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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1092 |
| Acc36I | ACCTGC | 2 cut(s) | 807, 1092 |
| AccB1I | GGYRCC | 1 cut(s) | 575 |
| AccBSI | CCGCTC | 1 cut(s) | 944 |
| AccI | GTMKAC | 1 cut(s) | 549 |
| AccII | CGCG | 1 cut(s) | 627 |
| AclWI | GGATC | 6 cut(s) | 605, 662, 689, 725, 917, 1005 |
| AcoI | YGGCCR | 1 cut(s) | 866 |
| AcyI | GRCGYC | 2 cut(s) | 576, 947 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 967 |
| AflIII | ACRYGT | 1 cut(s) | 552 |
| AgsI | TTSAA | 2 cut(s) | 376, 511 |
| AjiI | CACGTC | 2 cut(s) | 136, 1078 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 288, 320, 423, 455 |
| AluBI | AGCT | 4 cut(s) | 155, 715, 741, 780 |
| AluI | AGCT | 4 cut(s) | 155, 715, 741, 780 |
| Alw26I | GTCTC | 4 cut(s) | 292, 427, 565, 1068 |
| AlwI | GGATC | 6 cut(s) | 605, 662, 689, 725, 917, 1005 |
| Ama87I | CYCGRG | 3 cut(s) | 119, 837, 1095 |
| AoxI | GGCC | 2 cut(s) | 677, 866 |
| ApeKI | GCWGC | 5 cut(s) | 179, 715, 720, 741, 957 |
| AspLEI | GCGC | 4 cut(s) | 578, 629, 720, 746 |
| AspS9I | GGNCC | 2 cut(s) | 605, 678 |
| AsuC2I | CCSGG | 1 cut(s) | 818 |
| AsuHPI | GGTGA | 2 cut(s) | 578, 928 |
| AvaI | CYCGRG | 3 cut(s) | 119, 837, 1095 |
| AvaII | GGWCC | 1 cut(s) | 605 |
| BanI | GGYRCC | 1 cut(s) | 575 |
| BauI | CACGAG | 1 cut(s) | 618 |
| BbsI | GAAGAC | 2 cut(s) | 273, 408 |
| BbvI | GCAGC | 5 cut(s) | 191, 702, 707, 728, 969 |
| BccI | CCATC | 9 cut(s) | 215, 342, 477, 679, 851, 857, 996, 1004, 1075 |
| BceAI | ACGGC | 2 cut(s) | 563, 881 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BcnI | CCSGG | 1 cut(s) | 818 |
| BcoDI | GTCTC | 4 cut(s) | 292, 427, 565, 1068 |
| BfaI | CTAG | 6 cut(s) | 126, 338, 473, 639, 989, 1007 |
| BfmI | CTRYAG | 2 cut(s) | 598, 688 |
| BfoI | RGCGCY | 1 cut(s) | 579 |
| BfuAI | ACCTGC | 2 cut(s) | 807, 1092 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 7 cut(s) | 180, 648, 716, 721, 742, 945, 958 |
| BlsI | GCNGC | 7 cut(s) | 181, 649, 717, 722, 743, 946, 959 |
| Bme1390I | CCNGG | 3 cut(s) | 107, 131, 818 |
| Bme18I | GGWCC | 1 cut(s) | 605 |
| BmeT110I | CYCGRG | 3 cut(s) | 119, 837, 1095 |
| BmgBI | CACGTC | 2 cut(s) | 136, 1078 |
| BmgT120I | GGNCC | 2 cut(s) | 605, 678 |
| BmiI | GGNNCC | 3 cut(s) | 577, 607, 680 |
| BmrFI | CCNGG | 3 cut(s) | 107, 131, 818 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 273, 408 |
| BpmI | CTGGAG | 2 cut(s) | 227, 648 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BpuMI | CCSGG | 1 cut(s) | 818 |
| Bsa29I | ATCGAT | 1 cut(s) | 1000 |
| BsaBI | GATNNNNATC | 2 cut(s) | 510, 996 |
| BsaHI | GRCGYC | 2 cut(s) | 576, 947 |
| BsaI | GGTCTC | 2 cut(s) | 292, 427 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 967 |
| Bse118I | RCCGGY | 1 cut(s) | 1053 |
| Bse1I | ACTGG | 3 cut(s) | 49, 244, 961 |
| Bse3DI | GCAATG | 1 cut(s) | 869 |
| Bse8I | GATNNNNATC | 2 cut(s) | 510, 996 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseCI | ATCGAT | 1 cut(s) | 1000 |
| BseGI | GGATG | 6 cut(s) | 210, 238, 529, 843, 849, 1024 |
| BseJI | GATNNNNATC | 2 cut(s) | 510, 996 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 967 |
| BseMI | GCAATG | 1 cut(s) | 869 |
| BseNI | ACTGG | 3 cut(s) | 49, 244, 961 |
| BseXI | GCAGC | 5 cut(s) | 191, 702, 707, 728, 969 |
| BseYI | CCCAGC | 2 cut(s) | 905, 975 |
| BsgI | GTGCAG | 1 cut(s) | 548 |
| Bsh1236I | CGCG | 1 cut(s) | 627 |
| BshFI | GGCC | 2 cut(s) | 679, 868 |
| BshNI | GGYRCC | 1 cut(s) | 575 |
| BshVI | ATCGAT | 1 cut(s) | 1000 |
| BsiHKCI | CYCGRG | 3 cut(s) | 119, 837, 1095 |
| BsiSI | CCGG | 2 cut(s) | 818, 1054 |
| BslFI | GGGAC | 1 cut(s) | 591 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 967 |
| BsmAI | GTCTC | 4 cut(s) | 292, 427, 565, 1068 |
| BsmBI | CGTCTC | 2 cut(s) | 565, 1068 |
| BsmFI | GGGAC | 1 cut(s) | 591 |
| BsnI | GGCC | 2 cut(s) | 679, 868 |
| Bso31I | GGTCTC | 2 cut(s) | 292, 427 |
| BsoBI | CYCGRG | 3 cut(s) | 119, 837, 1095 |
| Bsp143I | GATC | 9 cut(s) | 583, 610, 622, 657, 667, 694, 730, 909, 997 |
| BspANI | GGCC | 2 cut(s) | 679, 868 |
| BspDI | ATCGAT | 1 cut(s) | 1000 |
| BspFNI | CGCG | 1 cut(s) | 627 |
| BspLI | GGNNCC | 3 cut(s) | 577, 607, 680 |
| BspMI | ACCTGC | 2 cut(s) | 807, 1092 |
| BspPI | GGATC | 6 cut(s) | 605, 662, 689, 725, 917, 1005 |
| BspT107I | GGYRCC | 1 cut(s) | 575 |
| BspTNI | GGTCTC | 2 cut(s) | 292, 427 |
| BsrBI | CCGCTC | 1 cut(s) | 944 |
| BsrDI | GCAATG | 1 cut(s) | 869 |
| BsrFI | RCCGGY | 1 cut(s) | 1053 |
| BsrI | ACTGG | 3 cut(s) | 49, 244, 961 |
| BssAI | RCCGGY | 1 cut(s) | 1053 |
| BssMI | GATC | 9 cut(s) | 583, 610, 622, 657, 667, 694, 730, 909, 997 |
| BssNI | GRCGYC | 2 cut(s) | 576, 947 |
| BssSI | CACGAG | 1 cut(s) | 618 |
| Bst2BI | CACGAG | 1 cut(s) | 618 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 4 cut(s) | 145, 770, 1039, 1067 |
| BstACI | GRCGYC | 2 cut(s) | 576, 947 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 1051 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 6 cut(s) | 210, 238, 529, 843, 849, 1024 |
| BstFNI | CGCG | 1 cut(s) | 627 |
| BstH2I | RGCGCY | 1 cut(s) | 579 |
| BstHHI | GCGC | 4 cut(s) | 578, 629, 720, 746 |
| BstKTI | GATC | 9 cut(s) | 586, 613, 625, 660, 670, 697, 733, 912, 1000 |
| BstMAI | GTCTC | 4 cut(s) | 292, 427, 565, 1068 |
| BstMBI | GATC | 9 cut(s) | 583, 610, 622, 657, 667, 694, 730, 909, 997 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 690 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstNSI | RCATGY | 1 cut(s) | 556 |
| BstSCI | CCNGG | 3 cut(s) | 105, 129, 816 |
| BstSFI | CTRYAG | 2 cut(s) | 598, 688 |
| BstUI | CGCG | 1 cut(s) | 627 |
| BstV1I | GCAGC | 5 cut(s) | 191, 702, 707, 728, 969 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 408 |
| BstX2I | RGATCY | 1 cut(s) | 667 |
| BstYI | RGATCY | 1 cut(s) | 667 |
| Bsu15I | ATCGAT | 1 cut(s) | 1000 |
| BsuRI | GGCC | 2 cut(s) | 679, 868 |
| BsuTUI | ATCGAT | 1 cut(s) | 1000 |
| BtrI | CACGTC | 2 cut(s) | 136, 1078 |
| BtsCI | GGATG | 6 cut(s) | 210, 238, 529, 843, 849, 1024 |
| BtsIMutI | CAGTG | 1 cut(s) | 968 |
| BveI | ACCTGC | 2 cut(s) | 807, 1092 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 1051 |
| CfoI | GCGC | 4 cut(s) | 578, 629, 720, 746 |
| Cfr10I | RCCGGY | 1 cut(s) | 1053 |
| Cfr13I | GGNCC | 2 cut(s) | 605, 678 |
| ClaI | ATCGAT | 1 cut(s) | 1000 |
| CseI | GACGC | 1 cut(s) | 936 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 754, 789 |
| CviAII | CATG | 3 cut(s) | 553, 655, 675 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| DinI | GGCGCC | 1 cut(s) | 577 |
| DpnI | GATC | 9 cut(s) | 585, 612, 624, 659, 669, 696, 732, 911, 999 |
| DpnII | GATC | 9 cut(s) | 583, 610, 622, 657, 667, 694, 730, 909, 997 |
| EaeI | YGGCCR | 1 cut(s) | 866 |
| EciI | GGCGGA | 2 cut(s) | 68, 1086 |
| Eco31I | GGTCTC | 2 cut(s) | 292, 427 |
| Eco32I | GATATC | 2 cut(s) | 56, 76 |
| Eco47I | GGWCC | 1 cut(s) | 605 |
| Eco88I | CYCGRG | 3 cut(s) | 119, 837, 1095 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 2 cut(s) | 56, 76 |
| EgeI | GGCGCC | 1 cut(s) | 577 |
| EheI | GGCGCC | 1 cut(s) | 577 |
| Esp3I | CGTCTC | 2 cut(s) | 565, 1068 |
| FaeI | CATG | 3 cut(s) | 556, 658, 678 |
| FaqI | GGGAC | 1 cut(s) | 591 |
| FatI | CATG | 3 cut(s) | 552, 654, 674 |
| FauI | CCCGC | 1 cut(s) | 689 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FblI | GTMKAC | 1 cut(s) | 549 |
| Fnu4HI | GCNGC | 7 cut(s) | 180, 648, 716, 721, 742, 945, 958 |
| FokI | GGATG | 6 cut(s) | 197, 245, 536, 830, 836, 1031 |
| Fsp4HI | GCNGC | 7 cut(s) | 180, 648, 716, 721, 742, 945, 958 |
| FspBI | CTAG | 6 cut(s) | 126, 338, 473, 639, 989, 1007 |
| GlaI | GCGC | 4 cut(s) | 577, 628, 719, 745 |
| GluI | GCNGC | 7 cut(s) | 180, 648, 716, 721, 742, 945, 958 |
| GsaI | CCCAGC | 2 cut(s) | 909, 979 |
| GsuI | CTGGAG | 2 cut(s) | 227, 648 |
| HaeII | RGCGCY | 1 cut(s) | 579 |
| HaeIII | GGCC | 2 cut(s) | 679, 868 |
| HapII | CCGG | 2 cut(s) | 818, 1054 |
| HgaI | GACGC | 1 cut(s) | 936 |
| HhaI | GCGC | 4 cut(s) | 578, 629, 720, 746 |
| Hin1I | GRCGYC | 2 cut(s) | 576, 947 |
| Hin1II | CATG | 3 cut(s) | 556, 658, 678 |
| Hin6I | GCGC | 4 cut(s) | 576, 627, 718, 744 |
| HinP1I | GCGC | 4 cut(s) | 576, 627, 718, 744 |
| HinfI | GANTC | 9 cut(s) | 102, 115, 220, 236, 320, 455, 565, 821, 1093 |
| HpaII | CCGG | 2 cut(s) | 818, 1054 |
| HphI | GGTGA | 2 cut(s) | 578, 928 |
| Hpy166II | GTNNAC | 1 cut(s) | 550 |
| Hpy188I | TCNGA | 4 cut(s) | 730, 784, 941, 1063 |
| Hpy8I | GTNNAC | 1 cut(s) | 550 |
| Hpy99I | CGWCG | 1 cut(s) | 584 |
| HpyAV | CCTTC | 6 cut(s) | 270, 405, 566, 850, 961, 1016 |
| HpyCH4III | ACNGT | 4 cut(s) | 145, 770, 1039, 1067 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 312, 447, 1077 |
| HpyCH4V | TGCA | 2 cut(s) | 529, 802 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 690 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| HpySE526I | ACGT | 4 cut(s) | 135, 312, 447, 1077 |
| Hsp92I | GRCGYC | 2 cut(s) | 576, 947 |
| Hsp92II | CATG | 3 cut(s) | 556, 658, 678 |
| HspAI | GCGC | 4 cut(s) | 576, 627, 718, 744 |
| KasI | GGCGCC | 1 cut(s) | 575 |
| Kzo9I | GATC | 9 cut(s) | 583, 610, 622, 657, 667, 694, 730, 909, 997 |
| LmnI | GCTCC | 4 cut(s) | 34, 246, 667, 941 |
| Lsp1109I | GCAGC | 5 cut(s) | 191, 702, 707, 728, 969 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 6 cut(s) | 126, 338, 473, 639, 989, 1007 |
| MaeII | ACGT | 4 cut(s) | 135, 312, 447, 1077 |
| MaeIII | GTNAC | 3 cut(s) | 5, 317, 452 |
| MalI | GATC | 9 cut(s) | 585, 612, 624, 659, 669, 696, 732, 911, 999 |
| MbiI | CCGCTC | 1 cut(s) | 944 |
| MboI | GATC | 9 cut(s) | 583, 610, 622, 657, 667, 694, 730, 909, 997 |
| MboII | GAAGA | 6 cut(s) | 275, 278, 308, 410, 413, 443 |
| MflI | RGATCY | 1 cut(s) | 667 |
| MluCI | AATT | 1 cut(s) | 17 |
| Mly113I | GGCGCC | 1 cut(s) | 576 |
| MlyI | GAGTC | 5 cut(s) | 214, 314, 449, 815, 1087 |
| MmeI | TCCRAC | 1 cut(s) | 919 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspI | CCGG | 2 cut(s) | 818, 1054 |
| MspR9I | CCNGG | 3 cut(s) | 107, 131, 818 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MvnI | CGCG | 1 cut(s) | 627 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 690 |
| NarI | GGCGCC | 1 cut(s) | 576 |
| NciI | CCSGG | 1 cut(s) | 818 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 9 cut(s) | 583, 610, 622, 657, 667, 694, 730, 909, 997 |
| NlaIII | CATG | 3 cut(s) | 556, 658, 678 |
| NlaIV | GGNNCC | 3 cut(s) | 577, 607, 680 |
| NmuCI | GTSAC | 2 cut(s) | 317, 452 |
| NspI | RCATGY | 1 cut(s) | 556 |
| PaeR7I | CTCGAG | 3 cut(s) | 119, 837, 1095 |
| PaqCI | CACCTGC | 1 cut(s) | 1092 |
| PciI | ACATGT | 1 cut(s) | 552 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 565 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 7 cut(s) | 181, 649, 717, 722, 743, 946, 959 |
| PleI | GAGTC | 5 cut(s) | 214, 314, 449, 815, 1087 |
| PluTI | GGCGCC | 1 cut(s) | 579 |
| PpsI | GAGTC | 5 cut(s) | 214, 314, 449, 815, 1087 |
| PscI | ACATGT | 1 cut(s) | 552 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspFI | CCCAGC | 2 cut(s) | 905, 975 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PspN4I | GGNNCC | 3 cut(s) | 577, 607, 680 |
| PspPI | GGNCC | 2 cut(s) | 605, 678 |
| PspXI | VCTCGAGB | 2 cut(s) | 837, 1095 |
| PsuI | RGATCY | 1 cut(s) | 667 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SatI | GCNGC | 7 cut(s) | 180, 648, 716, 721, 742, 945, 958 |
| Sau3AI | GATC | 9 cut(s) | 583, 610, 622, 657, 667, 694, 730, 909, 997 |
| Sau96I | GGNCC | 2 cut(s) | 605, 678 |
| SchI | GAGTC | 5 cut(s) | 214, 314, 449, 815, 1087 |
| ScrFI | CCNGG | 3 cut(s) | 107, 131, 818 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 2 cut(s) | 598, 688 |
| SfoI | GGCGCC | 1 cut(s) | 577 |
| Sfr274I | CTCGAG | 3 cut(s) | 119, 837, 1095 |
| SinI | GGWCC | 1 cut(s) | 605 |
| SlaI | CTCGAG | 3 cut(s) | 119, 837, 1095 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 837, 1095 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 837, 1095 |
| Sse9I | AATT | 1 cut(s) | 17 |
| SspDI | GGCGCC | 1 cut(s) | 575 |
| SspMI | CTAG | 6 cut(s) | 126, 338, 473, 639, 989, 1007 |
| StyD4I | CCNGG | 3 cut(s) | 105, 129, 816 |
| TaaI | ACNGT | 4 cut(s) | 145, 770, 1039, 1067 |
| TaiI | ACGT | 4 cut(s) | 138, 315, 450, 1080 |
| TasI | AATT | 1 cut(s) | 17 |
| TauI | GCSGC | 2 cut(s) | 650, 947 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 565 |
| TscAI | CASTG | 1 cut(s) | 968 |
| TseFI | GTSAC | 2 cut(s) | 317, 452 |
| TseI | GCWGC | 5 cut(s) | 179, 715, 720, 741, 957 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 452 |
| TspDTI | ATGAA | 5 cut(s) | 272, 276, 407, 411, 1035 |
| TspGWI | ACGGA | 3 cut(s) | 305, 440, 1010 |
| TspRI | CASTG | 1 cut(s) | 968 |
| VpaK11BI | GGWCC | 1 cut(s) | 605 |
| XceI | RCATGY | 1 cut(s) | 556 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 599, 672 |
| XhoI | CTCGAG | 3 cut(s) | 119, 837, 1095 |
| XmiI | GTMKAC | 1 cut(s) | 549 |
| XspI | CTAG | 6 cut(s) | 126, 338, 473, 639, 989, 1007 |