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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 79, 358 |
| AcsI | RAATTY | 1 cut(s) | 425 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 1 cut(s) | 373 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 1 cut(s) | 155 |
| AluI | AGCT | 1 cut(s) | 155 |
| Alw26I | GTCTC | 2 cut(s) | 292, 493 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| ApoI | RAATTY | 1 cut(s) | 425 |
| AseI | ATTAAT | 2 cut(s) | 258, 419 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 402 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BbsI | GAAGAC | 1 cut(s) | 473 |
| BccI | CCATC | 1 cut(s) | 334 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 512 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 292, 493 |
| BfaI | CTAG | 2 cut(s) | 126, 330 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmsI | GCATC | 2 cut(s) | 94, 439 |
| BpiI | GAAGAC | 1 cut(s) | 473 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 522 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseCI | ATCGAT | 1 cut(s) | 522 |
| BseGI | GGATG | 1 cut(s) | 210 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BshVI | ATCGAT | 1 cut(s) | 522 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 2 cut(s) | 292, 493 |
| BsmBI | CGTCTC | 1 cut(s) | 493 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp143I | GATC | 1 cut(s) | 441 |
| BspACI | CCGC | 2 cut(s) | 79, 358 |
| BspDI | ATCGAT | 1 cut(s) | 522 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssMI | GATC | 1 cut(s) | 441 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 507 |
| BstF5I | GGATG | 1 cut(s) | 210 |
| BstKTI | GATC | 1 cut(s) | 444 |
| BstMAI | GTCTC | 2 cut(s) | 292, 493 |
| BstMBI | GATC | 1 cut(s) | 441 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| BstV2I | GAAGAC | 1 cut(s) | 473 |
| Bsu15I | ATCGAT | 1 cut(s) | 522 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuTUI | ATCGAT | 1 cut(s) | 522 |
| BtgZI | GCGATG | 1 cut(s) | 467 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 210 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| ClaI | ATCGAT | 1 cut(s) | 522 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 2 cut(s) | 345, 534 |
| CviJI | RGCY | 6 cut(s) | 48, 124, 155, 182, 280, 354 |
| CviKI_1 | RGCY | 6 cut(s) | 48, 124, 155, 182, 280, 354 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 507 |
| DpnI | GATC | 1 cut(s) | 443 |
| DpnII | GATC | 1 cut(s) | 441 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRI | GAATTC | 1 cut(s) | 425 |
| Esp3I | CGTCTC | 1 cut(s) | 493 |
| FaeI | CATG | 2 cut(s) | 348, 537 |
| FaiI | YATR | 5 cut(s) | 228, 230, 346, 351, 535 |
| FatI | CATG | 2 cut(s) | 344, 533 |
| FokI | GGATG | 1 cut(s) | 197 |
| FspBI | CTAG | 2 cut(s) | 126, 330 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| Hin1II | CATG | 2 cut(s) | 348, 537 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 220, 236, 320, 469, 519 |
| Hpy188I | TCNGA | 3 cut(s) | 12, 52, 397 |
| Hpy188III | TCNNGA | 5 cut(s) | 71, 91, 119, 158, 383 |
| HpyAV | CCTTC | 2 cut(s) | 270, 490 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 2 cut(s) | 494, 533 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 507 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92II | CATG | 2 cut(s) | 348, 537 |
| Kzo9I | GATC | 1 cut(s) | 441 |
| LpnPI | CCDG | 5 cut(s) | 30, 95, 257, 286, 338 |
| LweI | GCATC | 2 cut(s) | 94, 439 |
| MaeI | CTAG | 2 cut(s) | 126, 330 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 2 cut(s) | 317, 526 |
| MalI | GATC | 1 cut(s) | 443 |
| MboI | GATC | 1 cut(s) | 441 |
| MboII | GAAGA | 3 cut(s) | 275, 308, 478 |
| MluCI | AATT | 2 cut(s) | 17, 425 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 463 |
| MnlI | CCTC | 2 cut(s) | 181, 365 |
| MroXI | GAANNNNTTC | 1 cut(s) | 402 |
| MseI | TTAA | 3 cut(s) | 258, 411, 419 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| NdeII | GATC | 1 cut(s) | 441 |
| NlaIII | CATG | 2 cut(s) | 348, 537 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 402 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 519 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 463 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 463 |
| PshBI | ATTAAT | 2 cut(s) | 258, 419 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SaqAI | TTAA | 3 cut(s) | 258, 411, 419 |
| Sau3AI | GATC | 1 cut(s) | 441 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 463 |
| SetI | ASST | 3 cut(s) | 138, 157, 315 |
| SfaNI | GCATC | 2 cut(s) | 94, 439 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 2 cut(s) | 17, 425 |
| SsiI | CCGC | 2 cut(s) | 79, 358 |
| SspMI | CTAG | 2 cut(s) | 126, 330 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 5 cut(s) | 31, 120, 294, 517, 522 |
| TasI | AATT | 2 cut(s) | 17, 425 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 519 |
| Tru1I | TTAA | 3 cut(s) | 258, 411, 419 |
| Tru9I | TTAA | 3 cut(s) | 258, 411, 419 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 1 cut(s) | 276 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| VspI | ATTAAT | 2 cut(s) | 258, 419 |
| XapI | RAATTY | 1 cut(s) | 425 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 103 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 402 |
| XspI | CTAG | 2 cut(s) | 126, 330 |