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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 600 |
| AccB1I | GGYRCC | 1 cut(s) | 440 |
| AccII | CGCG | 1 cut(s) | 540 |
| AccIII | TCCGGA | 1 cut(s) | 520 |
| AciI | CCGC | 1 cut(s) | 634 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 259, 551, 622 |
| AflII | CTTAAG | 1 cut(s) | 88 |
| AflIII | ACRYGT | 2 cut(s) | 74, 670 |
| AgsI | TTSAA | 3 cut(s) | 13, 22, 166 |
| AluBI | AGCT | 5 cut(s) | 154, 178, 277, 433, 455 |
| AluI | AGCT | 5 cut(s) | 154, 178, 277, 433, 455 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| Aor13HI | TCCGGA | 1 cut(s) | 520 |
| ApeKI | GCWGC | 2 cut(s) | 154, 157 |
| AspLEI | GCGC | 1 cut(s) | 542 |
| AspS9I | GGNCC | 2 cut(s) | 67, 602 |
| AvaII | GGWCC | 2 cut(s) | 67, 602 |
| BanI | GGYRCC | 1 cut(s) | 440 |
| BbvI | GCAGC | 2 cut(s) | 141, 144 |
| BccI | CCATC | 3 cut(s) | 121, 212, 368 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 2 cut(s) | 51, 495 |
| BfmI | CTRYAG | 1 cut(s) | 532 |
| BfrI | CTTAAG | 1 cut(s) | 88 |
| BisI | GCNGC | 2 cut(s) | 155, 158 |
| BlsI | GCNGC | 2 cut(s) | 156, 159 |
| Bme18I | GGWCC | 2 cut(s) | 67, 602 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 602 |
| BmiI | GGNNCC | 5 cut(s) | 68, 442, 508, 656, 692 |
| BmsI | GCATC | 2 cut(s) | 304, 545 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| Bsa29I | ATCGAT | 1 cut(s) | 298 |
| BsaJI | CCNNGG | 3 cut(s) | 501, 658, 701 |
| BsaWI | WCCGGW | 1 cut(s) | 520 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 259, 551, 622 |
| Bse1I | ACTGG | 2 cut(s) | 39, 49 |
| BseAI | TCCGGA | 1 cut(s) | 520 |
| BseCI | ATCGAT | 1 cut(s) | 298 |
| BseDI | CCNNGG | 3 cut(s) | 501, 658, 701 |
| BseGI | GGATG | 2 cut(s) | 113, 560 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 259, 551, 622 |
| BseMII | CTCAG | 1 cut(s) | 447 |
| BseNI | ACTGG | 2 cut(s) | 39, 49 |
| BseRI | GAGGAG | 3 cut(s) | 134, 700, 703 |
| BseXI | GCAGC | 2 cut(s) | 141, 144 |
| BsgI | GTGCAG | 1 cut(s) | 351 |
| Bsh1236I | CGCG | 1 cut(s) | 540 |
| BshNI | GGYRCC | 1 cut(s) | 440 |
| BshVI | ATCGAT | 1 cut(s) | 298 |
| BsiSI | CCGG | 1 cut(s) | 521 |
| BslFI | GGGAC | 2 cut(s) | 236, 300 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 259, 551, 622 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsmFI | GGGAC | 2 cut(s) | 236, 300 |
| BsmI | GAATGC | 1 cut(s) | 409 |
| Bsp13I | TCCGGA | 1 cut(s) | 520 |
| Bsp143I | GATC | 1 cut(s) | 664 |
| Bsp19I | CCATGG | 1 cut(s) | 701 |
| BspACI | CCGC | 1 cut(s) | 634 |
| BspCNI | CTCAG | 1 cut(s) | 448 |
| BspDI | ATCGAT | 1 cut(s) | 298 |
| BspEI | TCCGGA | 1 cut(s) | 520 |
| BspFNI | CGCG | 1 cut(s) | 540 |
| BspHI | TCATGA | 2 cut(s) | 213, 427 |
| BspLI | GGNNCC | 5 cut(s) | 68, 442, 508, 656, 692 |
| BspT107I | GGYRCC | 1 cut(s) | 440 |
| BspTI | CTTAAG | 1 cut(s) | 88 |
| BsrI | ACTGG | 2 cut(s) | 39, 49 |
| BssECI | CCNNGG | 3 cut(s) | 501, 658, 701 |
| BssMI | GATC | 1 cut(s) | 664 |
| BssT1I | CCWWGG | 1 cut(s) | 701 |
| Bst4CI | ACNGT | 1 cut(s) | 659 |
| Bst6I | CTCTTC | 1 cut(s) | 671 |
| BstAFI | CTTAAG | 1 cut(s) | 88 |
| BstC8I | GCNNGC | 1 cut(s) | 648 |
| BstDEI | CTNAG | 3 cut(s) | 381, 456, 573 |
| BstDSI | CCRYGG | 3 cut(s) | 501, 658, 701 |
| BstF5I | GGATG | 2 cut(s) | 113, 560 |
| BstFNI | CGCG | 1 cut(s) | 540 |
| BstHHI | GCGC | 1 cut(s) | 542 |
| BstKTI | GATC | 1 cut(s) | 667 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 1 cut(s) | 664 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 166, 175 |
| BstNSI | RCATGY | 2 cut(s) | 138, 650 |
| BstSFI | CTRYAG | 1 cut(s) | 532 |
| BstUI | CGCG | 1 cut(s) | 540 |
| BstV1I | GCAGC | 2 cut(s) | 141, 144 |
| Bsu15I | ATCGAT | 1 cut(s) | 298 |
| BsuTUI | ATCGAT | 1 cut(s) | 298 |
| BtgI | CCRYGG | 3 cut(s) | 501, 658, 701 |
| BtsCI | GGATG | 2 cut(s) | 113, 560 |
| BtsIMutI | CAGTG | 2 cut(s) | 32, 368 |
| Cac8I | GCNNGC | 1 cut(s) | 648 |
| CciI | TCATGA | 2 cut(s) | 213, 427 |
| CfoI | GCGC | 1 cut(s) | 542 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 602 |
| ClaI | ATCGAT | 1 cut(s) | 298 |
| CviAII | CATG | 8 cut(s) | 135, 214, 226, 322, 428, 445, 647, 702 |
| DdeI | CTNAG | 3 cut(s) | 381, 456, 573 |
| DpnI | GATC | 1 cut(s) | 666 |
| DpnII | GATC | 1 cut(s) | 664 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 600 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 600 |
| Eam1104I | CTCTTC | 1 cut(s) | 671 |
| EarI | CTCTTC | 1 cut(s) | 671 |
| Eco130I | CCWWGG | 1 cut(s) | 701 |
| Eco47I | GGWCC | 2 cut(s) | 67, 602 |
| EcoT14I | CCWWGG | 1 cut(s) | 701 |
| ErhI | CCWWGG | 1 cut(s) | 701 |
| FaeI | CATG | 8 cut(s) | 138, 217, 229, 325, 431, 448, 650, 705 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 2 cut(s) | 236, 300 |
| FatI | CATG | 8 cut(s) | 134, 213, 225, 321, 427, 444, 646, 701 |
| Fnu4HI | GCNGC | 2 cut(s) | 155, 158 |
| FokI | GGATG | 2 cut(s) | 100, 567 |
| Fsp4HI | GCNGC | 2 cut(s) | 155, 158 |
| FspBI | CTAG | 2 cut(s) | 51, 495 |
| GlaI | GCGC | 1 cut(s) | 541 |
| GluI | GCNGC | 2 cut(s) | 155, 158 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HapII | CCGG | 1 cut(s) | 521 |
| HhaI | GCGC | 1 cut(s) | 542 |
| Hin1II | CATG | 8 cut(s) | 138, 217, 229, 325, 431, 448, 650, 705 |
| Hin6I | GCGC | 1 cut(s) | 540 |
| HinP1I | GCGC | 1 cut(s) | 540 |
| HinfI | GANTC | 3 cut(s) | 317, 343, 524 |
| HpaII | CCGG | 1 cut(s) | 521 |
| Hpy166II | GTNNAC | 1 cut(s) | 110 |
| Hpy188I | TCNGA | 3 cut(s) | 71, 393, 698 |
| Hpy188III | TCNNGA | 5 cut(s) | 130, 214, 314, 428, 521 |
| Hpy8I | GTNNAC | 1 cut(s) | 110 |
| HpyAV | CCTTC | 1 cut(s) | 364 |
| HpyCH4III | ACNGT | 1 cut(s) | 659 |
| HpyCH4IV | ACGT | 3 cut(s) | 74, 412, 670 |
| HpyCH4V | TGCA | 4 cut(s) | 368, 407, 558, 650 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 166, 175 |
| HpyF3I | CTNAG | 3 cut(s) | 381, 456, 573 |
| HpySE526I | ACGT | 3 cut(s) | 74, 412, 670 |
| Hsp92II | CATG | 8 cut(s) | 138, 217, 229, 325, 431, 448, 650, 705 |
| HspAI | GCGC | 1 cut(s) | 540 |
| Kpn2I | TCCGGA | 1 cut(s) | 520 |
| Kzo9I | GATC | 1 cut(s) | 664 |
| LmnI | GCTCC | 3 cut(s) | 243, 562, 690 |
| LpnPI | CCDG | 7 cut(s) | 20, 30, 115, 283, 393, 534, 585 |
| Lsp1109I | GCAGC | 2 cut(s) | 141, 144 |
| LweI | GCATC | 2 cut(s) | 304, 545 |
| MaeI | CTAG | 2 cut(s) | 51, 495 |
| MaeII | ACGT | 3 cut(s) | 74, 412, 670 |
| MaeIII | GTNAC | 2 cut(s) | 5, 314 |
| MalI | GATC | 1 cut(s) | 666 |
| MboI | GATC | 1 cut(s) | 664 |
| MboII | GAAGA | 2 cut(s) | 493, 688 |
| MluCI | AATT | 3 cut(s) | 331, 385, 586 |
| MlyI | GAGTC | 3 cut(s) | 311, 337, 533 |
| MroI | TCCGGA | 1 cut(s) | 520 |
| MseI | TTAA | 1 cut(s) | 89 |
| MslI | CAYNNNNRTG | 2 cut(s) | 212, 706 |
| MspCI | CTTAAG | 1 cut(s) | 88 |
| MspI | CCGG | 1 cut(s) | 521 |
| Mva1269I | GAATGC | 1 cut(s) | 409 |
| MvnI | CGCG | 1 cut(s) | 540 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 166, 175 |
| NcoI | CCATGG | 1 cut(s) | 701 |
| NdeII | GATC | 1 cut(s) | 664 |
| NlaIII | CATG | 8 cut(s) | 138, 217, 229, 325, 431, 448, 650, 705 |
| NlaIV | GGNNCC | 5 cut(s) | 68, 442, 508, 656, 692 |
| NmuCI | GTSAC | 1 cut(s) | 314 |
| NspI | RCATGY | 2 cut(s) | 138, 650 |
| PaeI | GCATGC | 1 cut(s) | 650 |
| PagI | TCATGA | 2 cut(s) | 213, 427 |
| PctI | GAATGC | 1 cut(s) | 409 |
| PkrI | GCNGC | 2 cut(s) | 156, 159 |
| PleI | GAGTC | 3 cut(s) | 311, 337, 532 |
| PpsI | GAGTC | 3 cut(s) | 311, 337, 532 |
| PspN4I | GGNNCC | 5 cut(s) | 68, 442, 508, 656, 692 |
| PspPI | GGNCC | 2 cut(s) | 67, 602 |
| RseI | CAYNNNNRTG | 2 cut(s) | 212, 706 |
| SaqAI | TTAA | 1 cut(s) | 89 |
| SatI | GCNGC | 2 cut(s) | 155, 158 |
| Sau3AI | GATC | 1 cut(s) | 664 |
| Sau96I | GGNCC | 2 cut(s) | 67, 602 |
| SchI | GAGTC | 3 cut(s) | 311, 337, 533 |
| SfaNI | GCATC | 2 cut(s) | 304, 545 |
| SfcI | CTRYAG | 1 cut(s) | 532 |
| SinI | GGWCC | 2 cut(s) | 67, 602 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 212, 706 |
| SmlI | CTYRAG | 2 cut(s) | 88, 290 |
| SmoI | CTYRAG | 2 cut(s) | 88, 290 |
| SphI | GCATGC | 1 cut(s) | 650 |
| Sse9I | AATT | 3 cut(s) | 331, 385, 586 |
| SsiI | CCGC | 1 cut(s) | 634 |
| SspMI | CTAG | 2 cut(s) | 51, 495 |
| StyI | CCWWGG | 1 cut(s) | 701 |
| TaaI | ACNGT | 1 cut(s) | 659 |
| TaiI | ACGT | 3 cut(s) | 77, 415, 673 |
| TaqI | TCGA | 1 cut(s) | 298 |
| TasI | AATT | 3 cut(s) | 331, 385, 586 |
| Tru1I | TTAA | 1 cut(s) | 89 |
| Tru9I | TTAA | 1 cut(s) | 89 |
| TscAI | CASTG | 2 cut(s) | 39, 375 |
| TseFI | GTSAC | 1 cut(s) | 314 |
| TseI | GCWGC | 2 cut(s) | 154, 157 |
| Tsp45I | GTSAC | 1 cut(s) | 314 |
| TspDTI | ATGAA | 5 cut(s) | 207, 242, 416, 416, 461 |
| TspGWI | ACGGA | 1 cut(s) | 667 |
| TspRI | CASTG | 2 cut(s) | 39, 375 |
| Vha464I | CTTAAG | 1 cut(s) | 88 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 602 |
| XceI | RCATGY | 2 cut(s) | 138, 650 |
| XspI | CTAG | 2 cut(s) | 51, 495 |