciSI | GCTCTTC | 1 cut(s) | 296 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 56 |
| PdmI | GAANNNNTTC | 1 cut(s) | 840 |
| PfeI | GAWTC | 7 cut(s) | 47, 202, 537, 550, 671, 957, 1088 |
| PfoI | TCCNGGA | 1 cut(s) | 540 |
| PkrI | GCNGC | 4 cut(s) | 13, 209, 283, 616 |
| PleI | GAGTC | 4 cut(s) | 224, 649, 749, 901 |
| PpsI | GAGTC | 4 cut(s) | 224, 649, 749, 901 |
| PscI | ACATGT | 1 cut(s) | 884 |
| Psp6I | CCWGG | 3 cut(s) | 89, 540, 564 |
| PspEI | GGTNACC | 1 cut(s) | 93 |
| PspFI | CCCAGC | 1 cut(s) | 258 |
| PspGI | CCWGG | 3 cut(s) | 89, 540, 564 |
| PspN4I | GGNNCC | 1 cut(s) | 69 |
| PspPI | GGNCC | 5 cut(s) | 189, 272, 309, 324, 376 |
| PstI | CTGCAG | 1 cut(s) | 334 |
| PsuI | RGATCY | 1 cut(s) | 1061 |
| RsaI | GTAC | 1 cut(s) | 683 |
| RsaNI | GTAC | 1 cut(s) | 682 |
| RseI | CAYNNNNRTG | 3 cut(s) | 650, 666, 1040 |
| SapI | GCTCTTC | 1 cut(s) | 296 |
| SaqAI | TTAA | 3 cut(s) | 21, 849, 857 |
| SatI | GCNGC | 4 cut(s) | 12, 208, 282, 615 |
| Sau3AI | GATC | 4 cut(s) | 31, 237, 978, 1061 |
| Sau96I | GGNCC | 5 cut(s) | 189, 272, 309, 324, 376 |
| SchI | GAGTC | 4 cut(s) | 224, 649, 749, 901 |
| ScrFI | CCNGG | 3 cut(s) | 91, 542, 566 |
| SduI | GDGCHC | 1 cut(s) | 44 |
| SfaNI | GCATC | 4 cut(s) | 91, 136, 271, 529 |
| SfcI | CTRYAG | 2 cut(s) | 330, 969 |
| Sfr274I | CTCGAG | 1 cut(s) | 554 |
| SinI | GGWCC | 1 cut(s) | 189 |
| SlaI | CTCGAG | 1 cut(s) | 554 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 650, 666, 1040 |
| SmlI | CTYRAG | 3 cut(s) | 524, 554, 591 |
| SmoI | CTYRAG | 3 cut(s) | 524, 554, 591 |
| Sse9I | AATT | 6 cut(s) | 141, 390, 452, 863, 1054, 1093 |
| SsiI | CCGC | 7 cut(s) | 9, 163, 208, 223, 432, 514, 796 |
| SspMI | CTAG | 4 cut(s) | 363, 561, 708, 773 |
| StyD4I | CCNGG | 3 cut(s) | 89, 540, 564 |
| StyI | CCWWGG | 1 cut(s) | 312 |
| TaaI | ACNGT | 3 cut(s) | 106, 580, 970 |
| TaiI | ACGT | 2 cut(s) | 573, 750 |
| TaqI | TCGA | 7 cut(s) | 30, 101, 531, 555, 729, 955, 1058 |
| TasI | AATT | 6 cut(s) | 141, 390, 452, 863, 1054, 1093 |
| TauI | GCSGC | 1 cut(s) | 210 |
| TfiI | GAWTC | 7 cut(s) | 47, 202, 537, 550, 671, 957, 1088 |
| Tru1I | TTAA | 3 cut(s) | 21, 849, 857 |
| Tru9I | TTAA | 3 cut(s) | 21, 849, 857 |
| TscAI | CASTG | 3 cut(s) | 247, 334, 409 |
| TseFI | GTSAC | 4 cut(s) | 60, 93, 752, 1100 |
| TseI | GCWGC | 3 cut(s) | 11, 281, 614 |
| Tsp45I | GTSAC | 4 cut(s) | 60, 93, 752, 1100 |
| TspDTI | ATGAA | 4 cut(s) | 707, 711, 980, 1025 |
| TspGWI | ACGGA | 2 cut(s) | 740, 1054 |
| TspRI | CASTG | 3 cut(s) | 247, 334, 409 |
| VpaK11BI | GGWCC | 1 cut(s) | 189 |
| XapI | RAATTY | 2 cut(s) | 141, 863 |
| XceI | RCATGY | 1 cut(s) | 888 |
| XhoI | CTCGAG | 1 cut(s) | 554 |
| XmnI | GAANNNNTTC | 1 cut(s) | 840 |
| XspI | CTAG | 4 cut(s) | 363, 561, 708, 773 |