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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 587, 662, 743 |
| AccII | CGCG | 1 cut(s) | 414 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 2 cut(s) | 106, 666 |
| AclWI | GGATC | 1 cut(s) | 470 |
| AcoI | YGGCCR | 1 cut(s) | 574 |
| AcsI | RAATTY | 1 cut(s) | 811 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 425, 688, 692 |
| AgsI | TTSAA | 3 cut(s) | 121, 625, 779 |
| AjnI | CCWGG | 1 cut(s) | 748 |
| AluBI | AGCT | 2 cut(s) | 307, 317 |
| AluI | AGCT | 2 cut(s) | 307, 317 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| Alw26I | GTCTC | 1 cut(s) | 241 |
| AlwI | GGATC | 1 cut(s) | 470 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AoxI | GGCC | 2 cut(s) | 574, 800 |
| ApeKI | GCWGC | 1 cut(s) | 758 |
| ApoI | RAATTY | 1 cut(s) | 811 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspA2I | CCTAGG | 1 cut(s) | 686 |
| AspLEI | GCGC | 3 cut(s) | 416, 590, 631 |
| AspS9I | GGNCC | 1 cut(s) | 372 |
| AsuHPI | GGTGA | 3 cut(s) | 749, 757, 764 |
| AvaII | GGWCC | 1 cut(s) | 372 |
| AvrII | CCTAGG | 1 cut(s) | 686 |
| BaeGI | GKGCMC | 1 cut(s) | 748 |
| BalI | TGGCCA | 1 cut(s) | 576 |
| BanI | GGYRCC | 3 cut(s) | 587, 662, 743 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BbvI | GCAGC | 1 cut(s) | 745 |
| BccI | CCATC | 5 cut(s) | 87, 241, 653, 734, 738 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciT130I | CCWGG | 1 cut(s) | 750 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BcoDI | GTCTC | 1 cut(s) | 241 |
| BfaI | CTAG | 3 cut(s) | 83, 131, 687 |
| BfoI | RGCGCY | 2 cut(s) | 591, 632 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BisI | GCNGC | 1 cut(s) | 759 |
| BlnI | CCTAGG | 1 cut(s) | 686 |
| BlsI | GCNGC | 1 cut(s) | 760 |
| Bme1390I | CCNGG | 1 cut(s) | 750 |
| Bme18I | GGWCC | 1 cut(s) | 372 |
| BmgT120I | GGNCC | 1 cut(s) | 372 |
| BmiI | GGNNCC | 4 cut(s) | 530, 589, 664, 745 |
| BmrFI | CCNGG | 1 cut(s) | 750 |
| BmsI | GCATC | 2 cut(s) | 262, 745 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaJI | CCNNGG | 4 cut(s) | 375, 686, 717, 748 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 425, 688, 692 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseBI | CCWGG | 1 cut(s) | 750 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 4 cut(s) | 375, 686, 717, 748 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 425, 688, 692 |
| BseMII | CTCAG | 1 cut(s) | 811 |
| BseSI | GKGCMC | 1 cut(s) | 748 |
| BseXI | GCAGC | 1 cut(s) | 745 |
| Bsh1236I | CGCG | 1 cut(s) | 414 |
| BshFI | GGCC | 2 cut(s) | 576, 802 |
| BshNI | GGYRCC | 3 cut(s) | 587, 662, 743 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BslFI | GGGAC | 2 cut(s) | 686, 845 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 425, 688, 692 |
| BsmAI | GTCTC | 1 cut(s) | 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsmFI | GGGAC | 2 cut(s) | 686, 845 |
| BsnI | GGCC | 2 cut(s) | 576, 802 |
| Bsp1286I | GDGCHC | 2 cut(s) | 309, 748 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 2 cut(s) | 189, 475 |
| Bsp19I | CCATGG | 1 cut(s) | 717 |
| BspACI | CCGC | 2 cut(s) | 106, 666 |
| BspANI | GGCC | 2 cut(s) | 576, 802 |
| BspCNI | CTCAG | 1 cut(s) | 810 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspFNI | CGCG | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 4 cut(s) | 530, 589, 664, 745 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BspT107I | GGYRCC | 3 cut(s) | 587, 662, 743 |
| BssECI | CCNNGG | 4 cut(s) | 375, 686, 717, 748 |
| BssMI | GATC | 2 cut(s) | 189, 475 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| BssT1I | CCWWGG | 2 cut(s) | 686, 717 |
| Bst2UI | CCWGG | 1 cut(s) | 750 |
| Bst4CI | ACNGT | 1 cut(s) | 700 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstC8I | GCNNGC | 1 cut(s) | 694 |
| BstDEI | CTNAG | 5 cut(s) | 255, 452, 600, 797, 864 |
| BstDSI | CCRYGG | 2 cut(s) | 375, 717 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstFNI | CGCG | 1 cut(s) | 414 |
| BstH2I | RGCGCY | 2 cut(s) | 591, 632 |
| BstHHI | GCGC | 3 cut(s) | 416, 590, 631 |
| BstKTI | GATC | 2 cut(s) | 192, 478 |
| BstMAI | GTCTC | 1 cut(s) | 241 |
| BstMBI | GATC | 2 cut(s) | 189, 475 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 626, 832 |
| BstNI | CCWGG | 1 cut(s) | 750 |
| BstSCI | CCNGG | 1 cut(s) | 748 |
| BstSLI | GKGCMC | 1 cut(s) | 748 |
| BstUI | CGCG | 1 cut(s) | 414 |
| BstV1I | GCAGC | 1 cut(s) | 745 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuRI | GGCC | 2 cut(s) | 576, 802 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 2 cut(s) | 375, 717 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| Cac8I | GCNNGC | 1 cut(s) | 694 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 3 cut(s) | 416, 590, 631 |
| Cfr13I | GGNCC | 1 cut(s) | 372 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 715 |
| CviAII | CATG | 6 cut(s) | 302, 338, 578, 710, 718, 734 |
| DdeI | CTNAG | 5 cut(s) | 255, 452, 600, 797, 864 |
| DinI | GGCGCC | 1 cut(s) | 589 |
| DpnI | GATC | 2 cut(s) | 191, 477 |
| DpnII | GATC | 2 cut(s) | 189, 475 |
| EaeI | YGGCCR | 1 cut(s) | 574 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco130I | CCWWGG | 2 cut(s) | 686, 717 |
| Eco147I | AGGCCT | 1 cut(s) | 802 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco47I | GGWCC | 1 cut(s) | 372 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoRII | CCWGG | 1 cut(s) | 748 |
| EcoT14I | CCWWGG | 2 cut(s) | 686, 717 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| EgeI | GGCGCC | 1 cut(s) | 589 |
| EheI | GGCGCC | 1 cut(s) | 589 |
| ErhI | CCWWGG | 2 cut(s) | 686, 717 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 6 cut(s) | 305, 341, 581, 713, 721, 737 |
| FaqI | GGGAC | 2 cut(s) | 686, 845 |
| FatI | CATG | 6 cut(s) | 301, 337, 577, 709, 717, 733 |
| Fnu4HI | GCNGC | 1 cut(s) | 759 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| Fsp4HI | GCNGC | 1 cut(s) | 759 |
| FspBI | CTAG | 3 cut(s) | 83, 131, 687 |
| GlaI | GCGC | 3 cut(s) | 415, 589, 630 |
| GluI | GCNGC | 1 cut(s) | 759 |
| HaeII | RGCGCY | 2 cut(s) | 591, 632 |
| HaeIII | GGCC | 2 cut(s) | 576, 802 |
| HapII | CCGG | 1 cut(s) | 395 |
| HgaI | GACGC | 1 cut(s) | 715 |
| HhaI | GCGC | 3 cut(s) | 416, 590, 631 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin1II | CATG | 6 cut(s) | 305, 341, 581, 713, 721, 737 |
| Hin6I | GCGC | 3 cut(s) | 414, 588, 629 |
| HinP1I | GCGC | 3 cut(s) | 414, 588, 629 |
| HincII | GTYRAC | 1 cut(s) | 542 |
| HindII | GTYRAC | 1 cut(s) | 542 |
| HinfI | GANTC | 7 cut(s) | 65, 217, 267, 288, 398, 604, 793 |
| HpaII | CCGG | 1 cut(s) | 395 |
| HphI | GGTGA | 3 cut(s) | 749, 757, 764 |
| Hpy166II | GTNNAC | 2 cut(s) | 542, 676 |
| Hpy188I | TCNGA | 3 cut(s) | 145, 475, 792 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 131, 302, 395, 465 |
| Hpy8I | GTNNAC | 2 cut(s) | 542, 676 |
| HpyAV | CCTTC | 2 cut(s) | 15, 494 |
| HpyCH4III | ACNGT | 1 cut(s) | 700 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 469, 544 |
| HpyCH4V | TGCA | 3 cut(s) | 242, 281, 761 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 626, 832 |
| HpyF3I | CTNAG | 5 cut(s) | 255, 452, 600, 797, 864 |
| HpySE526I | ACGT | 3 cut(s) | 57, 469, 544 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| Hsp92II | CATG | 6 cut(s) | 305, 341, 581, 713, 721, 737 |
| HspAI | GCGC | 3 cut(s) | 414, 588, 629 |
| KasI | GGCGCC | 1 cut(s) | 587 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Kzo9I | GATC | 2 cut(s) | 189, 475 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| Lsp1109I | GCAGC | 1 cut(s) | 745 |
| LweI | GCATC | 2 cut(s) | 262, 745 |
| MaeI | CTAG | 3 cut(s) | 83, 131, 687 |
| MaeII | ACGT | 3 cut(s) | 57, 469, 544 |
| MaeIII | GTNAC | 1 cut(s) | 62 |
| MalI | GATC | 2 cut(s) | 191, 477 |
| MboI | GATC | 2 cut(s) | 189, 475 |
| MboII | GAAGA | 5 cut(s) | 20, 23, 226, 367, 546 |
| MhlI | GDGCHC | 2 cut(s) | 309, 748 |
| MlsI | TGGCCA | 1 cut(s) | 576 |
| MluCI | AATT | 4 cut(s) | 173, 364, 403, 811 |
| MluNI | TGGCCA | 1 cut(s) | 576 |
| Mly113I | GGCGCC | 1 cut(s) | 588 |
| MlyI | GAGTC | 4 cut(s) | 59, 211, 613, 787 |
| Mox20I | TGGCCA | 1 cut(s) | 576 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 576 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 5 cut(s) | 350, 582, 612, 735, 738 |
| Msp20I | TGGCCA | 1 cut(s) | 576 |
| MspI | CCGG | 1 cut(s) | 395 |
| MspR9I | CCNGG | 1 cut(s) | 750 |
| MvaI | CCWGG | 1 cut(s) | 750 |
| MvnI | CGCG | 1 cut(s) | 414 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 626, 832 |
| NarI | GGCGCC | 1 cut(s) | 588 |
| NcoI | CCATGG | 1 cut(s) | 717 |
| NdeII | GATC | 2 cut(s) | 189, 475 |
| NlaIII | CATG | 6 cut(s) | 305, 341, 581, 713, 721, 737 |
| NlaIV | GGNNCC | 4 cut(s) | 530, 589, 664, 745 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PceI | AGGCCT | 1 cut(s) | 802 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 3 cut(s) | 267, 288, 398 |
| PflFI | GACNNNGTC | 1 cut(s) | 56 |
| PkrI | GCNGC | 1 cut(s) | 760 |
| PleI | GAGTC | 4 cut(s) | 59, 211, 612, 787 |
| PluTI | GGCGCC | 1 cut(s) | 591 |
| PpsI | GAGTC | 4 cut(s) | 59, 211, 612, 787 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| Psp6I | CCWGG | 1 cut(s) | 748 |
| PspGI | CCWGG | 1 cut(s) | 748 |
| PspN4I | GGNNCC | 4 cut(s) | 530, 589, 664, 745 |
| PspPI | GGNCC | 1 cut(s) | 372 |
| PsyI | GACNNNGTC | 1 cut(s) | 56 |
| RseI | CAYNNNNRTG | 5 cut(s) | 350, 582, 612, 735, 738 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| SatI | GCNGC | 1 cut(s) | 759 |
| Sau3AI | GATC | 2 cut(s) | 189, 475 |
| Sau96I | GGNCC | 1 cut(s) | 372 |
| SchI | GAGTC | 4 cut(s) | 59, 211, 613, 787 |
| ScrFI | CCNGG | 1 cut(s) | 750 |
| SduI | GDGCHC | 2 cut(s) | 309, 748 |
| SfaNI | GCATC | 2 cut(s) | 262, 745 |
| SfoI | GGCGCC | 1 cut(s) | 589 |
| SinI | GGWCC | 1 cut(s) | 372 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 350, 582, 612, 735, 738 |
| Sse9I | AATT | 4 cut(s) | 173, 364, 403, 811 |
| SseBI | AGGCCT | 1 cut(s) | 802 |
| SsiI | CCGC | 2 cut(s) | 106, 666 |
| SspDI | GGCGCC | 1 cut(s) | 587 |
| SspMI | CTAG | 3 cut(s) | 83, 131, 687 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| StuI | AGGCCT | 1 cut(s) | 802 |
| StyD4I | CCNGG | 1 cut(s) | 748 |
| StyI | CCWWGG | 2 cut(s) | 686, 717 |
| TaaI | ACNGT | 1 cut(s) | 700 |
| TaiI | ACGT | 3 cut(s) | 60, 472, 547 |
| TaqI | TCGA | 4 cut(s) | 39, 265, 270, 368 |
| TasI | AATT | 4 cut(s) | 173, 364, 403, 811 |
| TfiI | GAWTC | 3 cut(s) | 267, 288, 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| TseI | GCWGC | 1 cut(s) | 758 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 290, 335 |
| TspGWI | ACGGA | 4 cut(s) | 115, 364, 541, 661 |
| Tth111I | GACNNNGTC | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 1 cut(s) | 372 |
| XapI | RAATTY | 1 cut(s) | 811 |
| XbaI | TCTAGA | 1 cut(s) | 130 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 25, 426, 689, 737 |
| XmaJI | CCTAGG | 1 cut(s) | 686 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 3 cut(s) | 83, 131, 687 |