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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1140 |
| AccI | GTMKAC | 1 cut(s) | 517 |
| AccII | CGCG | 1 cut(s) | 1146 |
| AccIII | TCCGGA | 2 cut(s) | 457, 1126 |
| AciI | CCGC | 8 cut(s) | 289, 292, 354, 393, 396, 437, 645, 717 |
| AclWI | GGATC | 6 cut(s) | 252, 326, 488, 655, 667, 668 |
| AcoI | YGGCCR | 2 cut(s) | 445, 485 |
| AcsI | RAATTY | 2 cut(s) | 307, 905 |
| AfaI | GTAC | 4 cut(s) | 135, 812, 861, 882 |
| AfeI | AGCGCT | 1 cut(s) | 1163 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 249, 331 |
| AgsI | TTSAA | 2 cut(s) | 407, 853 |
| AjnI | CCWGG | 1 cut(s) | 324 |
| AluBI | AGCT | 7 cut(s) | 410, 512, 713, 737, 758, 1039, 1061 |
| AluI | AGCT | 7 cut(s) | 410, 512, 713, 737, 758, 1039, 1061 |
| Alw26I | GTCTC | 2 cut(s) | 247, 279 |
| AlwI | GGATC | 6 cut(s) | 252, 326, 488, 655, 667, 668 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 533 |
| Aor13HI | TCCGGA | 2 cut(s) | 457, 1126 |
| Aor51HI | AGCGCT | 1 cut(s) | 1163 |
| AoxI | GGCC | 4 cut(s) | 445, 485, 589, 747 |
| ApeKI | GCWGC | 4 cut(s) | 193, 542, 619, 713 |
| ApoI | RAATTY | 2 cut(s) | 307, 905 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 882 |
| AspLEI | GCGC | 3 cut(s) | 198, 1148, 1164 |
| AspS9I | GGNCC | 2 cut(s) | 164, 590 |
| AsuHPI | GGTGA | 4 cut(s) | 102, 107, 116, 136 |
| AvaII | GGWCC | 1 cut(s) | 164 |
| BamHI | GGATCC | 1 cut(s) | 660 |
| BbsI | GAAGAC | 1 cut(s) | 953 |
| BbvI | GCAGC | 4 cut(s) | 205, 529, 631, 700 |
| BccI | CCATC | 3 cut(s) | 650, 819, 895 |
| BceAI | ACGGC | 2 cut(s) | 43, 452 |
| BciT130I | CCWGG | 1 cut(s) | 326 |
| BcoDI | GTCTC | 2 cut(s) | 247, 279 |
| BfaI | CTAG | 6 cut(s) | 62, 221, 509, 665, 1101, 1165 |
| BfoI | RGCGCY | 2 cut(s) | 199, 1165 |
| BisI | GCNGC | 7 cut(s) | 194, 292, 396, 543, 620, 714, 717 |
| BlsI | GCNGC | 7 cut(s) | 195, 293, 397, 544, 621, 715, 718 |
| BmcAI | AGTACT | 1 cut(s) | 882 |
| Bme1390I | CCNGG | 1 cut(s) | 326 |
| Bme18I | GGWCC | 1 cut(s) | 164 |
| BmgT120I | GGNCC | 2 cut(s) | 164, 590 |
| BmiI | GGNNCC | 3 cut(s) | 442, 662, 1048 |
| BmrFI | CCNGG | 1 cut(s) | 326 |
| BmsI | GCATC | 2 cut(s) | 545, 1029 |
| BpiI | GAAGAC | 1 cut(s) | 953 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 123, 155 |
| BpmI | CTGGAG | 1 cut(s) | 785 |
| BsaBI | GATNNNNATC | 1 cut(s) | 938 |
| BsaI | GGTCTC | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 1 cut(s) | 202 |
| BsaWI | WCCGGW | 2 cut(s) | 457, 1126 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 201, 231 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 249, 331 |
| Bse118I | RCCGGY | 2 cut(s) | 443, 483 |
| Bse8I | GATNNNNATC | 1 cut(s) | 938 |
| BseAI | TCCGGA | 2 cut(s) | 457, 1126 |
| BseBI | CCWGG | 1 cut(s) | 326 |
| BseDI | CCNNGG | 1 cut(s) | 202 |
| BseGI | GGATG | 1 cut(s) | 503 |
| BseJI | GATNNNNATC | 1 cut(s) | 938 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 249, 331 |
| BseRI | GAGGAG | 3 cut(s) | 222, 265, 693 |
| BseXI | GCAGC | 4 cut(s) | 205, 529, 631, 700 |
| BsgI | GTGCAG | 1 cut(s) | 166 |
| Bsh1236I | CGCG | 1 cut(s) | 1146 |
| BshFI | GGCC | 4 cut(s) | 447, 487, 591, 749 |
| BsiSI | CCGG | 6 cut(s) | 282, 345, 444, 458, 484, 1127 |
| BslFI | GGGAC | 1 cut(s) | 250 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 249, 331 |
| BsmAI | GTCTC | 2 cut(s) | 247, 279 |
| BsmBI | CGTCTC | 1 cut(s) | 247 |
| BsmFI | GGGAC | 1 cut(s) | 250 |
| BsnI | GGCC | 4 cut(s) | 447, 487, 591, 749 |
| Bso31I | GGTCTC | 1 cut(s) | 279 |
| Bsp13I | TCCGGA | 2 cut(s) | 457, 1126 |
| Bsp143I | GATC | 6 cut(s) | 257, 318, 493, 660, 672, 939 |
| BspACI | CCGC | 8 cut(s) | 289, 292, 354, 393, 396, 437, 645, 717 |
| BspANI | GGCC | 4 cut(s) | 447, 487, 591, 749 |
| BspEI | TCCGGA | 2 cut(s) | 457, 1126 |
| BspFNI | CGCG | 1 cut(s) | 1146 |
| BspHI | TCATGA | 2 cut(s) | 774, 1033 |
| BspLI | GGNNCC | 3 cut(s) | 442, 662, 1048 |
| BspPI | GGATC | 6 cut(s) | 252, 326, 488, 655, 667, 668 |
| BspTNI | GGTCTC | 1 cut(s) | 279 |
| BsrFI | RCCGGY | 2 cut(s) | 443, 483 |
| BssAI | RCCGGY | 2 cut(s) | 443, 483 |
| BssECI | CCNNGG | 1 cut(s) | 202 |
| BssMI | GATC | 6 cut(s) | 257, 318, 493, 660, 672, 939 |
| Bst2UI | CCWGG | 1 cut(s) | 326 |
| Bst4CI | ACNGT | 1 cut(s) | 187 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 542 |
| BstC8I | GCNNGC | 2 cut(s) | 528, 645 |
| BstDSI | CCRYGG | 1 cut(s) | 202 |
| BstF5I | GGATG | 1 cut(s) | 503 |
| BstFNI | CGCG | 1 cut(s) | 1146 |
| BstH2I | RGCGCY | 2 cut(s) | 199, 1165 |
| BstHHI | GCGC | 3 cut(s) | 198, 1148, 1164 |
| BstKTI | GATC | 6 cut(s) | 260, 321, 496, 663, 675, 942 |
| BstMAI | GTCTC | 2 cut(s) | 247, 279 |
| BstMBI | GATC | 6 cut(s) | 257, 318, 493, 660, 672, 939 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 542, 574, 725, 734, 755 |
| BstNI | CCWGG | 1 cut(s) | 326 |
| BstSCI | CCNGG | 1 cut(s) | 324 |
| BstUI | CGCG | 1 cut(s) | 1146 |
| BstV1I | GCAGC | 4 cut(s) | 205, 529, 631, 700 |
| BstV2I | GAAGAC | 1 cut(s) | 953 |
| BstX2I | RGATCY | 2 cut(s) | 493, 660 |
| BstYI | RGATCY | 2 cut(s) | 493, 660 |
| BsuRI | GGCC | 4 cut(s) | 447, 487, 591, 749 |
| BtgI | CCRYGG | 1 cut(s) | 202 |
| BtsCI | GGATG | 1 cut(s) | 503 |
| Cac8I | GCNNGC | 2 cut(s) | 528, 645 |
| CaiI | CAGNNNCTG | 1 cut(s) | 533 |
| CciI | TCATGA | 2 cut(s) | 774, 1033 |
| CfoI | GCGC | 3 cut(s) | 198, 1148, 1164 |
| Cfr10I | RCCGGY | 2 cut(s) | 443, 483 |
| Cfr13I | GGNCC | 2 cut(s) | 164, 590 |
| CseI | GACGC | 4 cut(s) | 625, 659, 803, 1026 |
| Csp6I | GTAC | 4 cut(s) | 134, 811, 860, 881 |
| CviAII | CATG | 4 cut(s) | 775, 787, 1034, 1051 |
| CviQI | GTAC | 4 cut(s) | 134, 811, 860, 881 |
| DpnI | GATC | 6 cut(s) | 259, 320, 495, 662, 674, 941 |
| DpnII | GATC | 6 cut(s) | 257, 318, 493, 660, 672, 939 |
| DraI | TTTAAA | 1 cut(s) | 724 |
| EaeI | YGGCCR | 2 cut(s) | 445, 485 |
| EciI | GGCGGA | 1 cut(s) | 382 |
| Eco31I | GGTCTC | 1 cut(s) | 279 |
| Eco47I | GGWCC | 1 cut(s) | 164 |
| Eco47III | AGCGCT | 1 cut(s) | 1163 |
| EcoRI | GAATTC | 1 cut(s) | 905 |
| EcoRII | CCWGG | 1 cut(s) | 324 |
| Esp3I | CGTCTC | 1 cut(s) | 247 |
| FaeI | CATG | 4 cut(s) | 778, 790, 1037, 1054 |
| FaqI | GGGAC | 1 cut(s) | 250 |
| FatI | CATG | 4 cut(s) | 774, 786, 1033, 1050 |
| FauI | CCCGC | 2 cut(s) | 430, 652 |
| FblI | GTMKAC | 1 cut(s) | 517 |
| Fnu4HI | GCNGC | 7 cut(s) | 194, 292, 396, 543, 620, 714, 717 |
| FokI | GGATG | 1 cut(s) | 490 |
| Fsp4HI | GCNGC | 7 cut(s) | 194, 292, 396, 543, 620, 714, 717 |
| FspBI | CTAG | 6 cut(s) | 62, 221, 509, 665, 1101, 1165 |
| GlaI | GCGC | 3 cut(s) | 197, 1147, 1163 |
| GluI | GCNGC | 7 cut(s) | 194, 292, 396, 543, 620, 714, 717 |
| GsuI | CTGGAG | 1 cut(s) | 785 |
| HaeII | RGCGCY | 2 cut(s) | 199, 1165 |
| HaeIII | GGCC | 4 cut(s) | 447, 487, 591, 749 |
| HapII | CCGG | 6 cut(s) | 282, 345, 444, 458, 484, 1127 |
| HgaI | GACGC | 4 cut(s) | 625, 659, 803, 1026 |
| HhaI | GCGC | 3 cut(s) | 198, 1148, 1164 |
| Hin1II | CATG | 4 cut(s) | 778, 790, 1037, 1054 |
| Hin6I | GCGC | 3 cut(s) | 196, 1146, 1162 |
| HinP1I | GCGC | 3 cut(s) | 196, 1146, 1162 |
| HinfI | GANTC | 7 cut(s) | 32, 107, 212, 338, 424, 461, 1130 |
| HpaII | CCGG | 6 cut(s) | 282, 345, 444, 458, 484, 1127 |
| HphI | GGTGA | 4 cut(s) | 102, 107, 116, 136 |
| Hpy166II | GTNNAC | 1 cut(s) | 518 |
| Hpy188I | TCNGA | 7 cut(s) | 168, 233, 318, 690, 877, 999, 1016 |
| Hpy188III | TCNNGA | 9 cut(s) | 266, 428, 458, 775, 802, 943, 1034, 1101, 1127 |
| Hpy8I | GTNNAC | 1 cut(s) | 518 |
| Hpy99I | CGWCG | 1 cut(s) | 281 |
| HpyAV | CCTTC | 1 cut(s) | 606 |
| HpyCH4III | ACNGT | 1 cut(s) | 187 |
| HpyCH4V | TGCA | 6 cut(s) | 183, 193, 536, 545, 784, 974 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 542, 574, 725, 734, 755 |
| Hsp92II | CATG | 4 cut(s) | 778, 790, 1037, 1054 |
| HspAI | GCGC | 3 cut(s) | 196, 1146, 1162 |
| Kpn2I | TCCGGA | 2 cut(s) | 457, 1126 |
| Kzo9I | GATC | 6 cut(s) | 257, 318, 493, 660, 672, 939 |
| LmnI | GCTCC | 2 cut(s) | 65, 1046 |
| Lsp1109I | GCAGC | 4 cut(s) | 205, 529, 631, 700 |
| LweI | GCATC | 2 cut(s) | 545, 1029 |
| MaeI | CTAG | 6 cut(s) | 62, 221, 509, 665, 1101, 1165 |
| MalI | GATC | 6 cut(s) | 259, 320, 495, 662, 674, 941 |
| MboI | GATC | 6 cut(s) | 257, 318, 493, 660, 672, 939 |
| MboII | GAAGA | 4 cut(s) | 503, 621, 958, 1099 |
| MflI | RGATCY | 2 cut(s) | 493, 660 |
| MluCI | AATT | 7 cut(s) | 307, 768, 871, 905, 921, 1122, 1135 |
| MlyI | GAGTC | 3 cut(s) | 347, 433, 1139 |
| MmeI | TCCRAC | 2 cut(s) | 296, 994 |
| MroI | TCCGGA | 2 cut(s) | 457, 1126 |
| MroXI | GAANNNNTTC | 1 cut(s) | 882 |
| MseI | TTAA | 2 cut(s) | 159, 723 |
| MslI | CAYNNNNRTG | 5 cut(s) | 93, 149, 779, 789, 1082 |
| MspA1I | CMGCKG | 1 cut(s) | 647 |
| MspI | CCGG | 6 cut(s) | 282, 345, 444, 458, 484, 1127 |
| MspR9I | CCNGG | 1 cut(s) | 326 |
| MvaI | CCWGG | 1 cut(s) | 326 |
| MvnI | CGCG | 1 cut(s) | 1146 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 542, 574, 725, 734, 755 |
| NdeII | GATC | 6 cut(s) | 257, 318, 493, 660, 672, 939 |
| NlaIII | CATG | 4 cut(s) | 778, 790, 1037, 1054 |
| NlaIV | GGNNCC | 3 cut(s) | 442, 662, 1048 |
| PagI | TCATGA | 2 cut(s) | 774, 1033 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 253 |
| PdmI | GAANNNNTTC | 1 cut(s) | 882 |
| PfeI | GAWTC | 4 cut(s) | 32, 107, 212, 461 |
| PkrI | GCNGC | 7 cut(s) | 195, 293, 397, 544, 621, 715, 718 |
| PleI | GAGTC | 3 cut(s) | 346, 432, 1138 |
| PpsI | GAGTC | 3 cut(s) | 346, 432, 1138 |
| PsiI | TTATAA | 1 cut(s) | 1140 |
| Psp6I | CCWGG | 1 cut(s) | 324 |
| PspGI | CCWGG | 1 cut(s) | 324 |
| PspN4I | GGNNCC | 3 cut(s) | 442, 662, 1048 |
| PspPI | GGNCC | 2 cut(s) | 164, 590 |
| PstNI | CAGNNNCTG | 1 cut(s) | 533 |
| PsuI | RGATCY | 2 cut(s) | 493, 660 |
| RsaI | GTAC | 4 cut(s) | 135, 812, 861, 882 |
| RsaNI | GTAC | 4 cut(s) | 134, 811, 860, 881 |
| RseI | CAYNNNNRTG | 5 cut(s) | 93, 149, 779, 789, 1082 |
| SaqAI | TTAA | 2 cut(s) | 159, 723 |
| SatI | GCNGC | 7 cut(s) | 194, 292, 396, 543, 620, 714, 717 |
| Sau3AI | GATC | 6 cut(s) | 257, 318, 493, 660, 672, 939 |
| Sau96I | GGNCC | 2 cut(s) | 164, 590 |
| ScaI | AGTACT | 1 cut(s) | 882 |
| SchI | GAGTC | 3 cut(s) | 347, 433, 1139 |
| ScrFI | CCNGG | 1 cut(s) | 326 |
| SfaNI | GCATC | 2 cut(s) | 545, 1029 |
| SinI | GGWCC | 1 cut(s) | 164 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 93, 149, 779, 789, 1082 |
| Sse9I | AATT | 7 cut(s) | 307, 768, 871, 905, 921, 1122, 1135 |
| SsiI | CCGC | 8 cut(s) | 289, 292, 354, 393, 396, 437, 645, 717 |
| SspI | AATATT | 1 cut(s) | 454 |
| SspMI | CTAG | 6 cut(s) | 62, 221, 509, 665, 1101, 1165 |
| StyD4I | CCNGG | 1 cut(s) | 324 |
| TaaI | ACNGT | 1 cut(s) | 187 |
| TaqI | TCGA | 2 cut(s) | 336, 942 |
| TasI | AATT | 7 cut(s) | 307, 768, 871, 905, 921, 1122, 1135 |
| TatI | WGTACW | 3 cut(s) | 133, 859, 880 |
| TauI | GCSGC | 3 cut(s) | 294, 398, 719 |
| TfiI | GAWTC | 4 cut(s) | 32, 107, 212, 461 |
| Tru1I | TTAA | 2 cut(s) | 159, 723 |
| Tru9I | TTAA | 2 cut(s) | 159, 723 |
| TseI | GCWGC | 4 cut(s) | 193, 542, 619, 713 |
| TspDTI | ATGAA | 7 cut(s) | 120, 384, 393, 768, 803, 1022, 1067 |
| TspGWI | ACGGA | 3 cut(s) | 191, 262, 375 |
| VpaK11BI | GGWCC | 1 cut(s) | 164 |
| XapI | RAATTY | 2 cut(s) | 307, 905 |
| XbaI | TCTAGA | 1 cut(s) | 1100 |
| XmiI | GTMKAC | 1 cut(s) | 517 |
| XmnI | GAANNNNTTC | 1 cut(s) | 882 |
| XspI | CTAG | 6 cut(s) | 62, 221, 509, 665, 1101, 1165 |
| ZrmI | AGTACT | 1 cut(s) | 882 |