No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 53 - 153 | 3.1e-06 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AgsI | TTSAA | 5 cut(s) | 96, 170, 307, 314, 343 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 1 cut(s) | 247 |
| AluI | AGCT | 1 cut(s) | 247 |
| AlwI | GGATC | 1 cut(s) | 141 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AspLEI | GCGC | 3 cut(s) | 259, 270, 330 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BccI | CCATC | 1 cut(s) | 93 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BfaI | CTAG | 2 cut(s) | 15, 260 |
| BfoI | RGCGCY | 2 cut(s) | 260, 271 |
| Bme1390I | CCNGG | 1 cut(s) | 119 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| BmiI | GGNNCC | 1 cut(s) | 123 |
| BmrFI | CCNGG | 1 cut(s) | 119 |
| BmsI | GCATC | 2 cut(s) | 174, 226 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaWI | WCCGGW | 1 cut(s) | 130 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 209, 239 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseMII | CTCAG | 1 cut(s) | 223 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| Bsp143I | GATC | 2 cut(s) | 133, 228 |
| BspCNI | CTCAG | 1 cut(s) | 222 |
| BspLI | GGNNCC | 1 cut(s) | 123 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BssMI | GATC | 2 cut(s) | 133, 228 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 1 cut(s) | 62 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstDEI | CTNAG | 1 cut(s) | 209 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 271 |
| BstHHI | GCGC | 3 cut(s) | 259, 270, 330 |
| BstKTI | GATC | 2 cut(s) | 136, 231 |
| BstMBI | GATC | 2 cut(s) | 133, 228 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 265 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstSCI | CCNGG | 1 cut(s) | 117 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| CfoI | GCGC | 3 cut(s) | 259, 270, 330 |
| CseI | GACGC | 1 cut(s) | 198 |
| CviAII | CATG | 3 cut(s) | 31, 164, 388 |
| CviJI | RGCY | 4 cut(s) | 48, 247, 371, 464 |
| CviKI_1 | RGCY | 4 cut(s) | 48, 247, 371, 464 |
| DdeI | CTNAG | 1 cut(s) | 209 |
| DpnI | GATC | 2 cut(s) | 135, 230 |
| DpnII | GATC | 2 cut(s) | 133, 228 |
| DriI | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| FaeI | CATG | 3 cut(s) | 34, 167, 391 |
| FatI | CATG | 3 cut(s) | 30, 163, 387 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FokI | GGATG | 1 cut(s) | 248 |
| FspBI | CTAG | 2 cut(s) | 15, 260 |
| GlaI | GCGC | 3 cut(s) | 258, 269, 329 |
| HaeII | RGCGCY | 2 cut(s) | 260, 271 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 3 cut(s) | 259, 270, 330 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 3 cut(s) | 34, 167, 391 |
| Hin6I | GCGC | 3 cut(s) | 257, 268, 328 |
| HinP1I | GCGC | 3 cut(s) | 257, 268, 328 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 287 |
| HpaII | CCGG | 1 cut(s) | 131 |
| Hpy166II | GTNNAC | 1 cut(s) | 404 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 212, 367 |
| Hpy188III | TCNNGA | 1 cut(s) | 181 |
| Hpy8I | GTNNAC | 1 cut(s) | 404 |
| Hpy99I | CGWCG | 2 cut(s) | 77, 192 |
| HpyAV | CCTTC | 2 cut(s) | 301, 460 |
| HpyCH4III | ACNGT | 1 cut(s) | 62 |
| HpyCH4IV | ACGT | 1 cut(s) | 75 |
| HpyCH4V | TGCA | 1 cut(s) | 239 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 265 |
| HpyF3I | CTNAG | 1 cut(s) | 209 |
| HpySE526I | ACGT | 1 cut(s) | 75 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 3 cut(s) | 34, 167, 391 |
| HspAI | GCGC | 3 cut(s) | 257, 268, 328 |
| Kzo9I | GATC | 2 cut(s) | 133, 228 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LpnPI | CCDG | 6 cut(s) | 30, 104, 131, 144, 312, 423 |
| LweI | GCATC | 2 cut(s) | 174, 226 |
| MaeI | CTAG | 2 cut(s) | 15, 260 |
| MaeII | ACGT | 1 cut(s) | 75 |
| MaeIII | GTNAC | 1 cut(s) | 412 |
| MalI | GATC | 2 cut(s) | 135, 230 |
| MboI | GATC | 2 cut(s) | 133, 228 |
| MboII | GAAGA | 2 cut(s) | 275, 365 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MluCI | AATT | 2 cut(s) | 361, 429 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 3 cut(s) | 302, 305, 361 |
| MseI | TTAA | 1 cut(s) | 428 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 1 cut(s) | 119 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 265 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 2 cut(s) | 133, 228 |
| NlaIII | CATG | 3 cut(s) | 34, 167, 391 |
| NlaIV | GGNNCC | 1 cut(s) | 123 |
| NmuCI | GTSAC | 1 cut(s) | 412 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 1 cut(s) | 123 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SaqAI | TTAA | 1 cut(s) | 428 |
| Sau3AI | GATC | 2 cut(s) | 133, 228 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 1 cut(s) | 119 |
| SetI | ASST | 8 cut(s) | 16, 78, 127, 157, 249, 312, 412, 452 |
| SfaNI | GCATC | 2 cut(s) | 174, 226 |
| Sse9I | AATT | 2 cut(s) | 361, 429 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 2 cut(s) | 15, 260 |
| StyD4I | CCNGG | 1 cut(s) | 117 |
| TaaI | ACNGT | 1 cut(s) | 62 |
| TaiI | ACGT | 1 cut(s) | 78 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 227 |
| TasI | AATT | 2 cut(s) | 361, 429 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 1 cut(s) | 428 |
| Tru9I | TTAA | 1 cut(s) | 428 |
| TseFI | GTSAC | 1 cut(s) | 412 |
| Tsp45I | GTSAC | 1 cut(s) | 412 |
| TspDTI | ATGAA | 2 cut(s) | 24, 133 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XspI | CTAG | 2 cut(s) | 15, 260 |