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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1140 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1476 |
| AccB1I | GGYRCC | 1 cut(s) | 544 |
| AccI | GTMKAC | 1 cut(s) | 1577 |
| AccII | CGCG | 1 cut(s) | 1771 |
| AccIII | TCCGGA | 3 cut(s) | 130, 765, 1396 |
| AclI | AACGTT | 1 cut(s) | 1059 |
| AclWI | GGATC | 1 cut(s) | 582 |
| AcoI | YGGCCR | 5 cut(s) | 159, 332, 621, 676, 721 |
| AcsI | RAATTY | 3 cut(s) | 57, 68, 870 |
| AcuI | CTGAAG | 1 cut(s) | 376 |
| AcvI | CACGTG | 1 cut(s) | 455 |
| AcyI | GRCGYC | 2 cut(s) | 545, 1923 |
| AfaI | GTAC | 2 cut(s) | 286, 1092 |
| AflII | CTTAAG | 1 cut(s) | 857 |
| AflIII | ACRYGT | 1 cut(s) | 1580 |
| AgeI | ACCGGT | 1 cut(s) | 177 |
| AgsI | TTSAA | 4 cut(s) | 110, 935, 1123, 1257 |
| AjiI | CACGTC | 5 cut(s) | 481, 528, 563, 584, 603 |
| AjnI | CCWGG | 6 cut(s) | 122, 334, 892, 1842, 2018, 2046 |
| Alw21I | GWGCWC | 3 cut(s) | 909, 1311, 1528 |
| Alw26I | GTCTC | 5 cut(s) | 800, 1170, 1243, 1593, 1796 |
| Alw44I | GTGCAC | 1 cut(s) | 1524 |
| AlwI | GGATC | 1 cut(s) | 582 |
| Ama87I | CYCGRG | 1 cut(s) | 803 |
| Aor13HI | TCCGGA | 3 cut(s) | 130, 765, 1396 |
| ApaLI | GTGCAC | 1 cut(s) | 1524 |
| ApeKI | GCWGC | 5 cut(s) | 145, 367, 458, 1045, 1994 |
| ApoI | RAATTY | 3 cut(s) | 57, 68, 870 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1640, 1672 |
| AsiGI | ACCGGT | 1 cut(s) | 177 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1152 |
| AspLEI | GCGC | 6 cut(s) | 145, 547, 818, 849, 1773, 1839 |
| AspS9I | GGNCC | 6 cut(s) | 28, 430, 464, 835, 1478, 1882 |
| AsuC2I | CCSGG | 5 cut(s) | 158, 233, 304, 613, 1881 |
| AsuHPI | GGTGA | 4 cut(s) | 314, 745, 1636, 1869 |
| AsuII | TTCGAA | 1 cut(s) | 1739 |
| AsuNHI | GCTAGC | 1 cut(s) | 1870 |
| AvaI | CYCGRG | 1 cut(s) | 803 |
| AvaII | GGWCC | 2 cut(s) | 835, 1478 |
| BaeGI | GKGCMC | 2 cut(s) | 1420, 1528 |
| BanI | GGYRCC | 1 cut(s) | 544 |
| BanII | GRGCYC | 1 cut(s) | 1311 |
| BbrPI | CACGTG | 1 cut(s) | 455 |
| BbsI | GAAGAC | 1 cut(s) | 1020 |
| Bbv12I | GWGCWC | 3 cut(s) | 909, 1311, 1528 |
| BbvI | GCAGC | 5 cut(s) | 132, 354, 470, 1057, 1981 |
| BccI | CCATC | 5 cut(s) | 860, 890, 1089, 1165, 1776 |
| BceAI | ACGGC | 3 cut(s) | 156, 444, 636 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 127, 161 |
| BciT130I | CCWGG | 6 cut(s) | 124, 336, 894, 1844, 2020, 2048 |
| BciVI | GTATCC | 1 cut(s) | 815 |
| BcnI | CCSGG | 5 cut(s) | 158, 233, 304, 613, 1881 |
| BcoDI | GTCTC | 5 cut(s) | 800, 1170, 1243, 1593, 1796 |
| BfaI | CTAG | 5 cut(s) | 549, 1371, 1871, 1910, 2039 |
| BfmI | CTRYAG | 2 cut(s) | 1408, 2001 |
| BfoI | RGCGCY | 2 cut(s) | 146, 548 |
| BfrI | CTTAAG | 1 cut(s) | 857 |
| BfuI | GTATCC | 1 cut(s) | 815 |
| BglII | AGATCT | 1 cut(s) | 222 |
| Bme18I | GGWCC | 2 cut(s) | 835, 1478 |
| BmeT110I | CYCGRG | 1 cut(s) | 803 |
| BmgBI | CACGTC | 5 cut(s) | 481, 528, 563, 584, 603 |
| BmgT120I | GGNCC | 6 cut(s) | 28, 430, 464, 835, 1478, 1882 |
| BmsI | GCATC | 4 cut(s) | 288, 617, 754, 1801 |
| BmtI | GCTAGC | 1 cut(s) | 1874 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1950 |
| BpiI | GAAGAC | 1 cut(s) | 1020 |
| BpmI | CTGGAG | 1 cut(s) | 106 |
| Bpu10I | CCTNAGC | 1 cut(s) | 948 |
| Bpu14I | TTCGAA | 1 cut(s) | 1739 |
| BpuEI | CTTGAG | 1 cut(s) | 1061 |
| BpuMI | CCSGG | 5 cut(s) | 158, 233, 304, 613, 1881 |
| BsaAI | YACGTR | 1 cut(s) | 455 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1208 |
| BsaHI | GRCGYC | 2 cut(s) | 545, 1923 |
| BsaJI | CCNNGG | 6 cut(s) | 426, 1377, 1534, 1725, 1843, 2046 |
| BsaWI | WCCGGW | 7 cut(s) | 130, 177, 309, 324, 571, 765, 1396 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 465, 495 |
| Bse118I | RCCGGY | 6 cut(s) | 177, 199, 330, 350, 623, 649 |
| Bse1I | ACTGG | 2 cut(s) | 817, 1691 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1208 |
| BseAI | TCCGGA | 3 cut(s) | 130, 765, 1396 |
| BseBI | CCWGG | 6 cut(s) | 124, 336, 894, 1844, 2020, 2048 |
| BseDI | CCNNGG | 6 cut(s) | 426, 1377, 1534, 1725, 1843, 2046 |
| BseGI | GGATG | 5 cut(s) | 342, 608, 774, 882, 1816 |
| BseJI | GATNNNNATC | 1 cut(s) | 1208 |
| BseMII | CTCAG | 1 cut(s) | 1820 |
| BseNI | ACTGG | 2 cut(s) | 817, 1691 |
| BseSI | GKGCMC | 2 cut(s) | 1420, 1528 |
| BseX3I | CGGCCG | 2 cut(s) | 159, 621 |
| BseXI | GCAGC | 5 cut(s) | 132, 354, 470, 1057, 1981 |
| BsgI | GTGCAG | 3 cut(s) | 353, 477, 1576 |
| Bsh1236I | CGCG | 1 cut(s) | 1771 |
| Bsh1285I | CGRYCG | 3 cut(s) | 162, 182, 624 |
| BshNI | GGYRCC | 1 cut(s) | 544 |
| BshTI | ACCGGT | 1 cut(s) | 177 |
| BsiEI | CGRYCG | 3 cut(s) | 162, 182, 624 |
| BsiHKAI | GWGCWC | 3 cut(s) | 909, 1311, 1528 |
| BsiHKCI | CYCGRG | 1 cut(s) | 803 |
| BslFI | GGGAC | 3 cut(s) | 277, 782, 1472 |
| BsmAI | GTCTC | 5 cut(s) | 800, 1170, 1243, 1593, 1796 |
| BsmBI | CGTCTC | 2 cut(s) | 1243, 1593 |
| BsmFI | GGGAC | 3 cut(s) | 277, 782, 1472 |
| BsoBI | CYCGRG | 1 cut(s) | 803 |
| Bsp119I | TTCGAA | 1 cut(s) | 1739 |
| Bsp1286I | GDGCHC | 4 cut(s) | 909, 1311, 1420, 1528 |
| Bsp13I | TCCGGA | 3 cut(s) | 130, 765, 1396 |
| Bsp143I | GATC | 4 cut(s) | 222, 574, 1209, 2005 |
| Bsp19I | CCATGG | 1 cut(s) | 1725 |
| BspCNI | CTCAG | 1 cut(s) | 1819 |
| BspEI | TCCGGA | 3 cut(s) | 130, 765, 1396 |
| BspFNI | CGCG | 1 cut(s) | 1771 |
| BspHI | TCATGA | 2 cut(s) | 963, 1303 |
| BspMAI | CTGCAG | 1 cut(s) | 2005 |
| BspOI | GCTAGC | 1 cut(s) | 1874 |
| BspPI | GGATC | 1 cut(s) | 582 |
| BspT104I | TTCGAA | 1 cut(s) | 1739 |
| BspT107I | GGYRCC | 1 cut(s) | 544 |
| BspTI | CTTAAG | 1 cut(s) | 857 |
| BsrFI | RCCGGY | 6 cut(s) | 177, 199, 330, 350, 623, 649 |
| BsrI | ACTGG | 2 cut(s) | 817, 1691 |
| BssAI | RCCGGY | 6 cut(s) | 177, 199, 330, 350, 623, 649 |
| BssECI | CCNNGG | 6 cut(s) | 426, 1377, 1534, 1725, 1843, 2046 |
| BssMI | GATC | 4 cut(s) | 222, 574, 1209, 2005 |
| BssNI | GRCGYC | 2 cut(s) | 545, 1923 |
| BssT1I | CCWWGG | 1 cut(s) | 1725 |
| Bst2UI | CCWGG | 6 cut(s) | 124, 336, 894, 1844, 2020, 2048 |
| Bst4CI | ACNGT | 1 cut(s) | 1535 |
| BstACI | GRCGYC | 2 cut(s) | 545, 1923 |
| BstAFI | CTTAAG | 1 cut(s) | 857 |
| BstBAI | YACGTR | 1 cut(s) | 455 |
| BstBI | TTCGAA | 1 cut(s) | 1739 |
| BstC8I | GCNNGC | 7 cut(s) | 463, 543, 651, 921, 1524, 1835, 1872 |
| BstDEI | CTNAG | 2 cut(s) | 948, 1806 |
| BstDSI | CCRYGG | 4 cut(s) | 426, 1377, 1534, 1725 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1007 |
| BstF5I | GGATG | 5 cut(s) | 342, 608, 774, 882, 1816 |
| BstFNI | CGCG | 1 cut(s) | 1771 |
| BstH2I | RGCGCY | 2 cut(s) | 146, 548 |
| BstHHI | GCGC | 6 cut(s) | 145, 547, 818, 849, 1773, 1839 |
| BstKTI | GATC | 4 cut(s) | 225, 577, 1212, 2008 |
| BstMAI | GTCTC | 5 cut(s) | 800, 1170, 1243, 1593, 1796 |
| BstMBI | GATC | 4 cut(s) | 222, 574, 1209, 2005 |
| BstMCI | CGRYCG | 3 cut(s) | 162, 182, 624 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 237, 530, 586, 605, 935, 944, 2000 |
| BstNI | CCWGG | 6 cut(s) | 124, 336, 894, 1844, 2020, 2048 |
| BstNSI | RCATGY | 2 cut(s) | 1584, 2059 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1950 |
| BstSFI | CTRYAG | 2 cut(s) | 1408, 2001 |
| BstSLI | GKGCMC | 2 cut(s) | 1420, 1528 |
| BstUI | CGCG | 1 cut(s) | 1771 |
| BstV1I | GCAGC | 5 cut(s) | 132, 354, 470, 1057, 1981 |
| BstV2I | GAAGAC | 1 cut(s) | 1020 |
| BstX2I | RGATCY | 1 cut(s) | 222 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 893 |
| BstYI | RGATCY | 1 cut(s) | 222 |
| BstZI | CGGCCG | 2 cut(s) | 159, 621 |
| BsuI | GTATCC | 1 cut(s) | 815 |
| BtgI | CCRYGG | 4 cut(s) | 426, 1377, 1534, 1725 |
| BtgZI | GCGATG | 1 cut(s) | 1744 |
| BtrI | CACGTC | 5 cut(s) | 481, 528, 563, 584, 603 |
| BtsCI | GGATG | 5 cut(s) | 342, 608, 774, 882, 1816 |
| BtsI | GCAGTG | 2 cut(s) | 594, 1948 |
| BtsIMutI | CAGTG | 3 cut(s) | 594, 1684, 1948 |
| Cac8I | GCNNGC | 7 cut(s) | 463, 543, 651, 921, 1524, 1835, 1872 |
| CciI | TCATGA | 2 cut(s) | 963, 1303 |
| CfoI | GCGC | 6 cut(s) | 145, 547, 818, 849, 1773, 1839 |
| Cfr10I | RCCGGY | 6 cut(s) | 177, 199, 330, 350, 623, 649 |
| Cfr13I | GGNCC | 6 cut(s) | 28, 430, 464, 835, 1478, 1882 |
| CseI | GACGC | 4 cut(s) | 373, 992, 1440, 1912 |
| Csp6I | GTAC | 2 cut(s) | 285, 1091 |
| CspAI | ACCGGT | 1 cut(s) | 177 |
| CviAII | CATG | 8 cut(s) | 228, 964, 976, 1304, 1321, 1581, 1726, 2056 |
| CviQI | GTAC | 2 cut(s) | 285, 1091 |
| DdeI | CTNAG | 2 cut(s) | 948, 1806 |
| DinI | GGCGCC | 1 cut(s) | 546 |
| DpnI | GATC | 4 cut(s) | 224, 576, 1211, 2007 |
| DpnII | GATC | 4 cut(s) | 222, 574, 1209, 2005 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1476 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1476 |
| EaeI | YGGCCR | 5 cut(s) | 159, 332, 621, 676, 721 |
| EagI | CGGCCG | 2 cut(s) | 159, 621 |
| Ecl136II | GAGCTC | 1 cut(s) | 1309 |
| EclXI | CGGCCG | 2 cut(s) | 159, 621 |
| Eco130I | CCWWGG | 1 cut(s) | 1725 |
| Eco24I | GRGCYC | 1 cut(s) | 1311 |
| Eco47I | GGWCC | 2 cut(s) | 835, 1478 |
| Eco52I | CGGCCG | 2 cut(s) | 159, 621 |
| Eco53kI | GAGCTC | 1 cut(s) | 1309 |
| Eco57I | CTGAAG | 1 cut(s) | 376 |
| Eco72I | CACGTG | 1 cut(s) | 455 |
| Eco88I | CYCGRG | 1 cut(s) | 803 |
| EcoICRI | GAGCTC | 1 cut(s) | 1309 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1007 |
| EcoRI | GAATTC | 1 cut(s) | 870 |
| EcoRII | CCWGG | 6 cut(s) | 122, 334, 892, 1842, 2018, 2046 |
| EcoT14I | CCWWGG | 1 cut(s) | 1725 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 1311 |
| EgeI | GGCGCC | 1 cut(s) | 546 |
| EheI | GGCGCC | 1 cut(s) | 546 |
| ErhI | CCWWGG | 1 cut(s) | 1725 |
| Esp3I | CGTCTC | 2 cut(s) | 1243, 1593 |
| FaeI | CATG | 8 cut(s) | 231, 967, 979, 1307, 1324, 1584, 1729, 2059 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 776, 808 |
| FaqI | GGGAC | 3 cut(s) | 277, 782, 1472 |
| FatI | CATG | 8 cut(s) | 227, 963, 975, 1303, 1320, 1580, 1725, 2055 |
| FauNDI | CATATG | 2 cut(s) | 1483, 2010 |
| FblI | GTMKAC | 1 cut(s) | 1577 |
| FokI | GGATG | 5 cut(s) | 329, 595, 781, 869, 1823 |
| FriOI | GRGCYC | 1 cut(s) | 1311 |
| FspBI | CTAG | 5 cut(s) | 549, 1371, 1871, 1910, 2039 |
| GlaI | GCGC | 6 cut(s) | 144, 546, 817, 848, 1772, 1838 |
| GsuI | CTGGAG | 1 cut(s) | 106 |
| HaeII | RGCGCY | 2 cut(s) | 146, 548 |
| HgaI | GACGC | 4 cut(s) | 373, 992, 1440, 1912 |
| HhaI | GCGC | 6 cut(s) | 145, 547, 818, 849, 1773, 1839 |
| Hin1I | GRCGYC | 2 cut(s) | 545, 1923 |
| Hin1II | CATG | 8 cut(s) | 231, 967, 979, 1307, 1324, 1584, 1729, 2059 |
| Hin6I | GCGC | 6 cut(s) | 143, 545, 816, 847, 1771, 1837 |
| HinP1I | GCGC | 6 cut(s) | 143, 545, 816, 847, 1771, 1837 |
| HincII | GTYRAC | 5 cut(s) | 398, 618, 629, 641, 2053 |
| HindII | GTYRAC | 5 cut(s) | 398, 618, 629, 641, 2053 |
| HindIII | AAGCTT | 2 cut(s) | 1149, 1697 |
| HpaI | GTTAAC | 1 cut(s) | 2053 |
| HphI | GGTGA | 4 cut(s) | 314, 745, 1636, 1869 |
| Hpy166II | GTNNAC | 9 cut(s) | 253, 398, 618, 629, 641, 1526, 1578, 1644, 2053 |
| Hpy8I | GTNNAC | 9 cut(s) | 253, 398, 618, 629, 641, 1526, 1578, 1644, 2053 |
| Hpy99I | CGWCG | 3 cut(s) | 142, 713, 1652 |
| HpyAV | CCTTC | 9 cut(s) | 266, 643, 1240, 1277, 1496, 1594, 1895, 1952, 2036 |
| HpyCH4III | ACNGT | 1 cut(s) | 1535 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 370, 458, 1244, 1526, 1557, 1941, 2003 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 237, 530, 586, 605, 935, 944, 2000 |
| HpyF3I | CTNAG | 2 cut(s) | 948, 1806 |
| Hsp92I | GRCGYC | 2 cut(s) | 545, 1923 |
| Hsp92II | CATG | 8 cut(s) | 231, 967, 979, 1307, 1324, 1584, 1729, 2059 |
| HspAI | GCGC | 6 cut(s) | 143, 545, 816, 847, 1771, 1837 |
| KasI | GGCGCC | 1 cut(s) | 544 |
| Kpn2I | TCCGGA | 3 cut(s) | 130, 765, 1396 |
| KroI | GCCGGC | 1 cut(s) | 649 |
| KroNI | GCCGGC | 1 cut(s) | 651 |
| KspAI | GTTAAC | 1 cut(s) | 2053 |
| Kzo9I | GATC | 4 cut(s) | 222, 574, 1209, 2005 |
| LmnI | GCTCC | 3 cut(s) | 1316, 1438, 1785 |
| Lsp1109I | GCAGC | 5 cut(s) | 132, 354, 470, 1057, 1981 |
| LweI | GCATC | 4 cut(s) | 288, 617, 754, 1801 |
| MaeI | CTAG | 5 cut(s) | 549, 1371, 1871, 1910, 2039 |
| MaeIII | GTNAC | 5 cut(s) | 190, 733, 773, 1064, 1943 |
| MalI | GATC | 4 cut(s) | 224, 576, 1211, 2007 |
| MboI | GATC | 4 cut(s) | 222, 574, 1209, 2005 |
| MboII | GAAGA | 6 cut(s) | 223, 232, 428, 1025, 1369, 1846 |
| MflI | RGATCY | 1 cut(s) | 222 |
| MhlI | GDGCHC | 4 cut(s) | 909, 1311, 1420, 1528 |
| MluCI | AATT | 7 cut(s) | 57, 68, 870, 957, 1251, 1261, 1462 |
| Mly113I | GGCGCC | 1 cut(s) | 545 |
| MlyI | GAGTC | 5 cut(s) | 136, 1061, 1409, 1548, 1798 |
| MmeI | TCCRAC | 1 cut(s) | 732 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MreI | CGCCGGCG | 1 cut(s) | 649 |
| MroI | TCCGGA | 3 cut(s) | 130, 765, 1396 |
| MroNI | GCCGGC | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1152 |
| MseI | TTAA | 2 cut(s) | 858, 2052 |
| MslI | CAYNNNNRTG | 1 cut(s) | 978 |
| MspA1I | CMGCKG | 1 cut(s) | 461 |
| MspCI | CTTAAG | 1 cut(s) | 857 |
| MvaI | CCWGG | 6 cut(s) | 124, 336, 894, 1844, 2020, 2048 |
| MvnI | CGCG | 1 cut(s) | 1771 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 237, 530, 586, 605, 935, 944, 2000 |
| NaeI | GCCGGC | 1 cut(s) | 651 |
| NarI | GGCGCC | 1 cut(s) | 545 |
| NciI | CCSGG | 5 cut(s) | 158, 233, 304, 613, 1881 |
| NcoI | CCATGG | 1 cut(s) | 1725 |
| NdeI | CATATG | 2 cut(s) | 1483, 2010 |
| NdeII | GATC | 4 cut(s) | 222, 574, 1209, 2005 |
| NgoMIV | GCCGGC | 1 cut(s) | 649 |
| NheI | GCTAGC | 1 cut(s) | 1870 |
| NlaIII | CATG | 8 cut(s) | 231, 967, 979, 1307, 1324, 1584, 1729, 2059 |
| NmeAIII | GCCGAG | 3 cut(s) | 516, 524, 1538 |
| NmuCI | GTSAC | 4 cut(s) | 190, 733, 1064, 1943 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 1584, 2059 |
| NspV | TTCGAA | 1 cut(s) | 1739 |
| PaeR7I | CTCGAG | 1 cut(s) | 803 |
| PagI | TCATGA | 2 cut(s) | 963, 1303 |
| PciI | ACATGT | 1 cut(s) | 1580 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1438, 1656 |
| PdiI | GCCGGC | 1 cut(s) | 651 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1152 |
| PfeI | GAWTC | 6 cut(s) | 165, 214, 299, 1593, 1661, 1914 |
| PfoI | TCCNGGA | 2 cut(s) | 122, 302 |
| PinAI | ACCGGT | 1 cut(s) | 177 |
| PleI | GAGTC | 5 cut(s) | 135, 1061, 1408, 1547, 1798 |
| PluTI | GGCGCC | 1 cut(s) | 548 |
| PmaCI | CACGTG | 1 cut(s) | 455 |
| PmlI | CACGTG | 1 cut(s) | 455 |
| PpsI | GAGTC | 5 cut(s) | 135, 1061, 1408, 1547, 1798 |
| Ppu21I | YACGTR | 1 cut(s) | 455 |
| PscI | ACATGT | 1 cut(s) | 1580 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1950 |
| PsiI | TTATAA | 1 cut(s) | 1140 |
| Psp124BI | GAGCTC | 1 cut(s) | 1311 |
| Psp1406I | AACGTT | 1 cut(s) | 1059 |
| Psp6I | CCWGG | 6 cut(s) | 122, 334, 892, 1842, 2018, 2046 |
| PspCI | CACGTG | 1 cut(s) | 455 |
| PspGI | CCWGG | 6 cut(s) | 122, 334, 892, 1842, 2018, 2046 |
| PspPI | GGNCC | 6 cut(s) | 28, 430, 464, 835, 1478, 1882 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2026, 2058 |
| PstI | CTGCAG | 1 cut(s) | 2005 |
| PsuI | RGATCY | 1 cut(s) | 222 |
| PvuII | CAGCTG | 1 cut(s) | 461 |
| RsaI | GTAC | 2 cut(s) | 286, 1092 |
| RsaNI | GTAC | 2 cut(s) | 285, 1091 |
| RseI | CAYNNNNRTG | 1 cut(s) | 978 |
| SacI | GAGCTC | 1 cut(s) | 1311 |
| SaqAI | TTAA | 2 cut(s) | 858, 2052 |
| Sau3AI | GATC | 4 cut(s) | 222, 574, 1209, 2005 |
| Sau96I | GGNCC | 6 cut(s) | 28, 430, 464, 835, 1478, 1882 |
| SchI | GAGTC | 5 cut(s) | 136, 1061, 1409, 1548, 1798 |
| SduI | GDGCHC | 4 cut(s) | 909, 1311, 1420, 1528 |
| SfaNI | GCATC | 4 cut(s) | 288, 617, 754, 1801 |
| SfcI | CTRYAG | 2 cut(s) | 1408, 2001 |
| SfoI | GGCGCC | 1 cut(s) | 546 |
| Sfr274I | CTCGAG | 1 cut(s) | 803 |
| SfuI | TTCGAA | 1 cut(s) | 1739 |
| SgrAI | CRCCGGYG | 1 cut(s) | 649 |
| SinI | GGWCC | 2 cut(s) | 835, 1478 |
| SlaI | CTCGAG | 1 cut(s) | 803 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 978 |
| SmlI | CTYRAG | 3 cut(s) | 803, 857, 1040 |
| SmoI | CTYRAG | 3 cut(s) | 803, 857, 1040 |
| Sse9I | AATT | 7 cut(s) | 57, 68, 870, 957, 1251, 1261, 1462 |
| SspDI | GGCGCC | 1 cut(s) | 544 |
| SspI | AATATT | 1 cut(s) | 1633 |
| SspMI | CTAG | 5 cut(s) | 549, 1371, 1871, 1910, 2039 |
| SstI | GAGCTC | 1 cut(s) | 1311 |
| StyI | CCWWGG | 1 cut(s) | 1725 |
| TaaI | ACNGT | 1 cut(s) | 1535 |
| TaqI | TCGA | 8 cut(s) | 804, 915, 1212, 1591, 1620, 1659, 1739, 1969 |
| TaqII | GACCGA | 1 cut(s) | 626 |
| TasI | AATT | 7 cut(s) | 57, 68, 870, 957, 1251, 1261, 1462 |
| TauI | GCSGC | 6 cut(s) | 29, 101, 498, 514, 649, 1682 |
| TfiI | GAWTC | 6 cut(s) | 165, 214, 299, 1593, 1661, 1914 |
| Tru1I | TTAA | 2 cut(s) | 858, 2052 |
| Tru9I | TTAA | 2 cut(s) | 858, 2052 |
| TscAI | CASTG | 3 cut(s) | 601, 1691, 1948 |
| TseFI | GTSAC | 4 cut(s) | 190, 733, 1064, 1943 |
| TseI | GCWGC | 5 cut(s) | 145, 367, 458, 1045, 1994 |
| Tsp45I | GTSAC | 4 cut(s) | 190, 733, 1064, 1943 |
| TspDTI | ATGAA | 6 cut(s) | 992, 1011, 1292, 1296, 1337, 1747 |
| TspGWI | ACGGA | 2 cut(s) | 238, 1340 |
| TspRI | CASTG | 3 cut(s) | 601, 1691, 1948 |
| Vha464I | CTTAAG | 1 cut(s) | 857 |
| VneI | GTGCAC | 1 cut(s) | 1524 |
| VpaK11BI | GGWCC | 2 cut(s) | 835, 1478 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1007 |
| XapI | RAATTY | 3 cut(s) | 57, 68, 870 |
| XceI | RCATGY | 2 cut(s) | 1584, 2059 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1026, 1723 |
| XhoI | CTCGAG | 1 cut(s) | 803 |
| XmiI | GTMKAC | 1 cut(s) | 1577 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1152 |
| XspI | CTAG | 5 cut(s) | 549, 1371, 1871, 1910, 2039 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |