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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AccB1I | GGYRCC | 1 cut(s) | 842 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 945 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 2 cut(s) | 361, 984 |
| AclWI | GGATC | 2 cut(s) | 551, 621 |
| AcoI | YGGCCR | 1 cut(s) | 829 |
| AcsI | RAATTY | 1 cut(s) | 23 |
| AcuI | CTGAAG | 1 cut(s) | 606 |
| AdeI | CACNNNGTG | 1 cut(s) | 1024 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 945 |
| AflIII | ACRYGT | 1 cut(s) | 60 |
| AgsI | TTSAA | 3 cut(s) | 376, 624, 880 |
| AjiI | CACGTC | 2 cut(s) | 136, 670 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 7 cut(s) | 155, 161, 562, 572, 643, 965, 1016 |
| AluI | AGCT | 7 cut(s) | 155, 161, 562, 572, 643, 965, 1016 |
| Alw21I | GWGCWC | 1 cut(s) | 967 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 2 cut(s) | 551, 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| AoxI | GGCC | 2 cut(s) | 93, 829 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 23 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 2 cut(s) | 687, 886 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AsuHPI | GGTGA | 1 cut(s) | 973 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BalI | TGGCCA | 1 cut(s) | 831 |
| BanI | GGYRCC | 1 cut(s) | 842 |
| BanII | GRGCYC | 1 cut(s) | 967 |
| BauI | CACGAG | 1 cut(s) | 966 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 967 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 5 cut(s) | 92, 218, 342, 496, 870 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciVI | GTATCC | 2 cut(s) | 706, 946 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfoI | RGCGCY | 1 cut(s) | 887 |
| BfuI | GTATCC | 2 cut(s) | 706, 946 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 2 cut(s) | 136, 670 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BmiI | GGNNCC | 2 cut(s) | 785, 844 |
| BmsI | GCATC | 3 cut(s) | 94, 366, 904 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaWI | WCCGGW | 1 cut(s) | 649 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 945 |
| Bse1I | ACTGG | 4 cut(s) | 24, 49, 244, 939 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseGI | GGATG | 4 cut(s) | 210, 238, 357, 600 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 945 |
| BseMII | CTCAG | 2 cut(s) | 411, 894 |
| BseNI | ACTGG | 4 cut(s) | 24, 49, 244, 939 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 2 cut(s) | 95, 831 |
| BshNI | GGYRCC | 1 cut(s) | 842 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 967 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 650 |
| BslFI | GGGAC | 1 cut(s) | 656 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 945 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsmFI | GGGAC | 1 cut(s) | 656 |
| BsnI | GGCC | 2 cut(s) | 95, 831 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 967 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 4 cut(s) | 444, 543, 626, 1036 |
| BspACI | CCGC | 2 cut(s) | 361, 984 |
| BspANI | GGCC | 2 cut(s) | 95, 831 |
| BspCNI | CTCAG | 2 cut(s) | 410, 895 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 2 cut(s) | 785, 844 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspPI | GGATC | 2 cut(s) | 551, 621 |
| BspQI | GCTCTTC | 1 cut(s) | 582 |
| BspT107I | GGYRCC | 1 cut(s) | 842 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 4 cut(s) | 24, 49, 244, 939 |
| BssMI | GATC | 4 cut(s) | 444, 543, 626, 1036 |
| BssSI | CACGAG | 1 cut(s) | 966 |
| Bst2BI | CACGAG | 1 cut(s) | 966 |
| Bst6I | CTCTTC | 2 cut(s) | 582, 784 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 7 cut(s) | 184, 397, 510, 675, 707, 855, 903 |
| BstF5I | GGATG | 4 cut(s) | 210, 238, 357, 600 |
| BstH2I | RGCGCY | 1 cut(s) | 887 |
| BstHHI | GCGC | 2 cut(s) | 687, 886 |
| BstKTI | GATC | 4 cut(s) | 447, 546, 629, 1039 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 4 cut(s) | 444, 543, 626, 1036 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 691, 881, 992, 1013 |
| BstNSI | RCATGY | 1 cut(s) | 64 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 839 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 2 cut(s) | 706, 946 |
| BsuRI | GGCC | 2 cut(s) | 95, 831 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 2 cut(s) | 136, 670 |
| BtsCI | GGATG | 4 cut(s) | 210, 238, 357, 600 |
| BtsIMutI | CAGTG | 1 cut(s) | 251 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 2 cut(s) | 687, 886 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CseI | GACGC | 1 cut(s) | 881 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 808, 843 |
| CviAII | CATG | 4 cut(s) | 61, 557, 593, 833 |
| DdeI | CTNAG | 7 cut(s) | 184, 397, 510, 675, 707, 855, 903 |
| DpnI | GATC | 4 cut(s) | 446, 545, 628, 1038 |
| DpnII | GATC | 4 cut(s) | 444, 543, 626, 1036 |
| DraIII | CACNNNGTG | 1 cut(s) | 1024 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| EaeI | YGGCCR | 1 cut(s) | 829 |
| Eam1104I | CTCTTC | 2 cut(s) | 582, 784 |
| EarI | CTCTTC | 2 cut(s) | 582, 784 |
| Ecl136II | GAGCTC | 1 cut(s) | 965 |
| Eco24I | GRGCYC | 1 cut(s) | 967 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco53kI | GAGCTC | 1 cut(s) | 965 |
| Eco57I | CTGAAG | 1 cut(s) | 606 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 965 |
| EcoRI | GAATTC | 1 cut(s) | 23 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 967 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 4 cut(s) | 64, 560, 596, 836 |
| FaqI | GGGAC | 1 cut(s) | 656 |
| FatI | CATG | 4 cut(s) | 60, 556, 592, 832 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 4 cut(s) | 197, 245, 344, 587 |
| FriOI | GRGCYC | 1 cut(s) | 967 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GlaI | GCGC | 2 cut(s) | 686, 885 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 887 |
| HaeIII | GGCC | 2 cut(s) | 95, 831 |
| HapII | CCGG | 1 cut(s) | 650 |
| HgaI | GACGC | 1 cut(s) | 881 |
| HhaI | GCGC | 2 cut(s) | 687, 886 |
| Hin1II | CATG | 4 cut(s) | 64, 560, 596, 836 |
| Hin6I | GCGC | 2 cut(s) | 685, 884 |
| HinP1I | GCGC | 2 cut(s) | 685, 884 |
| HincII | GTYRAC | 1 cut(s) | 797 |
| HindII | GTYRAC | 1 cut(s) | 797 |
| HindIII | AAGCTT | 2 cut(s) | 159, 641 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 220, 236, 320, 472, 653, 899 |
| HpaII | CCGG | 1 cut(s) | 650 |
| HphI | GGTGA | 1 cut(s) | 973 |
| Hpy166II | GTNNAC | 1 cut(s) | 797 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 904 |
| Hpy188III | TCNNGA | 9 cut(s) | 71, 119, 386, 557, 624, 650, 720, 924, 968 |
| Hpy8I | GTNNAC | 1 cut(s) | 797 |
| HpyAV | CCTTC | 3 cut(s) | 270, 493, 749 |
| HpyCH4IV | ACGT | 5 cut(s) | 135, 312, 669, 724, 799 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 691, 881, 992, 1013 |
| HpyF3I | CTNAG | 7 cut(s) | 184, 397, 510, 675, 707, 855, 903 |
| HpySE526I | ACGT | 5 cut(s) | 135, 312, 669, 724, 799 |
| Hsp92II | CATG | 4 cut(s) | 64, 560, 596, 836 |
| HspAI | GCGC | 2 cut(s) | 685, 884 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 4 cut(s) | 444, 543, 626, 1036 |
| LguI | GCTCTTC | 1 cut(s) | 582 |
| LmnI | GCTCC | 2 cut(s) | 246, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 3 cut(s) | 94, 366, 904 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 5 cut(s) | 135, 312, 669, 724, 799 |
| MaeIII | GTNAC | 6 cut(s) | 317, 505, 529, 665, 758, 979 |
| MalI | GATC | 4 cut(s) | 446, 545, 628, 1038 |
| MboI | GATC | 4 cut(s) | 444, 543, 626, 1036 |
| MboII | GAAGA | 8 cut(s) | 275, 278, 308, 481, 599, 622, 801, 983 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 1 cut(s) | 967 |
| MlsI | TGGCCA | 1 cut(s) | 831 |
| MluCI | AATT | 5 cut(s) | 23, 462, 619, 658, 975 |
| MluNI | TGGCCA | 1 cut(s) | 831 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MmeI | TCCRAC | 1 cut(s) | 547 |
| MnlI | CCTC | 5 cut(s) | 181, 785, 805, 809, 897 |
| Mox20I | TGGCCA | 1 cut(s) | 831 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 831 |
| MseI | TTAA | 3 cut(s) | 414, 422, 461 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 231, 605, 837, 867 |
| Msp20I | TGGCCA | 1 cut(s) | 831 |
| MspI | CCGG | 1 cut(s) | 650 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 691, 881, 992, 1013 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 4 cut(s) | 444, 543, 626, 1036 |
| NlaIII | CATG | 4 cut(s) | 64, 560, 596, 836 |
| NlaIV | GGNNCC | 2 cut(s) | 785, 844 |
| NmuCI | GTSAC | 3 cut(s) | 317, 665, 979 |
| NspI | RCATGY | 1 cut(s) | 64 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PciI | ACATGT | 1 cut(s) | 60 |
| PciSI | GCTCTTC | 1 cut(s) | 582 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 964 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 653, 899 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 945 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PscI | ACATGT | 1 cut(s) | 60 |
| Psp124BI | GAGCTC | 1 cut(s) | 967 |
| PspN4I | GGNNCC | 2 cut(s) | 785, 844 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 231, 605, 837, 867 |
| SacI | GAGCTC | 1 cut(s) | 967 |
| SapI | GCTCTTC | 1 cut(s) | 582 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 461 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 4 cut(s) | 444, 543, 626, 1036 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| SduI | GDGCHC | 1 cut(s) | 967 |
| SfaNI | GCATC | 3 cut(s) | 94, 366, 904 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 231, 605, 837, 867 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 5 cut(s) | 23, 462, 619, 658, 975 |
| SsiI | CCGC | 2 cut(s) | 361, 984 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| SstI | GAGCTC | 1 cut(s) | 967 |
| TaiI | ACGT | 5 cut(s) | 138, 315, 672, 727, 802 |
| TaqI | TCGA | 3 cut(s) | 120, 525, 925 |
| TasI | AATT | 5 cut(s) | 23, 462, 619, 658, 975 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 653, 899 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 461 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 461 |
| TscAI | CASTG | 1 cut(s) | 251 |
| TseFI | GTSAC | 3 cut(s) | 317, 665, 979 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 3 cut(s) | 317, 665, 979 |
| TspDTI | ATGAA | 6 cut(s) | 17, 272, 276, 440, 545, 590 |
| TspGWI | ACGGA | 4 cut(s) | 305, 556, 619, 796 |
| TspRI | CASTG | 1 cut(s) | 251 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 945 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XapI | RAATTY | 1 cut(s) | 23 |
| XceI | RCATGY | 1 cut(s) | 64 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 126, 338 |