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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 615 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 161 |
| AccII | CGCG | 1 cut(s) | 461 |
| AciI | CCGC | 4 cut(s) | 76, 108, 583, 891 |
| AclI | AACGTT | 1 cut(s) | 534 |
| AcuI | CTGAAG | 2 cut(s) | 71, 836 |
| AfaI | GTAC | 1 cut(s) | 948 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 202, 307, 484 |
| AflII | CTTAAG | 1 cut(s) | 332 |
| AgsI | TTSAA | 8 cut(s) | 66, 265, 410, 598, 732, 840, 875, 887 |
| AjiI | CACGTC | 3 cut(s) | 126, 145, 163 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 368, 400 |
| AluBI | AGCT | 9 cut(s) | 83, 99, 150, 238, 398, 422, 502, 878, 963 |
| AluI | AGCT | 9 cut(s) | 83, 99, 150, 238, 398, 422, 502, 878, 963 |
| Alw21I | GWGCWC | 1 cut(s) | 384 |
| Alw26I | GTCTC | 3 cut(s) | 275, 645, 718 |
| Ama87I | CYCGRG | 2 cut(s) | 171, 278 |
| AoxI | GGCC | 3 cut(s) | 38, 658, 784 |
| ApeKI | GCWGC | 4 cut(s) | 45, 83, 99, 520 |
| AspA2I | CCTAGG | 1 cut(s) | 35 |
| AspLEI | GCGC | 2 cut(s) | 324, 463 |
| AspS9I | GGNCC | 4 cut(s) | 39, 310, 658, 785 |
| AsuC2I | CCSGG | 2 cut(s) | 172, 173 |
| AvaI | CYCGRG | 2 cut(s) | 171, 278 |
| AvaII | GGWCC | 1 cut(s) | 310 |
| AvrII | CCTAGG | 1 cut(s) | 35 |
| BbsI | GAAGAC | 2 cut(s) | 495, 698 |
| Bbv12I | GWGCWC | 1 cut(s) | 384 |
| BbvI | GCAGC | 4 cut(s) | 57, 70, 86, 532 |
| BccI | CCATC | 6 cut(s) | 25, 335, 365, 437, 564, 640 |
| BceAI | ACGGC | 1 cut(s) | 219 |
| BciVI | GTATCC | 1 cut(s) | 290 |
| BcnI | CCSGG | 2 cut(s) | 172, 173 |
| BcoDI | GTCTC | 3 cut(s) | 275, 645, 718 |
| BfaI | CTAG | 3 cut(s) | 36, 369, 964 |
| BfmI | CTRYAG | 1 cut(s) | 239 |
| BfrI | CTTAAG | 1 cut(s) | 332 |
| BfuI | GTATCC | 1 cut(s) | 290 |
| BglII | AGATCT | 1 cut(s) | 116 |
| BisI | GCNGC | 6 cut(s) | 46, 76, 84, 100, 108, 521 |
| BlnI | CCTAGG | 1 cut(s) | 35 |
| BlsI | GCNGC | 6 cut(s) | 47, 77, 85, 101, 109, 522 |
| Bme1390I | CCNGG | 2 cut(s) | 172, 173 |
| Bme18I | GGWCC | 1 cut(s) | 310 |
| BmeT110I | CYCGRG | 2 cut(s) | 171, 278 |
| BmgBI | CACGTC | 3 cut(s) | 126, 145, 163 |
| BmgT120I | GGNCC | 4 cut(s) | 39, 310, 658, 785 |
| BmiI | GGNNCC | 2 cut(s) | 311, 659 |
| BmrFI | CCNGG | 2 cut(s) | 172, 173 |
| BpiI | GAAGAC | 2 cut(s) | 495, 698 |
| BpuEI | CTTGAG | 1 cut(s) | 536 |
| BpuMI | CCSGG | 2 cut(s) | 172, 173 |
| BsaBI | GATNNNNATC | 1 cut(s) | 683 |
| BsaJI | CCNNGG | 2 cut(s) | 35, 171 |
| BsaWI | WCCGGW | 4 cut(s) | 25, 195, 230, 252 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 134, 164, 368, 398 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 202, 307, 484 |
| Bse118I | RCCGGY | 1 cut(s) | 215 |
| Bse1I | ACTGG | 2 cut(s) | 292, 787 |
| Bse8I | GATNNNNATC | 1 cut(s) | 683 |
| BseDI | CCNNGG | 2 cut(s) | 35, 171 |
| BseGI | GGATG | 1 cut(s) | 357 |
| BseJI | GATNNNNATC | 1 cut(s) | 683 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 202, 307, 484 |
| BseNI | ACTGG | 2 cut(s) | 292, 787 |
| BseXI | GCAGC | 4 cut(s) | 57, 70, 86, 532 |
| BseYI | CCCAGC | 2 cut(s) | 41, 787 |
| BsgI | GTGCAG | 1 cut(s) | 702 |
| Bsh1236I | CGCG | 1 cut(s) | 461 |
| Bsh1285I | CGRYCG | 1 cut(s) | 184 |
| BshFI | GGCC | 3 cut(s) | 40, 660, 786 |
| BsiEI | CGRYCG | 1 cut(s) | 184 |
| BsiHKAI | GWGCWC | 1 cut(s) | 384 |
| BsiHKCI | CYCGRG | 2 cut(s) | 171, 278 |
| BsiSI | CCGG | 6 cut(s) | 26, 172, 196, 216, 231, 253 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 202, 307, 484 |
| BsmAI | GTCTC | 3 cut(s) | 275, 645, 718 |
| BsmBI | CGTCTC | 1 cut(s) | 718 |
| BsmI | GAATGC | 1 cut(s) | 893 |
| BsnI | GGCC | 3 cut(s) | 40, 660, 786 |
| BsoBI | CYCGRG | 2 cut(s) | 171, 278 |
| Bsp1286I | GDGCHC | 1 cut(s) | 384 |
| Bsp1407I | TGTACA | 1 cut(s) | 946 |
| Bsp143I | GATC | 6 cut(s) | 116, 135, 185, 684, 880, 922 |
| BspACI | CCGC | 4 cut(s) | 76, 108, 583, 891 |
| BspANI | GGCC | 3 cut(s) | 40, 660, 786 |
| BspFNI | CGCG | 1 cut(s) | 461 |
| BspHI | TCATGA | 1 cut(s) | 438 |
| BspLI | GGNNCC | 2 cut(s) | 311, 659 |
| BspTI | CTTAAG | 1 cut(s) | 332 |
| BsrFI | RCCGGY | 1 cut(s) | 215 |
| BsrGI | TGTACA | 1 cut(s) | 946 |
| BsrI | ACTGG | 2 cut(s) | 292, 787 |
| BssAI | RCCGGY | 1 cut(s) | 215 |
| BssECI | CCNNGG | 2 cut(s) | 35, 171 |
| BssMI | GATC | 6 cut(s) | 116, 135, 185, 684, 880, 922 |
| BssT1I | CCWWGG | 1 cut(s) | 35 |
| Bst4CI | ACNGT | 1 cut(s) | 62 |
| BstAFI | CTTAAG | 1 cut(s) | 332 |
| BstAUI | TGTACA | 1 cut(s) | 946 |
| BstC8I | GCNNGC | 1 cut(s) | 396 |
| BstDEI | CTNAG | 1 cut(s) | 957 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 482 |
| BstF5I | GGATG | 1 cut(s) | 357 |
| BstFNI | CGCG | 1 cut(s) | 461 |
| BstHHI | GCGC | 2 cut(s) | 324, 463 |
| BstKTI | GATC | 6 cut(s) | 119, 138, 188, 687, 883, 925 |
| BstMAI | GTCTC | 3 cut(s) | 275, 645, 718 |
| BstMBI | GATC | 6 cut(s) | 116, 135, 185, 684, 880, 922 |
| BstMCI | CGRYCG | 1 cut(s) | 184 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 156, 165, 212, 410, 419 |
| BstSCI | CCNGG | 2 cut(s) | 170, 171 |
| BstSFI | CTRYAG | 1 cut(s) | 239 |
| BstUI | CGCG | 1 cut(s) | 461 |
| BstV1I | GCAGC | 4 cut(s) | 57, 70, 86, 532 |
| BstV2I | GAAGAC | 2 cut(s) | 495, 698 |
| BstX2I | RGATCY | 1 cut(s) | 116 |
| BstYI | RGATCY | 1 cut(s) | 116 |
| BsuI | GTATCC | 1 cut(s) | 290 |
| BsuRI | GGCC | 3 cut(s) | 40, 660, 786 |
| BtgZI | GCGATG | 1 cut(s) | 583 |
| BtrI | CACGTC | 3 cut(s) | 126, 145, 163 |
| BtsCI | GGATG | 1 cut(s) | 357 |
| BtsIMutI | CAGTG | 1 cut(s) | 719 |
| Cac8I | GCNNGC | 1 cut(s) | 396 |
| CciI | TCATGA | 1 cut(s) | 438 |
| CfoI | GCGC | 2 cut(s) | 324, 463 |
| Cfr10I | RCCGGY | 1 cut(s) | 215 |
| Cfr13I | GGNCC | 4 cut(s) | 39, 310, 658, 785 |
| Cfr9I | CCCGGG | 1 cut(s) | 171 |
| CseI | GACGC | 1 cut(s) | 467 |
| Csp6I | GTAC | 1 cut(s) | 947 |
| CviAII | CATG | 2 cut(s) | 439, 451 |
| CviQI | GTAC | 1 cut(s) | 947 |
| DdeI | CTNAG | 1 cut(s) | 957 |
| DpnI | GATC | 6 cut(s) | 118, 137, 187, 686, 882, 924 |
| DpnII | GATC | 6 cut(s) | 116, 135, 185, 684, 880, 922 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 161 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 161 |
| Eco130I | CCWWGG | 1 cut(s) | 35 |
| Eco47I | GGWCC | 1 cut(s) | 310 |
| Eco57I | CTGAAG | 2 cut(s) | 71, 836 |
| Eco88I | CYCGRG | 2 cut(s) | 171, 278 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 482 |
| EcoT14I | CCWWGG | 1 cut(s) | 35 |
| ErhI | CCWWGG | 1 cut(s) | 35 |
| Esp3I | CGTCTC | 1 cut(s) | 718 |
| FaeI | CATG | 2 cut(s) | 442, 454 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 251, 283, 833, 865, 867, 899 |
| FatI | CATG | 2 cut(s) | 438, 450 |
| Fnu4HI | GCNGC | 6 cut(s) | 46, 76, 84, 100, 108, 521 |
| FokI | GGATG | 1 cut(s) | 344 |
| Fsp4HI | GCNGC | 6 cut(s) | 46, 76, 84, 100, 108, 521 |
| FspBI | CTAG | 3 cut(s) | 36, 369, 964 |
| GlaI | GCGC | 2 cut(s) | 323, 462 |
| GluI | GCNGC | 6 cut(s) | 46, 76, 84, 100, 108, 521 |
| GsaI | CCCAGC | 2 cut(s) | 45, 791 |
| HaeIII | GGCC | 3 cut(s) | 40, 660, 786 |
| HapII | CCGG | 6 cut(s) | 26, 172, 196, 216, 231, 253 |
| HgaI | GACGC | 1 cut(s) | 467 |
| HhaI | GCGC | 2 cut(s) | 324, 463 |
| Hin1II | CATG | 2 cut(s) | 442, 454 |
| Hin6I | GCGC | 2 cut(s) | 322, 461 |
| HinP1I | GCGC | 2 cut(s) | 322, 461 |
| HincII | GTYRAC | 5 cut(s) | 14, 178, 201, 211, 221 |
| HindII | GTYRAC | 5 cut(s) | 14, 178, 201, 211, 221 |
| HinfI | GANTC | 4 cut(s) | 542, 694, 833, 916 |
| HpaII | CCGG | 6 cut(s) | 26, 172, 196, 216, 231, 253 |
| Hpy166II | GTNNAC | 6 cut(s) | 14, 178, 201, 211, 221, 949 |
| Hpy188I | TCNGA | 8 cut(s) | 96, 154, 314, 375, 622, 645, 744, 915 |
| Hpy188III | TCNNGA | 8 cut(s) | 280, 350, 439, 539, 554, 688, 884, 920 |
| Hpy8I | GTNNAC | 6 cut(s) | 14, 178, 201, 211, 221, 949 |
| HpyAV | CCTTC | 1 cut(s) | 715 |
| HpyCH4III | ACNGT | 1 cut(s) | 62 |
| HpyCH4IV | ACGT | 6 cut(s) | 125, 144, 162, 378, 534, 763 |
| HpyCH4V | TGCA | 2 cut(s) | 719, 758 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 156, 165, 212, 410, 419 |
| HpyF3I | CTNAG | 1 cut(s) | 957 |
| HpySE526I | ACGT | 6 cut(s) | 125, 144, 162, 378, 534, 763 |
| Hsp92II | CATG | 2 cut(s) | 442, 454 |
| HspAI | GCGC | 2 cut(s) | 322, 461 |
| Kzo9I | GATC | 6 cut(s) | 116, 135, 185, 684, 880, 922 |
| LmnI | GCTCC | 3 cut(s) | 155, 468, 859 |
| Lsp1109I | GCAGC | 4 cut(s) | 57, 70, 86, 532 |
| MaeI | CTAG | 3 cut(s) | 36, 369, 964 |
| MaeII | ACGT | 6 cut(s) | 125, 144, 162, 378, 534, 763 |
| MaeIII | GTNAC | 2 cut(s) | 248, 539 |
| MalI | GATC | 6 cut(s) | 118, 137, 187, 686, 882, 924 |
| MboI | GATC | 6 cut(s) | 116, 135, 185, 684, 880, 922 |
| MboII | GAAGA | 5 cut(s) | 500, 703, 828, 829, 841 |
| MflI | RGATCY | 1 cut(s) | 116 |
| MhlI | GDGCHC | 1 cut(s) | 384 |
| MluCI | AATT | 1 cut(s) | 736 |
| MlyI | GAGTC | 2 cut(s) | 536, 688 |
| MmeI | TCCRAC | 1 cut(s) | 177 |
| MnlI | CCTC | 7 cut(s) | 102, 203, 478, 488, 590, 639, 921 |
| MseI | TTAA | 2 cut(s) | 333, 927 |
| MslI | CAYNNNNRTG | 2 cut(s) | 437, 453 |
| MspCI | CTTAAG | 1 cut(s) | 332 |
| MspI | CCGG | 6 cut(s) | 26, 172, 196, 216, 231, 253 |
| MspR9I | CCNGG | 2 cut(s) | 172, 173 |
| Mva1269I | GAATGC | 1 cut(s) | 893 |
| MvnI | CGCG | 1 cut(s) | 461 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 156, 165, 212, 410, 419 |
| NciI | CCSGG | 2 cut(s) | 172, 173 |
| NdeII | GATC | 6 cut(s) | 116, 135, 185, 684, 880, 922 |
| NlaIII | CATG | 2 cut(s) | 442, 454 |
| NlaIV | GGNNCC | 2 cut(s) | 311, 659 |
| NmeAIII | GCCGAG | 1 cut(s) | 112 |
| NmuCI | GTSAC | 1 cut(s) | 539 |
| PaeR7I | CTCGAG | 1 cut(s) | 278 |
| PagI | TCATGA | 1 cut(s) | 438 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 131, 150 |
| PctI | GAATGC | 1 cut(s) | 893 |
| PfeI | GAWTC | 2 cut(s) | 833, 916 |
| PkrI | GCNGC | 6 cut(s) | 47, 77, 85, 101, 109, 522 |
| PleI | GAGTC | 2 cut(s) | 536, 688 |
| PpsI | GAGTC | 2 cut(s) | 536, 688 |
| PsiI | TTATAA | 1 cut(s) | 615 |
| Psp1406I | AACGTT | 1 cut(s) | 534 |
| PspFI | CCCAGC | 2 cut(s) | 41, 787 |
| PspN4I | GGNNCC | 2 cut(s) | 311, 659 |
| PspPI | GGNCC | 4 cut(s) | 39, 310, 658, 785 |
| PsuI | RGATCY | 1 cut(s) | 116 |
| RsaI | GTAC | 1 cut(s) | 948 |
| RsaNI | GTAC | 1 cut(s) | 947 |
| RseI | CAYNNNNRTG | 2 cut(s) | 437, 453 |
| SaqAI | TTAA | 2 cut(s) | 333, 927 |
| SatI | GCNGC | 6 cut(s) | 46, 76, 84, 100, 108, 521 |
| Sau3AI | GATC | 6 cut(s) | 116, 135, 185, 684, 880, 922 |
| Sau96I | GGNCC | 4 cut(s) | 39, 310, 658, 785 |
| SchI | GAGTC | 2 cut(s) | 536, 688 |
| ScrFI | CCNGG | 2 cut(s) | 172, 173 |
| SduI | GDGCHC | 1 cut(s) | 384 |
| SfcI | CTRYAG | 1 cut(s) | 239 |
| Sfr274I | CTCGAG | 1 cut(s) | 278 |
| SinI | GGWCC | 1 cut(s) | 310 |
| SlaI | CTCGAG | 1 cut(s) | 278 |
| SmaI | CCCGGG | 1 cut(s) | 173 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 437, 453 |
| SmlI | CTYRAG | 3 cut(s) | 278, 332, 515 |
| SmoI | CTYRAG | 3 cut(s) | 278, 332, 515 |
| Sse9I | AATT | 1 cut(s) | 736 |
| SsiI | CCGC | 4 cut(s) | 76, 108, 583, 891 |
| SspMI | CTAG | 3 cut(s) | 36, 369, 964 |
| StyD4I | CCNGG | 2 cut(s) | 170, 171 |
| StyI | CCWWGG | 1 cut(s) | 35 |
| TaaI | ACNGT | 1 cut(s) | 62 |
| TaiI | ACGT | 6 cut(s) | 128, 147, 165, 381, 537, 766 |
| TaqI | TCGA | 2 cut(s) | 279, 687 |
| TaqII | GACCGA | 1 cut(s) | 198 |
| TasI | AATT | 1 cut(s) | 736 |
| TatI | WGTACW | 1 cut(s) | 946 |
| TauI | GCSGC | 2 cut(s) | 78, 110 |
| TfiI | GAWTC | 2 cut(s) | 833, 916 |
| Tru1I | TTAA | 2 cut(s) | 333, 927 |
| Tru9I | TTAA | 2 cut(s) | 333, 927 |
| TscAI | CASTG | 1 cut(s) | 726 |
| TseFI | GTSAC | 1 cut(s) | 539 |
| TseI | GCWGC | 4 cut(s) | 45, 83, 99, 520 |
| Tsp45I | GTSAC | 1 cut(s) | 539 |
| TspDTI | ATGAA | 3 cut(s) | 467, 812, 839 |
| TspMI | CCCGGG | 1 cut(s) | 171 |
| TspRI | CASTG | 1 cut(s) | 726 |
| Vha464I | CTTAAG | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 1 cut(s) | 310 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 482 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 501 |
| XhoI | CTCGAG | 1 cut(s) | 278 |
| XmaI | CCCGGG | 1 cut(s) | 171 |
| XmaJI | CCTAGG | 1 cut(s) | 35 |
| XspI | CTAG | 3 cut(s) | 36, 369, 964 |