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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 528, 573 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 636 |
| Acc36I | ACCTGC | 1 cut(s) | 663 |
| AccB1I | GGYRCC | 2 cut(s) | 121, 749 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 711 |
| AccBSI | CCGCTC | 1 cut(s) | 601 |
| AciI | CCGC | 3 cut(s) | 430, 601, 649 |
| AclWI | GGATC | 2 cut(s) | 141, 461 |
| AcuI | CTGAAG | 2 cut(s) | 456, 1008 |
| AcvI | CACGTG | 1 cut(s) | 692 |
| AdeI | CACNNNGTG | 1 cut(s) | 695 |
| AfaI | GTAC | 1 cut(s) | 923 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 64, 336, 587, 588, 658, 711, 740 |
| AflIII | ACRYGT | 3 cut(s) | 689, 707, 813 |
| AgsI | TTSAA | 8 cut(s) | 80, 96, 257, 286, 534, 850, 882, 982 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 353 |
| AjnI | CCWGG | 2 cut(s) | 117, 733 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 8 cut(s) | 247, 314, 364, 370, 472, 494, 878, 986 |
| AluI | AGCT | 8 cut(s) | 247, 314, 364, 370, 472, 494, 878, 986 |
| Alw21I | GWGCWC | 2 cut(s) | 784, 1002 |
| Alw44I | GTGCAC | 2 cut(s) | 780, 998 |
| AlwI | GGATC | 2 cut(s) | 141, 461 |
| ApaLI | GTGCAC | 2 cut(s) | 780, 998 |
| ApeKI | GCWGC | 1 cut(s) | 1010 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 315 |
| AspA2I | CCTAGG | 1 cut(s) | 761 |
| AspLEI | GCGC | 1 cut(s) | 273 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 1 cut(s) | 958 |
| AvrII | CCTAGG | 1 cut(s) | 761 |
| BaeGI | GKGCMC | 2 cut(s) | 784, 1002 |
| BanI | GGYRCC | 2 cut(s) | 121, 749 |
| BauI | CACGAG | 2 cut(s) | 457, 515 |
| BbrPI | CACGTG | 1 cut(s) | 692 |
| Bbv12I | GWGCWC | 2 cut(s) | 784, 1002 |
| BbvI | GCAGC | 1 cut(s) | 997 |
| BccI | CCATC | 1 cut(s) | 941 |
| BciT130I | CCWGG | 2 cut(s) | 119, 735 |
| BciVI | GTATCC | 1 cut(s) | 740 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 3 cut(s) | 15, 762, 875 |
| BfmI | CTRYAG | 3 cut(s) | 323, 489, 1011 |
| BfuAI | ACCTGC | 1 cut(s) | 663 |
| BfuI | GTATCC | 1 cut(s) | 740 |
| BisI | GCNGC | 1 cut(s) | 1011 |
| BlnI | CCTAGG | 1 cut(s) | 761 |
| BlsI | GCNGC | 1 cut(s) | 1012 |
| Bme1390I | CCNGG | 3 cut(s) | 119, 131, 735 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 353 |
| BmiI | GGNNCC | 3 cut(s) | 123, 605, 751 |
| BmrFI | CCNGG | 3 cut(s) | 119, 131, 735 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 997 |
| BoxI | GACNNNNGTC | 1 cut(s) | 816 |
| BpmI | CTGGAG | 1 cut(s) | 386 |
| BpuEI | CTTGAG | 2 cut(s) | 153, 925 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| Bsa29I | ATCGAT | 1 cut(s) | 823 |
| BsaAI | YACGTR | 1 cut(s) | 692 |
| BsaBI | GATNNNNATC | 1 cut(s) | 960 |
| BsaJI | CCNNGG | 2 cut(s) | 733, 761 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 209, 239, 706, 736, 742, 772 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 64, 336, 587, 588, 658, 711, 740 |
| Bse3DI | GCAATG | 1 cut(s) | 860 |
| Bse8I | GATNNNNATC | 1 cut(s) | 960 |
| BseBI | CCWGG | 2 cut(s) | 119, 735 |
| BseCI | ATCGAT | 1 cut(s) | 823 |
| BseDI | CCNNGG | 2 cut(s) | 733, 761 |
| BseGI | GGATG | 2 cut(s) | 241, 1012 |
| BseJI | GATNNNNATC | 1 cut(s) | 960 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 64, 336, 587, 588, 658, 711, 740 |
| BseMI | GCAATG | 1 cut(s) | 860 |
| BseMII | CTCAG | 1 cut(s) | 486 |
| BseSI | GKGCMC | 2 cut(s) | 784, 1002 |
| BseXI | GCAGC | 1 cut(s) | 997 |
| BshNI | GGYRCC | 2 cut(s) | 121, 749 |
| BshVI | ATCGAT | 1 cut(s) | 823 |
| BsiHKAI | GWGCWC | 2 cut(s) | 784, 1002 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 642 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 64, 336, 587, 588, 658, 711, 740 |
| BsmFI | GGGAC | 1 cut(s) | 642 |
| Bsp1286I | GDGCHC | 2 cut(s) | 784, 1002 |
| Bsp143I | GATC | 2 cut(s) | 133, 453 |
| BspACI | CCGC | 3 cut(s) | 430, 601, 649 |
| BspCNI | CTCAG | 1 cut(s) | 487 |
| BspDI | ATCGAT | 1 cut(s) | 823 |
| BspHI | TCATGA | 2 cut(s) | 180, 559 |
| BspLI | GGNNCC | 3 cut(s) | 123, 605, 751 |
| BspMAI | CTGCAG | 1 cut(s) | 1015 |
| BspMI | ACCTGC | 1 cut(s) | 663 |
| BspPI | GGATC | 2 cut(s) | 141, 461 |
| BspQI | GCTCTTC | 1 cut(s) | 321 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 749 |
| BsrBI | CCGCTC | 1 cut(s) | 601 |
| BsrDI | GCAATG | 1 cut(s) | 860 |
| BssECI | CCNNGG | 2 cut(s) | 733, 761 |
| BssMI | GATC | 2 cut(s) | 133, 453 |
| BssSI | CACGAG | 2 cut(s) | 457, 515 |
| BssT1I | CCWWGG | 1 cut(s) | 761 |
| Bst2BI | CACGAG | 2 cut(s) | 457, 515 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 735 |
| Bst4CI | ACNGT | 2 cut(s) | 327, 899 |
| Bst6I | CTCTTC | 1 cut(s) | 321 |
| BstBAI | YACGTR | 1 cut(s) | 692 |
| BstC8I | GCNNGC | 2 cut(s) | 865, 869 |
| BstDEI | CTNAG | 4 cut(s) | 209, 495, 549, 609 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 241, 1012 |
| BstHHI | GCGC | 1 cut(s) | 273 |
| BstKTI | GATC | 2 cut(s) | 136, 456 |
| BstMBI | GATC | 2 cut(s) | 133, 453 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 864 |
| BstNI | CCWGG | 2 cut(s) | 119, 735 |
| BstNSI | RCATGY | 2 cut(s) | 167, 817 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 816 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 3 cut(s) | 117, 129, 733 |
| BstSFI | CTRYAG | 3 cut(s) | 323, 489, 1011 |
| BstSLI | GKGCMC | 2 cut(s) | 784, 1002 |
| BstV1I | GCAGC | 1 cut(s) | 997 |
| Bsu15I | ATCGAT | 1 cut(s) | 823 |
| BsuI | GTATCC | 1 cut(s) | 740 |
| BsuTUI | ATCGAT | 1 cut(s) | 823 |
| BtsCI | GGATG | 2 cut(s) | 241, 1012 |
| BtsIMutI | CAGTG | 2 cut(s) | 432, 904 |
| BveI | ACCTGC | 1 cut(s) | 663 |
| Cac8I | GCNNGC | 2 cut(s) | 865, 869 |
| CciI | TCATGA | 2 cut(s) | 180, 559 |
| CfoI | GCGC | 1 cut(s) | 273 |
| ClaI | ATCGAT | 1 cut(s) | 823 |
| Csp6I | GTAC | 1 cut(s) | 922 |
| CviAII | CATG | 5 cut(s) | 164, 181, 331, 560, 814 |
| CviQI | GTAC | 1 cut(s) | 922 |
| DdeI | CTNAG | 4 cut(s) | 209, 495, 549, 609 |
| DpnI | GATC | 2 cut(s) | 135, 455 |
| DpnII | GATC | 2 cut(s) | 133, 453 |
| DraIII | CACNNNGTG | 1 cut(s) | 695 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 636 |
| DriI | GACNNNNNGTC | 1 cut(s) | 353 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 636 |
| Eam1104I | CTCTTC | 1 cut(s) | 321 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 353 |
| EarI | CTCTTC | 1 cut(s) | 321 |
| Eco130I | CCWWGG | 1 cut(s) | 761 |
| Eco57I | CTGAAG | 2 cut(s) | 456, 1008 |
| Eco72I | CACGTG | 1 cut(s) | 692 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 117, 733 |
| EcoT14I | CCWWGG | 1 cut(s) | 761 |
| ErhI | CCWWGG | 1 cut(s) | 761 |
| FaeI | CATG | 5 cut(s) | 167, 184, 334, 563, 817 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 909, 941 |
| FaqI | GGGAC | 1 cut(s) | 642 |
| FatI | CATG | 5 cut(s) | 163, 180, 330, 559, 813 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 1011 |
| FokI | GGATG | 2 cut(s) | 248, 1019 |
| Fsp4HI | GCNGC | 1 cut(s) | 1011 |
| FspBI | CTAG | 3 cut(s) | 15, 762, 875 |
| GlaI | GCGC | 1 cut(s) | 272 |
| GluI | GCNGC | 1 cut(s) | 1011 |
| GsuI | CTGGAG | 1 cut(s) | 386 |
| HapII | CCGG | 1 cut(s) | 131 |
| HhaI | GCGC | 1 cut(s) | 273 |
| Hin1II | CATG | 5 cut(s) | 167, 184, 334, 563, 817 |
| Hin6I | GCGC | 1 cut(s) | 271 |
| HinP1I | GCGC | 1 cut(s) | 271 |
| HinfI | GANTC | 3 cut(s) | 18, 23, 38 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 1 cut(s) | 958 |
| Hpy166II | GTNNAC | 4 cut(s) | 347, 782, 922, 1000 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 310 |
| Hpy188III | TCNNGA | 6 cut(s) | 181, 457, 517, 534, 560, 882 |
| Hpy8I | GTNNAC | 4 cut(s) | 347, 782, 922, 1000 |
| HpyAV | CCTTC | 2 cut(s) | 403, 656 |
| HpyCH4III | ACNGT | 2 cut(s) | 327, 899 |
| HpyCH4IV | ACGT | 4 cut(s) | 631, 691, 709, 778 |
| HpyCH4V | TGCA | 9 cut(s) | 187, 239, 578, 594, 782, 858, 929, 1000, 1013 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 864 |
| HpyF3I | CTNAG | 4 cut(s) | 209, 495, 549, 609 |
| HpySE526I | ACGT | 4 cut(s) | 631, 691, 709, 778 |
| Hsp92II | CATG | 5 cut(s) | 167, 184, 334, 563, 817 |
| HspAI | GCGC | 1 cut(s) | 271 |
| Kzo9I | GATC | 2 cut(s) | 133, 453 |
| LguI | GCTCTTC | 1 cut(s) | 321 |
| LmnI | GCTCC | 2 cut(s) | 367, 598 |
| Lsp1109I | GCAGC | 1 cut(s) | 997 |
| LweI | GCATC | 3 cut(s) | 174, 226, 997 |
| MaeI | CTAG | 3 cut(s) | 15, 762, 875 |
| MaeII | ACGT | 4 cut(s) | 631, 691, 709, 778 |
| MaeIII | GTNAC | 3 cut(s) | 67, 355, 899 |
| MalI | GATC | 2 cut(s) | 135, 455 |
| MbiI | CCGCTC | 1 cut(s) | 601 |
| MboI | GATC | 2 cut(s) | 133, 453 |
| MboII | GAAGA | 7 cut(s) | 308, 944, 947, 950, 953, 956, 1001 |
| MhlI | GDGCHC | 2 cut(s) | 784, 1002 |
| MluCI | AATT | 6 cut(s) | 304, 372, 523, 529, 568, 788 |
| MlyI | GAGTC | 3 cut(s) | 12, 17, 32 |
| MmeI | TCCRAC | 1 cut(s) | 692 |
| MroXI | GAANNNNTTC | 1 cut(s) | 315 |
| MseI | TTAA | 1 cut(s) | 791 |
| MslI | CAYNNNNRTG | 3 cut(s) | 515, 825, 1005 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 3 cut(s) | 119, 131, 735 |
| MvaI | CCWGG | 2 cut(s) | 119, 735 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 864 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 2 cut(s) | 133, 453 |
| NlaIII | CATG | 5 cut(s) | 167, 184, 334, 563, 817 |
| NlaIV | GGNNCC | 3 cut(s) | 123, 605, 751 |
| NmuCI | GTSAC | 2 cut(s) | 355, 899 |
| NspI | RCATGY | 2 cut(s) | 167, 817 |
| PagI | TCATGA | 2 cut(s) | 180, 559 |
| PciI | ACATGT | 1 cut(s) | 813 |
| PciSI | GCTCTTC | 1 cut(s) | 321 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 775 |
| PdmI | GAANNNNTTC | 1 cut(s) | 315 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 711 |
| PkrI | GCNGC | 1 cut(s) | 1012 |
| PleI | GAGTC | 3 cut(s) | 12, 17, 32 |
| PmaCI | CACGTG | 1 cut(s) | 692 |
| PmlI | CACGTG | 1 cut(s) | 692 |
| PpsI | GAGTC | 3 cut(s) | 12, 17, 32 |
| Ppu21I | YACGTR | 1 cut(s) | 692 |
| PscI | ACATGT | 1 cut(s) | 813 |
| PshAI | GACNNNNGTC | 1 cut(s) | 816 |
| PsiI | TTATAA | 2 cut(s) | 528, 573 |
| Psp6I | CCWGG | 2 cut(s) | 117, 733 |
| PspCI | CACGTG | 1 cut(s) | 692 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 2 cut(s) | 117, 733 |
| PspN4I | GGNNCC | 3 cut(s) | 123, 605, 751 |
| PstI | CTGCAG | 1 cut(s) | 1015 |
| RsaI | GTAC | 1 cut(s) | 923 |
| RsaNI | GTAC | 1 cut(s) | 922 |
| RseI | CAYNNNNRTG | 3 cut(s) | 515, 825, 1005 |
| SapI | GCTCTTC | 1 cut(s) | 321 |
| SaqAI | TTAA | 1 cut(s) | 791 |
| SatI | GCNGC | 1 cut(s) | 1011 |
| Sau3AI | GATC | 2 cut(s) | 133, 453 |
| SchI | GAGTC | 3 cut(s) | 12, 17, 32 |
| ScrFI | CCNGG | 3 cut(s) | 119, 131, 735 |
| SduI | GDGCHC | 2 cut(s) | 784, 1002 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 997 |
| SfcI | CTRYAG | 3 cut(s) | 323, 489, 1011 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 515, 825, 1005 |
| SmlI | CTYRAG | 2 cut(s) | 168, 904 |
| SmoI | CTYRAG | 2 cut(s) | 168, 904 |
| Sse9I | AATT | 6 cut(s) | 304, 372, 523, 529, 568, 788 |
| SsiI | CCGC | 3 cut(s) | 430, 601, 649 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 3 cut(s) | 15, 762, 875 |
| StyD4I | CCNGG | 3 cut(s) | 117, 129, 733 |
| StyI | CCWWGG | 1 cut(s) | 761 |
| TaaI | ACNGT | 2 cut(s) | 327, 899 |
| TaiI | ACGT | 4 cut(s) | 634, 694, 712, 781 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 823 |
| TasI | AATT | 6 cut(s) | 304, 372, 523, 529, 568, 788 |
| Tru1I | TTAA | 1 cut(s) | 791 |
| Tru9I | TTAA | 1 cut(s) | 791 |
| TscAI | CASTG | 2 cut(s) | 439, 904 |
| TseFI | GTSAC | 2 cut(s) | 355, 899 |
| TseI | GCWGC | 1 cut(s) | 1010 |
| Tsp45I | GTSAC | 2 cut(s) | 355, 899 |
| TspDTI | ATGAA | 4 cut(s) | 24, 455, 548, 1008 |
| TspGWI | ACGGA | 1 cut(s) | 466 |
| TspRI | CASTG | 2 cut(s) | 439, 904 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 711 |
| VneI | GTGCAC | 2 cut(s) | 780, 998 |
| XceI | RCATGY | 2 cut(s) | 167, 817 |
| XmaJI | CCTAGG | 1 cut(s) | 761 |
| XmnI | GAANNNNTTC | 1 cut(s) | 315 |
| XspI | CTAG | 3 cut(s) | 15, 762, 875 |