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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 557 |
| AccII | CGCG | 1 cut(s) | 239 |
| AclI | AACGTT | 1 cut(s) | 312 |
| AclWI | GGATC | 3 cut(s) | 97, 109, 110 |
| AcsI | RAATTY | 1 cut(s) | 416 |
| AfaI | GTAC | 2 cut(s) | 112, 384 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 262 |
| AgsI | TTSAA | 2 cut(s) | 167, 376 |
| AleI | CACNNNNGTG | 1 cut(s) | 231 |
| AluBI | AGCT | 5 cut(s) | 24, 155, 179, 200, 550 |
| AluI | AGCT | 5 cut(s) | 24, 155, 179, 200, 550 |
| Alw26I | GTCTC | 2 cut(s) | 32, 484 |
| AlwI | GGATC | 3 cut(s) | 97, 109, 110 |
| Ama87I | CYCGRG | 1 cut(s) | 293 |
| ApoI | RAATTY | 1 cut(s) | 416 |
| AspLEI | GCGC | 2 cut(s) | 81, 241 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AvaI | CYCGRG | 1 cut(s) | 293 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 557 |
| BbsI | GAAGAC | 2 cut(s) | 273, 464 |
| BccI | CCATC | 3 cut(s) | 92, 342, 406 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 484 |
| BfaI | CTAG | 1 cut(s) | 35 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmeT110I | CYCGRG | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 3 cut(s) | 68, 104, 559 |
| BmsI | GCATC | 1 cut(s) | 540 |
| BpiI | GAAGAC | 2 cut(s) | 273, 464 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaBI | GATNNNNATC | 1 cut(s) | 449 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 262 |
| Bse8I | GATNNNNATC | 1 cut(s) | 449 |
| BseJI | GATNNNNATC | 1 cut(s) | 449 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 262 |
| BseMII | CTCAG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| Bsh1236I | CGCG | 1 cut(s) | 239 |
| BshNI | GGYRCC | 1 cut(s) | 557 |
| BsiHKCI | CYCGRG | 1 cut(s) | 293 |
| BsiSI | CCGG | 1 cut(s) | 525 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 262 |
| BsmAI | GTCTC | 2 cut(s) | 32, 484 |
| BsmBI | CGTCTC | 1 cut(s) | 484 |
| BsoBI | CYCGRG | 1 cut(s) | 293 |
| Bsp143I | GATC | 3 cut(s) | 102, 114, 450 |
| BspCNI | CTCAG | 1 cut(s) | 99 |
| BspFNI | CGCG | 1 cut(s) | 239 |
| BspHI | TCATGA | 2 cut(s) | 216, 544 |
| BspLI | GGNNCC | 3 cut(s) | 68, 104, 559 |
| BspPI | GGATC | 3 cut(s) | 97, 109, 110 |
| BspT107I | GGYRCC | 1 cut(s) | 557 |
| BssMI | GATC | 3 cut(s) | 102, 114, 450 |
| Bst4CI | ACNGT | 1 cut(s) | 282 |
| BstDEI | CTNAG | 2 cut(s) | 107, 337 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 260 |
| BstFNI | CGCG | 1 cut(s) | 239 |
| BstHHI | GCGC | 2 cut(s) | 81, 241 |
| BstKTI | GATC | 3 cut(s) | 105, 117, 453 |
| BstMAI | GTCTC | 2 cut(s) | 32, 484 |
| BstMBI | GATC | 3 cut(s) | 102, 114, 450 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| BstNSI | RCATGY | 1 cut(s) | 48 |
| BstUI | CGCG | 1 cut(s) | 239 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 464 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 568 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| CciI | TCATGA | 2 cut(s) | 216, 544 |
| CfoI | GCGC | 2 cut(s) | 81, 241 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 2 cut(s) | 245, 537 |
| Csp6I | GTAC | 2 cut(s) | 111, 383 |
| CviAII | CATG | 5 cut(s) | 45, 217, 229, 545, 562 |
| CviQI | GTAC | 2 cut(s) | 111, 383 |
| DdeI | CTNAG | 2 cut(s) | 107, 337 |
| DpnI | GATC | 3 cut(s) | 104, 116, 452 |
| DpnII | GATC | 3 cut(s) | 102, 114, 450 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco88I | CYCGRG | 1 cut(s) | 293 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 260 |
| EcoRI | GAATTC | 1 cut(s) | 416 |
| Esp3I | CGTCTC | 1 cut(s) | 484 |
| FaeI | CATG | 5 cut(s) | 48, 220, 232, 548, 565 |
| FaiI | YATR | 9 cut(s) | 46, 209, 218, 230, 354, 399, 546, 563, 589 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 5 cut(s) | 44, 216, 228, 544, 561 |
| FspBI | CTAG | 1 cut(s) | 35 |
| GlaI | GCGC | 2 cut(s) | 80, 240 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HapII | CCGG | 1 cut(s) | 525 |
| HgaI | GACGC | 2 cut(s) | 245, 537 |
| HhaI | GCGC | 2 cut(s) | 81, 241 |
| Hin1II | CATG | 5 cut(s) | 48, 220, 232, 548, 565 |
| Hin6I | GCGC | 2 cut(s) | 79, 239 |
| HinP1I | GCGC | 2 cut(s) | 79, 239 |
| HinfI | GANTC | 2 cut(s) | 320, 460 |
| HpaII | CCGG | 1 cut(s) | 525 |
| Hpy188III | TCNNGA | 6 cut(s) | 106, 217, 244, 332, 454, 545 |
| HpyAV | CCTTC | 1 cut(s) | 481 |
| HpyCH4III | ACNGT | 1 cut(s) | 282 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 567 |
| HpyCH4V | TGCA | 2 cut(s) | 48, 485 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 107, 337 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 567 |
| Hsp92II | CATG | 5 cut(s) | 48, 220, 232, 548, 565 |
| HspAI | GCGC | 2 cut(s) | 79, 239 |
| Kzo9I | GATC | 3 cut(s) | 102, 114, 450 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| LpnPI | CCDG | 6 cut(s) | 36, 119, 257, 338, 345, 538 |
| LweI | GCATC | 1 cut(s) | 540 |
| MaeI | CTAG | 1 cut(s) | 35 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 567 |
| MaeIII | GTNAC | 3 cut(s) | 5, 233, 317 |
| MalI | GATC | 3 cut(s) | 104, 116, 452 |
| MboI | GATC | 3 cut(s) | 102, 114, 450 |
| MboII | GAAGA | 2 cut(s) | 278, 469 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MluCI | AATT | 4 cut(s) | 210, 416, 432, 510 |
| MlyI | GAGTC | 2 cut(s) | 314, 454 |
| MnlI | CCTC | 5 cut(s) | 156, 181, 256, 266, 368 |
| MseI | TTAA | 1 cut(s) | 12 |
| MslI | CAYNNNNRTG | 3 cut(s) | 231, 566, 592 |
| MspI | CCGG | 1 cut(s) | 525 |
| MvnI | CGCG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| NdeII | GATC | 3 cut(s) | 102, 114, 450 |
| NlaIII | CATG | 5 cut(s) | 48, 220, 232, 548, 565 |
| NlaIV | GGNNCC | 3 cut(s) | 68, 104, 559 |
| NmuCI | GTSAC | 2 cut(s) | 233, 317 |
| NspI | RCATGY | 1 cut(s) | 48 |
| OliI | CACNNNNGTG | 1 cut(s) | 231 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PagI | TCATGA | 2 cut(s) | 216, 544 |
| PleI | GAGTC | 2 cut(s) | 314, 454 |
| PpsI | GAGTC | 2 cut(s) | 314, 454 |
| Psp1406I | AACGTT | 1 cut(s) | 312 |
| PspN4I | GGNNCC | 3 cut(s) | 68, 104, 559 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| RsaI | GTAC | 2 cut(s) | 112, 384 |
| RsaNI | GTAC | 2 cut(s) | 111, 383 |
| RseI | CAYNNNNRTG | 3 cut(s) | 231, 566, 592 |
| SaqAI | TTAA | 1 cut(s) | 12 |
| Sau3AI | GATC | 3 cut(s) | 102, 114, 450 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 2 cut(s) | 314, 454 |
| SfaNI | GCATC | 1 cut(s) | 540 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 231, 566, 592 |
| SmlI | CTYRAG | 2 cut(s) | 89, 293 |
| SmoI | CTYRAG | 2 cut(s) | 89, 293 |
| Sse9I | AATT | 4 cut(s) | 210, 416, 432, 510 |
| SspMI | CTAG | 1 cut(s) | 35 |
| TaaI | ACNGT | 1 cut(s) | 282 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 570 |
| TaqI | TCGA | 3 cut(s) | 294, 453, 508 |
| TasI | AATT | 4 cut(s) | 210, 416, 432, 510 |
| TatI | WGTACW | 1 cut(s) | 382 |
| Tru1I | TTAA | 1 cut(s) | 12 |
| Tru9I | TTAA | 1 cut(s) | 12 |
| TseFI | GTSAC | 2 cut(s) | 233, 317 |
| Tsp45I | GTSAC | 2 cut(s) | 233, 317 |
| TspDTI | ATGAA | 5 cut(s) | 210, 264, 386, 533, 578 |
| TspGWI | ACGGA | 3 cut(s) | 59, 350, 466 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 260 |
| XapI | RAATTY | 1 cut(s) | 416 |
| XceI | RCATGY | 1 cut(s) | 48 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 279 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| XspI | CTAG | 1 cut(s) | 35 |