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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 297 |
| Acc65I | GGTACC | 1 cut(s) | 327 |
| AccB1I | GGYRCC | 1 cut(s) | 327 |
| AccBSI | CCGCTC | 1 cut(s) | 325 |
| AccII | CGCG | 1 cut(s) | 316 |
| AciI | CCGC | 2 cut(s) | 325, 394 |
| AclWI | GGATC | 1 cut(s) | 260 |
| AcuI | CTGAAG | 1 cut(s) | 255 |
| AcvI | CACGTG | 2 cut(s) | 416, 434 |
| AdeI | CACNNNGTG | 1 cut(s) | 419 |
| AfaI | GTAC | 2 cut(s) | 232, 329 |
| AfeI | AGCGCT | 2 cut(s) | 75, 86 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 135, 338, 435 |
| AflIII | ACRYGT | 2 cut(s) | 413, 431 |
| AgsI | TTSAA | 1 cut(s) | 124 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 124, 152 |
| AjnI | CCWGG | 1 cut(s) | 381 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 2 cut(s) | 64, 169 |
| AluI | AGCT | 2 cut(s) | 64, 169 |
| Alw26I | GTCTC | 1 cut(s) | 253 |
| AlwI | GGATC | 1 cut(s) | 260 |
| Aor51HI | AGCGCT | 2 cut(s) | 75, 86 |
| Asp718I | GGTACC | 1 cut(s) | 327 |
| AspLEI | GCGC | 4 cut(s) | 76, 87, 316, 318 |
| BanI | GGYRCC | 1 cut(s) | 327 |
| BanII | GRGCYC | 1 cut(s) | 365 |
| BauI | CACGAG | 1 cut(s) | 256 |
| BbrPI | CACGTG | 2 cut(s) | 416, 434 |
| BciT130I | CCWGG | 1 cut(s) | 383 |
| BciVI | GTATCC | 1 cut(s) | 403 |
| BcoDI | GTCTC | 1 cut(s) | 253 |
| BfaI | CTAG | 1 cut(s) | 77 |
| BfoI | RGCGCY | 2 cut(s) | 77, 88 |
| BfuI | GTATCC | 1 cut(s) | 403 |
| Bme1390I | CCNGG | 1 cut(s) | 383 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 124, 152 |
| BmiI | GGNNCC | 1 cut(s) | 329 |
| BmrFI | CCNGG | 1 cut(s) | 383 |
| BmsI | GCATC | 1 cut(s) | 43 |
| BsaAI | YACGTR | 2 cut(s) | 416, 434 |
| BsaI | GGTCTC | 1 cut(s) | 253 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 26, 56, 430 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 135, 338, 435 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| BseBI | CCWGG | 1 cut(s) | 383 |
| BseGI | GGATG | 1 cut(s) | 58 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 135, 338, 435 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 1 cut(s) | 40 |
| BsePI | GCGCGC | 1 cut(s) | 314 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| Bsh1236I | CGCG | 1 cut(s) | 316 |
| BshNI | GGYRCC | 1 cut(s) | 327 |
| BslFI | GGGAC | 2 cut(s) | 357, 366 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 135, 338, 435 |
| BsmAI | GTCTC | 1 cut(s) | 253 |
| BsmFI | GGGAC | 2 cut(s) | 357, 366 |
| Bso31I | GGTCTC | 1 cut(s) | 253 |
| Bsp1286I | GDGCHC | 1 cut(s) | 365 |
| Bsp143I | GATC | 2 cut(s) | 45, 252 |
| BspACI | CCGC | 2 cut(s) | 325, 394 |
| BspCNI | CTCAG | 1 cut(s) | 39 |
| BspFNI | CGCG | 1 cut(s) | 316 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspLI | GGNNCC | 1 cut(s) | 329 |
| BspPI | GGATC | 1 cut(s) | 260 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 1 cut(s) | 327 |
| BspTNI | GGTCTC | 1 cut(s) | 253 |
| BsrBI | CCGCTC | 1 cut(s) | 325 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BssHII | GCGCGC | 1 cut(s) | 314 |
| BssMI | GATC | 2 cut(s) | 45, 252 |
| BssSI | CACGAG | 1 cut(s) | 256 |
| Bst2BI | CACGAG | 1 cut(s) | 256 |
| Bst2UI | CCWGG | 1 cut(s) | 383 |
| Bst4CI | ACNGT | 2 cut(s) | 230, 374 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstBAI | YACGTR | 2 cut(s) | 416, 434 |
| BstC8I | GCNNGC | 1 cut(s) | 316 |
| BstDEI | CTNAG | 3 cut(s) | 26, 273, 333 |
| BstF5I | GGATG | 1 cut(s) | 58 |
| BstFNI | CGCG | 1 cut(s) | 316 |
| BstH2I | RGCGCY | 2 cut(s) | 77, 88 |
| BstHHI | GCGC | 4 cut(s) | 76, 87, 316, 318 |
| BstKTI | GATC | 2 cut(s) | 48, 255 |
| BstMAI | GTCTC | 1 cut(s) | 253 |
| BstMBI | GATC | 2 cut(s) | 45, 252 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 322 |
| BstNI | CCWGG | 1 cut(s) | 383 |
| BstSCI | CCNGG | 1 cut(s) | 381 |
| BstUI | CGCG | 1 cut(s) | 316 |
| BsuI | GTATCC | 1 cut(s) | 403 |
| BtsCI | GGATG | 1 cut(s) | 58 |
| Cac8I | GCNNGC | 1 cut(s) | 316 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 4 cut(s) | 76, 87, 316, 318 |
| Csp6I | GTAC | 2 cut(s) | 231, 328 |
| CviAII | CATG | 3 cut(s) | 130, 284, 347 |
| CviJI | RGCY | 4 cut(s) | 64, 169, 206, 363 |
| CviKI_1 | RGCY | 4 cut(s) | 64, 169, 206, 363 |
| CviQI | GTAC | 2 cut(s) | 231, 328 |
| DdeI | CTNAG | 3 cut(s) | 26, 273, 333 |
| DpnI | GATC | 2 cut(s) | 47, 254 |
| DpnII | GATC | 2 cut(s) | 45, 252 |
| DraIII | CACNNNGTG | 1 cut(s) | 419 |
| DriI | GACNNNNNGTC | 2 cut(s) | 124, 152 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 124, 152 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Eco24I | GRGCYC | 1 cut(s) | 365 |
| Eco31I | GGTCTC | 1 cut(s) | 253 |
| Eco47III | AGCGCT | 2 cut(s) | 75, 86 |
| Eco57I | CTGAAG | 1 cut(s) | 255 |
| Eco72I | CACGTG | 2 cut(s) | 416, 434 |
| EcoRII | CCWGG | 1 cut(s) | 381 |
| EcoT38I | GRGCYC | 1 cut(s) | 365 |
| FaeI | CATG | 3 cut(s) | 133, 287, 350 |
| FaqI | GGGAC | 2 cut(s) | 357, 366 |
| FatI | CATG | 3 cut(s) | 129, 283, 346 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 1 cut(s) | 65 |
| FriOI | GRGCYC | 1 cut(s) | 365 |
| FspBI | CTAG | 1 cut(s) | 77 |
| GlaI | GCGC | 4 cut(s) | 75, 86, 315, 317 |
| HaeII | RGCGCY | 2 cut(s) | 77, 88 |
| HhaI | GCGC | 4 cut(s) | 76, 87, 316, 318 |
| Hin1II | CATG | 3 cut(s) | 133, 287, 350 |
| Hin6I | GCGC | 4 cut(s) | 74, 85, 314, 316 |
| HinP1I | GCGC | 4 cut(s) | 74, 85, 314, 316 |
| HinfI | GANTC | 2 cut(s) | 6, 104 |
| Hpy166II | GTNNAC | 1 cut(s) | 146 |
| Hpy188I | TCNGA | 1 cut(s) | 29 |
| Hpy188III | TCNNGA | 2 cut(s) | 256, 284 |
| Hpy8I | GTNNAC | 1 cut(s) | 146 |
| HpyAV | CCTTC | 2 cut(s) | 202, 380 |
| HpyCH4III | ACNGT | 2 cut(s) | 230, 374 |
| HpyCH4IV | ACGT | 3 cut(s) | 355, 415, 433 |
| HpyCH4V | TGCA | 2 cut(s) | 56, 302 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 322 |
| HpyF3I | CTNAG | 3 cut(s) | 26, 273, 333 |
| HpySE526I | ACGT | 3 cut(s) | 355, 415, 433 |
| Hsp92II | CATG | 3 cut(s) | 133, 287, 350 |
| HspAI | GCGC | 4 cut(s) | 74, 85, 314, 316 |
| KpnI | GGTACC | 1 cut(s) | 331 |
| Kzo9I | GATC | 2 cut(s) | 45, 252 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LmnI | GCTCC | 2 cut(s) | 311, 322 |
| LpnPI | CCDG | 5 cut(s) | 129, 165, 231, 368, 395 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 1 cut(s) | 77 |
| MaeII | ACGT | 3 cut(s) | 355, 415, 433 |
| MaeIII | GTNAC | 1 cut(s) | 154 |
| MalI | GATC | 2 cut(s) | 47, 254 |
| MbiI | CCGCTC | 1 cut(s) | 325 |
| MboI | GATC | 2 cut(s) | 45, 252 |
| MboII | GAAGA | 1 cut(s) | 92 |
| MhlI | GDGCHC | 1 cut(s) | 365 |
| MluCI | AATT | 2 cut(s) | 171, 292 |
| MnlI | CCTC | 6 cut(s) | 119, 122, 129, 280, 343, 434 |
| MspR9I | CCNGG | 1 cut(s) | 383 |
| MvaI | CCWGG | 1 cut(s) | 383 |
| MvnI | CGCG | 1 cut(s) | 316 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 322 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 45, 252 |
| NlaIII | CATG | 3 cut(s) | 133, 287, 350 |
| NlaIV | GGNNCC | 1 cut(s) | 329 |
| NmuCI | GTSAC | 1 cut(s) | 154 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PauI | GCGCGC | 1 cut(s) | 314 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PmaCI | CACGTG | 2 cut(s) | 416, 434 |
| PmlI | CACGTG | 2 cut(s) | 416, 434 |
| Ppu21I | YACGTR | 2 cut(s) | 416, 434 |
| PsiI | TTATAA | 1 cut(s) | 297 |
| Psp6I | CCWGG | 1 cut(s) | 381 |
| PspCI | CACGTG | 2 cut(s) | 416, 434 |
| PspGI | CCWGG | 1 cut(s) | 381 |
| PspN4I | GGNNCC | 1 cut(s) | 329 |
| PteI | GCGCGC | 1 cut(s) | 314 |
| RsaI | GTAC | 2 cut(s) | 232, 329 |
| RsaNI | GTAC | 2 cut(s) | 231, 328 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| Sau3AI | GATC | 2 cut(s) | 45, 252 |
| ScrFI | CCNGG | 1 cut(s) | 383 |
| SduI | GDGCHC | 1 cut(s) | 365 |
| SetI | ASST | 8 cut(s) | 66, 140, 154, 171, 194, 358, 418, 436 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| Sse9I | AATT | 2 cut(s) | 171, 292 |
| SsiI | CCGC | 2 cut(s) | 325, 394 |
| SspMI | CTAG | 1 cut(s) | 77 |
| StyD4I | CCNGG | 1 cut(s) | 381 |
| TaaI | ACNGT | 2 cut(s) | 230, 374 |
| TaiI | ACGT | 3 cut(s) | 358, 418, 436 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TasI | AATT | 2 cut(s) | 171, 292 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| TseFI | GTSAC | 1 cut(s) | 154 |
| Tsp45I | GTSAC | 1 cut(s) | 154 |
| TspDTI | ATGAA | 1 cut(s) | 272 |
| TspGWI | ACGGA | 1 cut(s) | 265 |
| XspI | CTAG | 1 cut(s) | 77 |