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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 1 cut(s) | 113 |
| AccII | CGCG | 1 cut(s) | 213 |
| AccIII | TCCGGA | 2 cut(s) | 193, 386 |
| AcyI | GRCGYC | 1 cut(s) | 114 |
| AfaI | GTAC | 1 cut(s) | 321 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 224, 294, 393 |
| AluBI | AGCT | 2 cut(s) | 106, 128 |
| AluI | AGCT | 2 cut(s) | 106, 128 |
| Alw26I | GTCTC | 2 cut(s) | 40, 527 |
| Aor13HI | TCCGGA | 2 cut(s) | 193, 386 |
| AoxI | GGCC | 2 cut(s) | 396, 526 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 17 |
| AspLEI | GCGC | 2 cut(s) | 116, 215 |
| AspS9I | GGNCC | 3 cut(s) | 275, 396, 526 |
| AvaII | GGWCC | 1 cut(s) | 275 |
| BanI | GGYRCC | 1 cut(s) | 113 |
| BbsI | GAAGAC | 3 cut(s) | 20, 362, 522 |
| BciVI | GTATCC | 1 cut(s) | 424 |
| BcoDI | GTCTC | 2 cut(s) | 40, 527 |
| BfaI | CTAG | 1 cut(s) | 168 |
| BfoI | RGCGCY | 1 cut(s) | 117 |
| BfuI | GTATCC | 1 cut(s) | 424 |
| Bme18I | GGWCC | 1 cut(s) | 275 |
| BmgT120I | GGNCC | 3 cut(s) | 275, 396, 526 |
| BmiI | GGNNCC | 3 cut(s) | 115, 181, 348 |
| BmsI | GCATC | 3 cut(s) | 96, 352, 421 |
| BpiI | GAAGAC | 3 cut(s) | 20, 362, 522 |
| BsaBI | GATNNNNATC | 1 cut(s) | 495 |
| BsaHI | GRCGYC | 1 cut(s) | 114 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| BsaWI | WCCGGW | 2 cut(s) | 193, 386 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 224, 294, 393 |
| Bse1I | ACTGG | 1 cut(s) | 541 |
| Bse8I | GATNNNNATC | 1 cut(s) | 495 |
| BseAI | TCCGGA | 2 cut(s) | 193, 386 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseJI | GATNNNNATC | 1 cut(s) | 495 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 224, 294, 393 |
| BseMII | CTCAG | 1 cut(s) | 120 |
| BseNI | ACTGG | 1 cut(s) | 541 |
| BsgI | GTGCAG | 1 cut(s) | 24 |
| Bsh1236I | CGCG | 1 cut(s) | 213 |
| BshFI | GGCC | 2 cut(s) | 398, 528 |
| BshNI | GGYRCC | 1 cut(s) | 113 |
| BsiSI | CCGG | 2 cut(s) | 194, 387 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 224, 294, 393 |
| BsmAI | GTCTC | 2 cut(s) | 40, 527 |
| BsmBI | CGTCTC | 1 cut(s) | 40 |
| BsnI | GGCC | 2 cut(s) | 398, 528 |
| Bsp13I | TCCGGA | 2 cut(s) | 193, 386 |
| Bsp143I | GATC | 2 cut(s) | 484, 496 |
| BspANI | GGCC | 2 cut(s) | 398, 528 |
| BspCNI | CTCAG | 1 cut(s) | 121 |
| BspEI | TCCGGA | 2 cut(s) | 193, 386 |
| BspFNI | CGCG | 1 cut(s) | 213 |
| BspHI | TCATGA | 1 cut(s) | 100 |
| BspLI | GGNNCC | 3 cut(s) | 115, 181, 348 |
| BspT107I | GGYRCC | 1 cut(s) | 113 |
| BsrI | ACTGG | 1 cut(s) | 541 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| BssMI | GATC | 2 cut(s) | 484, 496 |
| BssNI | GRCGYC | 1 cut(s) | 114 |
| BssT1I | CCWWGG | 1 cut(s) | 219 |
| Bst4CI | ACNGT | 1 cut(s) | 331 |
| BstACI | GRCGYC | 1 cut(s) | 114 |
| BstDEI | CTNAG | 3 cut(s) | 129, 246, 506 |
| BstFNI | CGCG | 1 cut(s) | 213 |
| BstH2I | RGCGCY | 1 cut(s) | 117 |
| BstHHI | GCGC | 2 cut(s) | 116, 215 |
| BstKTI | GATC | 2 cut(s) | 487, 499 |
| BstMAI | GTCTC | 2 cut(s) | 40, 527 |
| BstMBI | GATC | 2 cut(s) | 484, 496 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 440, 461 |
| BstUI | CGCG | 1 cut(s) | 213 |
| BstV2I | GAAGAC | 3 cut(s) | 20, 362, 522 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 536 |
| BsuI | GTATCC | 1 cut(s) | 424 |
| BsuRI | GGCC | 2 cut(s) | 398, 528 |
| BtsIMutI | CAGTG | 2 cut(s) | 41, 336 |
| CciI | TCATGA | 1 cut(s) | 100 |
| CfoI | GCGC | 2 cut(s) | 116, 215 |
| Cfr13I | GGNCC | 3 cut(s) | 275, 396, 526 |
| CseI | GACGC | 1 cut(s) | 372 |
| Csp6I | GTAC | 1 cut(s) | 320 |
| CviAII | CATG | 6 cut(s) | 101, 118, 343, 405, 472, 523 |
| CviJI | RGCY | 5 cut(s) | 106, 128, 349, 398, 528 |
| CviKI_1 | RGCY | 5 cut(s) | 106, 128, 349, 398, 528 |
| CviQI | GTAC | 1 cut(s) | 320 |
| DdeI | CTNAG | 3 cut(s) | 129, 246, 506 |
| DinI | GGCGCC | 1 cut(s) | 115 |
| DpnI | GATC | 2 cut(s) | 486, 498 |
| DpnII | GATC | 2 cut(s) | 484, 496 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 273 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 273 |
| Eco130I | CCWWGG | 1 cut(s) | 219 |
| Eco47I | GGWCC | 1 cut(s) | 275 |
| EcoT14I | CCWWGG | 1 cut(s) | 219 |
| EcoT22I | ATGCAT | 1 cut(s) | 436 |
| EgeI | GGCGCC | 1 cut(s) | 115 |
| EheI | GGCGCC | 1 cut(s) | 115 |
| ErhI | CCWWGG | 1 cut(s) | 219 |
| Esp3I | CGTCTC | 1 cut(s) | 40 |
| FaeI | CATG | 6 cut(s) | 104, 121, 346, 408, 475, 526 |
| FatI | CATG | 6 cut(s) | 100, 117, 342, 404, 471, 522 |
| FspBI | CTAG | 1 cut(s) | 168 |
| GlaI | GCGC | 2 cut(s) | 115, 214 |
| HaeII | RGCGCY | 1 cut(s) | 117 |
| HaeIII | GGCC | 2 cut(s) | 398, 528 |
| HapII | CCGG | 2 cut(s) | 194, 387 |
| HgaI | GACGC | 1 cut(s) | 372 |
| HhaI | GCGC | 2 cut(s) | 116, 215 |
| Hin1I | GRCGYC | 1 cut(s) | 114 |
| Hin1II | CATG | 6 cut(s) | 104, 121, 346, 408, 475, 526 |
| Hin6I | GCGC | 2 cut(s) | 114, 213 |
| HinP1I | GCGC | 2 cut(s) | 114, 213 |
| HincII | GTYRAC | 1 cut(s) | 340 |
| HindII | GTYRAC | 1 cut(s) | 340 |
| HinfI | GANTC | 1 cut(s) | 197 |
| HpaII | CCGG | 2 cut(s) | 194, 387 |
| Hpy166II | GTNNAC | 2 cut(s) | 322, 340 |
| Hpy188I | TCNGA | 1 cut(s) | 66 |
| Hpy188III | TCNNGA | 8 cut(s) | 10, 101, 168, 194, 264, 387, 449, 488 |
| Hpy8I | GTNNAC | 2 cut(s) | 322, 340 |
| HpyAV | CCTTC | 2 cut(s) | 37, 292 |
| HpyCH4III | ACNGT | 1 cut(s) | 331 |
| HpyCH4IV | ACGT | 2 cut(s) | 123, 268 |
| HpyCH4V | TGCA | 4 cut(s) | 41, 53, 428, 434 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 440, 461 |
| HpyF3I | CTNAG | 3 cut(s) | 129, 246, 506 |
| HpySE526I | ACGT | 2 cut(s) | 123, 268 |
| Hsp92I | GRCGYC | 1 cut(s) | 114 |
| Hsp92II | CATG | 6 cut(s) | 104, 121, 346, 408, 475, 526 |
| HspAI | GCGC | 2 cut(s) | 114, 213 |
| KasI | GGCGCC | 1 cut(s) | 113 |
| Kpn2I | TCCGGA | 2 cut(s) | 193, 386 |
| Kzo9I | GATC | 2 cut(s) | 484, 496 |
| LmnI | GCTCC | 3 cut(s) | 346, 380, 475 |
| LpnPI | CCDG | 6 cut(s) | 186, 207, 249, 258, 400, 522 |
| LweI | GCATC | 3 cut(s) | 96, 352, 421 |
| MaeI | CTAG | 1 cut(s) | 168 |
| MaeII | ACGT | 2 cut(s) | 123, 268 |
| MalI | GATC | 2 cut(s) | 486, 498 |
| MboI | GATC | 2 cut(s) | 484, 496 |
| MboII | GAAGA | 5 cut(s) | 25, 166, 362, 494, 527 |
| MluCI | AATT | 3 cut(s) | 58, 202, 259 |
| Mly113I | GGCGCC | 1 cut(s) | 114 |
| MlyI | GAGTC | 1 cut(s) | 206 |
| MnlI | CCTC | 3 cut(s) | 218, 288, 328 |
| Mph1103I | ATGCAT | 1 cut(s) | 436 |
| MroI | TCCGGA | 2 cut(s) | 193, 386 |
| MroXI | GAANNNNTTC | 1 cut(s) | 17 |
| MseI | TTAA | 2 cut(s) | 5, 550 |
| MslI | CAYNNNNRTG | 1 cut(s) | 360 |
| MspI | CCGG | 2 cut(s) | 194, 387 |
| MvnI | CGCG | 1 cut(s) | 213 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 440, 461 |
| NarI | GGCGCC | 1 cut(s) | 114 |
| NdeII | GATC | 2 cut(s) | 484, 496 |
| NlaIII | CATG | 6 cut(s) | 104, 121, 346, 408, 475, 526 |
| NlaIV | GGNNCC | 3 cut(s) | 115, 181, 348 |
| NsiI | ATGCAT | 1 cut(s) | 436 |
| PagI | TCATGA | 1 cut(s) | 100 |
| PdmI | GAANNNNTTC | 1 cut(s) | 17 |
| PleI | GAGTC | 1 cut(s) | 205 |
| PluTI | GGCGCC | 1 cut(s) | 117 |
| PpsI | GAGTC | 1 cut(s) | 205 |
| PspN4I | GGNNCC | 3 cut(s) | 115, 181, 348 |
| PspPI | GGNCC | 3 cut(s) | 275, 396, 526 |
| RsaI | GTAC | 1 cut(s) | 321 |
| RsaNI | GTAC | 1 cut(s) | 320 |
| RseI | CAYNNNNRTG | 1 cut(s) | 360 |
| SaqAI | TTAA | 2 cut(s) | 5, 550 |
| Sau3AI | GATC | 2 cut(s) | 484, 496 |
| Sau96I | GGNCC | 3 cut(s) | 275, 396, 526 |
| SchI | GAGTC | 1 cut(s) | 206 |
| SetI | ASST | 9 cut(s) | 29, 98, 108, 126, 130, 175, 271, 277, 339 |
| SfaNI | GCATC | 3 cut(s) | 96, 352, 421 |
| SfoI | GGCGCC | 1 cut(s) | 115 |
| SinI | GGWCC | 1 cut(s) | 275 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 360 |
| Sse9I | AATT | 3 cut(s) | 58, 202, 259 |
| SspDI | GGCGCC | 1 cut(s) | 113 |
| SspMI | CTAG | 1 cut(s) | 168 |
| StyI | CCWWGG | 1 cut(s) | 219 |
| TaaI | ACNGT | 1 cut(s) | 331 |
| TaiI | ACGT | 2 cut(s) | 126, 271 |
| TaqI | TCGA | 2 cut(s) | 9, 373 |
| TasI | AATT | 3 cut(s) | 58, 202, 259 |
| Tru1I | TTAA | 2 cut(s) | 5, 550 |
| Tru9I | TTAA | 2 cut(s) | 5, 550 |
| TscAI | CASTG | 2 cut(s) | 48, 336 |
| TspDTI | ATGAA | 3 cut(s) | 89, 134, 511 |
| TspGWI | ACGGA | 1 cut(s) | 339 |
| TspRI | CASTG | 2 cut(s) | 48, 336 |
| VpaK11BI | GGWCC | 1 cut(s) | 275 |
| XbaI | TCTAGA | 1 cut(s) | 167 |
| XmnI | GAANNNNTTC | 1 cut(s) | 17 |
| XspI | CTAG | 1 cut(s) | 168 |
| Zsp2I | ATGCAT | 1 cut(s) | 436 |