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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 282 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 629 |
| AccII | CGCG | 1 cut(s) | 558 |
| AclI | AACGTT | 1 cut(s) | 201 |
| AcoI | YGGCCR | 1 cut(s) | 325 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 151, 569, 629, 640 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 3 cut(s) | 22, 265, 399 |
| AluBI | AGCT | 3 cut(s) | 169, 293, 451 |
| AluI | AGCT | 3 cut(s) | 169, 293, 451 |
| Alw21I | GWGCWC | 1 cut(s) | 670 |
| Alw26I | GTCTC | 3 cut(s) | 32, 312, 385 |
| Alw44I | GTGCAC | 1 cut(s) | 666 |
| AoxI | GGCC | 2 cut(s) | 325, 631 |
| ApaLI | GTGCAC | 1 cut(s) | 666 |
| ApeKI | GCWGC | 1 cut(s) | 187 |
| AspLEI | GCGC | 3 cut(s) | 50, 81, 560 |
| AspS9I | GGNCC | 2 cut(s) | 67, 632 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BaeGI | GKGCMC | 1 cut(s) | 670 |
| BalI | TGGCCA | 1 cut(s) | 327 |
| BbsI | GAAGAC | 2 cut(s) | 162, 365 |
| Bbv12I | GWGCWC | 1 cut(s) | 670 |
| BbvI | GCAGC | 1 cut(s) | 199 |
| BccI | CCATC | 4 cut(s) | 92, 122, 231, 307 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 3 cut(s) | 32, 312, 385 |
| BfaI | CTAG | 2 cut(s) | 513, 618 |
| BfmI | CTRYAG | 1 cut(s) | 550 |
| BfoI | RGCGCY | 1 cut(s) | 51 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 188 |
| BlsI | GCNGC | 1 cut(s) | 189 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 632 |
| BmiI | GGNNCC | 3 cut(s) | 68, 460, 674 |
| BpiI | GAAGAC | 2 cut(s) | 162, 365 |
| BpuEI | CTTGAG | 1 cut(s) | 203 |
| BsaBI | GATNNNNATC | 1 cut(s) | 350 |
| BsaJI | CCNNGG | 4 cut(s) | 32, 519, 564, 676 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 151, 569, 629, 640 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 1 cut(s) | 350 |
| BseDI | CCNNGG | 4 cut(s) | 32, 519, 564, 676 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 1 cut(s) | 350 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 151, 569, 629, 640 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 670 |
| BseXI | GCAGC | 1 cut(s) | 199 |
| Bsh1236I | CGCG | 1 cut(s) | 558 |
| BshFI | GGCC | 2 cut(s) | 327, 633 |
| BsiHKAI | GWGCWC | 1 cut(s) | 670 |
| BslFI | GGGAC | 1 cut(s) | 614 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 151, 569, 629, 640 |
| BsmAI | GTCTC | 3 cut(s) | 32, 312, 385 |
| BsmBI | CGTCTC | 1 cut(s) | 385 |
| BsmFI | GGGAC | 1 cut(s) | 614 |
| BsnI | GGCC | 2 cut(s) | 327, 633 |
| Bsp1286I | GDGCHC | 1 cut(s) | 670 |
| Bsp143I | GATC | 1 cut(s) | 351 |
| Bsp19I | CCATGG | 1 cut(s) | 519 |
| BspANI | GGCC | 2 cut(s) | 327, 633 |
| BspFNI | CGCG | 1 cut(s) | 558 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 3 cut(s) | 68, 460, 674 |
| BspQI | GCTCTTC | 1 cut(s) | 300 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 4 cut(s) | 32, 519, 564, 676 |
| BssMI | GATC | 1 cut(s) | 351 |
| BssT1I | CCWWGG | 2 cut(s) | 519, 564 |
| Bst4CI | ACNGT | 1 cut(s) | 677 |
| Bst6I | CTCTTC | 1 cut(s) | 300 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 666 |
| BstDEI | CTNAG | 3 cut(s) | 161, 528, 591 |
| BstDSI | CCRYGG | 3 cut(s) | 32, 519, 676 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 149 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 1 cut(s) | 558 |
| BstH2I | RGCGCY | 1 cut(s) | 51 |
| BstHHI | GCGC | 3 cut(s) | 50, 81, 560 |
| BstKTI | GATC | 1 cut(s) | 354 |
| BstMAI | GTCTC | 3 cut(s) | 32, 312, 385 |
| BstMBI | GATC | 1 cut(s) | 351 |
| BstSFI | CTRYAG | 1 cut(s) | 550 |
| BstSLI | GKGCMC | 1 cut(s) | 670 |
| BstUI | CGCG | 1 cut(s) | 558 |
| BstV1I | GCAGC | 1 cut(s) | 199 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 365 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 2 cut(s) | 327, 633 |
| BtgI | CCRYGG | 3 cut(s) | 32, 519, 676 |
| BtgZI | GCGATG | 1 cut(s) | 250 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 1 cut(s) | 666 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 3 cut(s) | 50, 81, 560 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 632 |
| CseI | GACGC | 1 cut(s) | 582 |
| CviAII | CATG | 3 cut(s) | 446, 463, 520 |
| DdeI | CTNAG | 3 cut(s) | 161, 528, 591 |
| DpnI | GATC | 1 cut(s) | 353 |
| DpnII | GATC | 1 cut(s) | 351 |
| EaeI | YGGCCR | 1 cut(s) | 325 |
| Eam1104I | CTCTTC | 1 cut(s) | 300 |
| EarI | CTCTTC | 1 cut(s) | 300 |
| Eco130I | CCWWGG | 2 cut(s) | 519, 564 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 149 |
| EcoT14I | CCWWGG | 2 cut(s) | 519, 564 |
| ErhI | CCWWGG | 2 cut(s) | 519, 564 |
| Esp3I | CGTCTC | 1 cut(s) | 385 |
| FaeI | CATG | 3 cut(s) | 449, 466, 523 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 614 |
| FatI | CATG | 3 cut(s) | 445, 462, 519 |
| Fnu4HI | GCNGC | 1 cut(s) | 188 |
| FokI | GGATG | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 1 cut(s) | 188 |
| FspBI | CTAG | 2 cut(s) | 513, 618 |
| GlaI | GCGC | 3 cut(s) | 49, 80, 559 |
| GluI | GCNGC | 1 cut(s) | 188 |
| HaeII | RGCGCY | 1 cut(s) | 51 |
| HaeIII | GGCC | 2 cut(s) | 327, 633 |
| HgaI | GACGC | 1 cut(s) | 582 |
| HhaI | GCGC | 3 cut(s) | 50, 81, 560 |
| Hin1II | CATG | 3 cut(s) | 449, 466, 523 |
| Hin6I | GCGC | 3 cut(s) | 48, 79, 558 |
| HinP1I | GCGC | 3 cut(s) | 48, 79, 558 |
| HinfI | GANTC | 2 cut(s) | 361, 542 |
| Hpy166II | GTNNAC | 1 cut(s) | 668 |
| Hpy188I | TCNGA | 3 cut(s) | 71, 312, 411 |
| Hpy188III | TCNNGA | 5 cut(s) | 206, 221, 355, 446, 539 |
| Hpy8I | GTNNAC | 1 cut(s) | 668 |
| HpyAV | CCTTC | 3 cut(s) | 382, 419, 638 |
| HpyCH4III | ACNGT | 1 cut(s) | 677 |
| HpyCH4IV | ACGT | 3 cut(s) | 201, 430, 468 |
| HpyCH4V | TGCA | 1 cut(s) | 668 |
| HpyF3I | CTNAG | 3 cut(s) | 161, 528, 591 |
| HpySE526I | ACGT | 3 cut(s) | 201, 430, 468 |
| Hsp92II | CATG | 3 cut(s) | 449, 466, 523 |
| HspAI | GCGC | 3 cut(s) | 48, 79, 558 |
| Kzo9I | GATC | 1 cut(s) | 351 |
| LguI | GCTCTTC | 1 cut(s) | 300 |
| LmnI | GCTCC | 3 cut(s) | 135, 458, 580 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 36, 227, 234, 401, 552, 594, 615 |
| Lsp1109I | GCAGC | 1 cut(s) | 199 |
| MaeI | CTAG | 2 cut(s) | 513, 618 |
| MaeII | ACGT | 3 cut(s) | 201, 430, 468 |
| MaeIII | GTNAC | 2 cut(s) | 5, 206 |
| MalI | GATC | 1 cut(s) | 353 |
| MboI | GATC | 1 cut(s) | 351 |
| MboII | GAAGA | 4 cut(s) | 167, 287, 370, 511 |
| MhlI | GDGCHC | 1 cut(s) | 670 |
| MlsI | TGGCCA | 1 cut(s) | 327 |
| MluCI | AATT | 2 cut(s) | 403, 604 |
| MluNI | TGGCCA | 1 cut(s) | 327 |
| MlyI | GAGTC | 2 cut(s) | 355, 551 |
| MnlI | CCTC | 8 cut(s) | 145, 155, 257, 386, 563, 634, 654, 674 |
| Mox20I | TGGCCA | 1 cut(s) | 327 |
| MscI | TGGCCA | 1 cut(s) | 327 |
| MseI | TTAA | 2 cut(s) | 90, 685 |
| MslI | CAYNNNNRTG | 1 cut(s) | 494 |
| Msp20I | TGGCCA | 1 cut(s) | 327 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MvnI | CGCG | 1 cut(s) | 558 |
| NcoI | CCATGG | 1 cut(s) | 519 |
| NdeII | GATC | 1 cut(s) | 351 |
| NlaIII | CATG | 3 cut(s) | 449, 466, 523 |
| NlaIV | GGNNCC | 3 cut(s) | 68, 460, 674 |
| NmuCI | GTSAC | 1 cut(s) | 206 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PciSI | GCTCTTC | 1 cut(s) | 300 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 580 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 629 |
| PkrI | GCNGC | 1 cut(s) | 189 |
| PleI | GAGTC | 2 cut(s) | 355, 550 |
| PpsI | GAGTC | 2 cut(s) | 355, 550 |
| PsiI | TTATAA | 1 cut(s) | 282 |
| Psp1406I | AACGTT | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 3 cut(s) | 68, 460, 674 |
| PspPI | GGNCC | 2 cut(s) | 67, 632 |
| RseI | CAYNNNNRTG | 1 cut(s) | 494 |
| SapI | GCTCTTC | 1 cut(s) | 300 |
| SaqAI | TTAA | 2 cut(s) | 90, 685 |
| SatI | GCNGC | 1 cut(s) | 188 |
| Sau3AI | GATC | 1 cut(s) | 351 |
| Sau96I | GGNCC | 2 cut(s) | 67, 632 |
| SchI | GAGTC | 2 cut(s) | 355, 551 |
| SduI | GDGCHC | 1 cut(s) | 670 |
| SfcI | CTRYAG | 1 cut(s) | 550 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 494 |
| SmlI | CTYRAG | 2 cut(s) | 89, 182 |
| SmoI | CTYRAG | 2 cut(s) | 89, 182 |
| Sse9I | AATT | 2 cut(s) | 403, 604 |
| SspMI | CTAG | 2 cut(s) | 513, 618 |
| StyI | CCWWGG | 2 cut(s) | 519, 564 |
| TaaI | ACNGT | 1 cut(s) | 677 |
| TaiI | ACGT | 3 cut(s) | 204, 433, 471 |
| TaqI | TCGA | 2 cut(s) | 287, 354 |
| TasI | AATT | 2 cut(s) | 403, 604 |
| Tru1I | TTAA | 2 cut(s) | 90, 685 |
| Tru9I | TTAA | 2 cut(s) | 90, 685 |
| TseFI | GTSAC | 1 cut(s) | 206 |
| TseI | GCWGC | 1 cut(s) | 187 |
| Tsp45I | GTSAC | 1 cut(s) | 206 |
| TspDTI | ATGAA | 2 cut(s) | 434, 479 |
| TspGWI | ACGGA | 1 cut(s) | 685 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 629 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 666 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 149 |
| XspI | CTAG | 2 cut(s) | 513, 618 |